G181779


Basic Information

Item Value
gene id G181779
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15121455 ~ 15121666 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU215154
TGAGGCTTGTGCTTTatcttctcactctctgtctgggTGTGGGTCACGTTTACCAGGGCCTCCTCACACAGATTTATCCAGCTTCCTAGGGCCTTCTCCAGCTTCGACCATTCAGAGTGATGCAGCATTTCAGGCCTTCCAATAAGAGACTTCAGTCTGTTAGCCCAGGAGTCAATTACTCCAGCCAGAGTGATCAACTGTTGATGAATTCC

Function

NR:

description
PREDICTED: UPF0609 protein C4orf27 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215154 True 212 lncRNA 0.49 1 15121455 15121666

Neighbor

gene id symbol gene type direction distance location
nfia nfia,LOC107592693,LOC107599440,LOC107653654 coding downstream 98807 14867923 ~ 15022648 (-)
patj patj,inadl,LOC107715056 coding downstream 282998 14711596 ~ 14838457 (-)
stx6 stx6,LOC107715114,LOC107731540,LOC107669815,LOC107653648 coding downstream 454502 14653703 ~ 14666953 (-)
plekhb2 plekhb2,LOC106613863 coding downstream 501770 14614640 ~ 14619685 (-)
cts12 LOC108270686,LOC103033790 coding downstream 533724 14581544 ~ 14587731 (-)
nphs2 nphs2 coding upstream 5592 15127258 ~ 15132792 (-)
LOC113535381 NA coding upstream 166419 15288085 ~ 15298641 (-)
hnrnpm hnrnpm,LOC105900966,LOC107728570 coding upstream 179382 15301048 ~ 15308956 (-)
march2 march2,LOC107655247,LOC107592682 coding upstream 190605 15312271 ~ 15320383 (-)
rab11ba rab11b,LOC108429533,LOC107592688,LOC107599444,LOC107655249,LOC108280567 coding upstream 200538 15322204 ~ 15329503 (-)
LOC117598447 NA non-coding downstream 57418 15060131 ~ 15064037 (-)
G181721 NA non-coding downstream 138896 14977671 ~ 14982559 (-)
G181713 NA non-coding downstream 177239 14939037 ~ 14944216 (-)
G181703 NA non-coding downstream 214223 14904851 ~ 14907232 (-)
G181638 LOC100304758 non-coding downstream 448726 14670909 ~ 14672729 (-)
G181781 NA non-coding upstream 4995 15126661 ~ 15127182 (-)
G181810 NA non-coding upstream 45492 15167158 ~ 15167671 (-)
G182209 NA non-coding upstream 566533 15688199 ~ 15688418 (-)
G182212 NA non-coding upstream 572303 15693969 ~ 15694702 (-)
LOC113546824 NA non-coding upstream 708858 15830524 ~ 15833544 (-)
lama3 LOC108270685 other downstream 541708 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 613845 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 627596 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 661118 14437360 ~ 14460337 (-)
rx1 LOC108270609 other downstream 706386 14408726 ~ 14415069 (-)
G182210 NA other upstream 569108 15690774 ~ 15692350 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 1153216 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 2124106 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 2221149 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 4194453 19316119 ~ 19316374 (-)

Expression


Co-expression Network