hnrnpm (hnrnpm,LOC105900966,LOC107728570)


Basic Information

Item Value
gene id hnrnpm
gene name hnrnpm,LOC105900966,LOC107728570
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15301048 ~ 15308956 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928620.2
ATCCATTTCGTCGCTCTGCCGCCATTTCACTCGTCCAGGAGCGCCGGGAGTAGAGTAGCTCAGTGTAACCGCGTTGCTTGACAAATATATCAGTAAATTTAGCTATTAAACACCGCTTTCCTGTTGTTACTTGTATTTGACGTTAATTTGCATGTCAGGAAAAGAAGAAACGCCGACAATGTCGTCTGATGCTGCACCAGAGAAACCAGGCCAAGGAAATGCAGTGAATGGAAAGCCCAGCCATGAGTCCAGGAAGGAGAGATCGTCCAAACGAGGAGGTGGTAGATACGAGCCCTACGCCAACCCCTCCAAGAGATACCGGGTTTTTGTGAGCAACATTCCCTATGATGTCAAATGGCAGGCGCTGAAGGACctaatgaaagaaaaagTGGGTGAGGTAACGTACGTGGAACACTTAATGGACGCGGAAGGCAAATCAAGGGGTTGTGCGGTGGTTGAGTTTAGAACCGAAGAACTAATGAAGAAGGCTGTGGATAAAGTCAATAAATACAACATGAATGGACGTCCTTTGAAAGTGAAAGAGGATCCAGATGGAGTGATTGCCCAGCGTGAAGCCCACAGGgttcagggtggtggtggagggCCTCCTGGTGGTATGGGTGGAGGAATGGGTGGTGGAATGGGTATGGGACCCGGACCTGGTGCTCCCCCCATGGTCAACATCCCGCCAAGTCTCATGAACAATCCAAACATTCCTAATGAGATCATCCATGGCCTTCAAGCTGGCAAGATAGGAAGCACAGTTTTTGTGGCAAATcttGATTATAAGGTGGGCTGGAAGAAGCTGAAAGAGGTGTTCAGCATGGCTGGGGTGGTCGTCCGCACTGACATCCTAGAGGACAAAGATGGCAAGAGCAGGGGCATGGGAACAGTCACCTTTGAAATGCCAATTGAAGCTGTGCAAGCAGTCTCCATGTTCAATGGCCAGCTCCTGTTCAATCGAACCATGCATGTTAAGCTGGATGAGAAATCTATGCCTAAGGGTGACTTTGCACCCCCTGAGAGACCACCTGCACTGCCTCGTGGTCTGAGTGGTATTGGTCTGGGATTGGGGCCCGGTGGACAACCCATTGATGCTGCACAGCTGAACCGTGGTGGAGGGATGAGCAACATGGGGCCTGGAGGAATGGATGGGATAGGATTTGGTGGCATGGGTAGAATGGGAGGAATGGATAATTTTGGAGGTGGAATAAACAACATGGATCGTTTTGGCCCTTCTGGAATGGGGAGGATGAATGACATGGATCGTGGAATTGGGGCTGCCTTTGACAGAGAATTTGGTGGCCGTAATGAGATGGGCATGTCCCGCAATAACTTCGGAGACTCTTTTGACAGAGGAATGGGTAACTCCATGGCAATGGATCGCATGAGTGCTGGTATGGACCGACTTGGTGCCAACATGGATCGCATGGGCAGCCTGGACAGAATGGGGATGGATCGCATGGACCGTGTGTCTGACCTGGACAGGATGGGTTCTGGCTTTGATCGTATGGGCTCAGGCATGGATCGACTGGGGCCCAGCATGGACAGGCTGGGATCTGGCCTGGACCGTATGAGCTCTGGCATGGACCGCCTGGGTCCGTCCAGTTTTGATCGCCTAGGCCCATCCAGCCTGGAGCGCATGAGTGCAGGCATGGATTTTGCCTCACCAATGGGCATGGACAGAATGAATGCTGGTCTCGACCGCATGGGGTCCAACTTTGAGCGCATGGGCTCGGGTGGGTTGGACCGTTTCCCAGCCCCAGGAATGGACCGTGTGGGTTCCAGCATTGACCGAATGGACCGCATGGACCGCATGGGCTCTGGTGTGGGAGGACAGTTTGATCGAGGTGCAGATATGGACCGCGGTAACTTTGGCAGCTTCAGCTCAGCGGGGCAAGGAGGTCCAGGAGCTGGAGCCAATGCCAGAAAGGGCTGCCAGATCTTTGTCAGAAATCTGCCATTTGATTTTACCTGGAAGATGCTGAAGGATGCCTTCAATTCATGTGGTATGGTGCAGTATGCTGATATCAAGATGGAGAATGGCAAGTCCAAGGGTTGTGGTGTGGTTCGCTTCGACAGTCCTGAAACAGCAGAGCGCGCTTGCCGCACTATGAATGGTTATCGACTGAATGGCAGAGAGATTGACGTGAGGATCGACAGAAACGCATAATCCCCCTGTCTACTTTCTCCATTTCGATACAGAGCTttccatgtttttgtttattacatttctaCTAGTGCAAAATTGGTGCAGTTTTAGTTTCTGCTTGCTTAAGTTTTTAGAGAccaattttcatttttcttaccCTCCCCTCTTTTTAATCCTTATGCTAGAAATGACCTTTGGTAAAGGTTTGACAATAAATCTCGAATGTTAA
>XM_026928626.2
ATCCATTTCGTCGCTCTGCCGCCATTTCACTCGTCCAGGAGCGCCGGGAGTAGAGTAGCTCAGTGTAACCGCGTTGCTTGACAAATATATCAGTAAATTTAGCTATTAAACACCGCTTTCCTGTTGTTACTTGTATTTGACGTTAATTTGCATGTCAGGAAAAGAAGAAACGCCGACAATGTCGTCTGATGCTGCACCAGAGAAACCAGGCCAAGGAAATGCAGTGAATGGAAAGCCCAGCCATGAGTCCAGGAAGGAGAGATCGTCCAAACGAGGAGGTGGTAGATACGAGCCCTACGCCAACCCCTCCAAGAGATACCGGGTTTTTGTGAGCAACATTCCCTATGATGTCAAATGGCAGGCGCTGAAGGACctaatgaaagaaaaagTGGGTGAGGTAACGTACGTGGAACACTTAATGGACGCGGAAGGCAAATCAAGGGGTTGTGCGGTGGTTGAGTTTAGAACCGAAGAACTAATGAAGAAGGCTGTGGATAAAGTCAATAAATACAACATGAATGGACGTCCTTTGAAAGTGAAAGAGGATCCAGATGGAGTGATTGCCCAGCGTGAAGCCCACAGGgttcagggtggtggtggagggCCTCCTGGTGGTATGGGTGGAGGAATGGGTGGTGGAATGGGTATGGGACCCGGACCTGGTGCTCCCCCCATGGTCAACATCCCGCCAAGTCTCATGAACAATCCAAACATTCCTAATGAGATCATCCATGGCCTTCAAGCTGGCAAGATAGGAAGCACAGTTTTTGTGGCAAATcttGATTATAAGGTGGGCTGGAAGAAGCTGAAAGAGGTGTTCAGCATGGCTGGGGTGGTCGTCCGCACTGACATCCTAGAGGACAAAGATGGCAAGAGCAGGGGCATGGGAACAGTCACCTTTGAAATGCCAATTGAAGCTGTGCAAGCAGTCTCCATGTTCAATGGCCAGCTCCTGTTCAATCGAACCATGCATGTTAAGCTGGATGAGAAATCTATGCCTAAGGGTGACTTTGCACCCCCTGAGAGACCACCTGCACTGCCTCGTGGTCTGAGTGGTATTGGTCTGGGATTGGGGCCCGGTGGACAACCCATTGATGCTGCACAGCTGAACCGTGGTGGAGGGATGAGCAACATGGGGCCTGGAGGAATGGATAATTTTGGAGGTGGAATAAACAACATGGATCGTTTTGGCCCTTCTGGAATGGGGAGGATGAATGACATGGATCGTGGAATTGGGGCTGCCTTTGACAGAGAATTTGGTGGCCGTAATGAGATGGGCATGTCCCGCAATAACTTCGGAGACTCTTTTGACAGAGGAATGGGTAACTCCATGGCAATGGATCGCATGAGTGCTGGTATGGACCGACTTGGTGCCAACATGGATCGCATGGGCAGCCTGGACAGAATGGGGATGGATCGCATGGACCGTGTGTCTGACCTGGACAGGATGGGTTCTGGCTTTGATCGTATGGGCTCAGGCATGGATCGACTGGGGCCCAGCATGGACAGGCTGGGATCTGGCCTGGACCGTATGAGCTCTGGCATGGACCGCCTGGGTCCGTCCAGTTTTGATCGCCTAGGCCCATCCAGCCTGGAGCGCATGAGTGCAGGCATGGATTTTGCCTCACCAATGGGCATGGACAGAATGAATGCTGGTCTCGACCGCATGGGGTCCAACTTTGAGCGCATGGGCTCGGGTGGGTTGGACCGTTTCCCAGCCCCAGGAATGGACCGTGTGGGTTCCAGCATTGACCGAATGGACCGCATGGACCGCATGGGCTCTGGTGTGGGAGGACAGTTTGATCGAGGTGCAGATATGGACCGCGGTAACTTTGGCAGCTTCAGCTCAGCGGGGCAAGGAGGTCCAGGAGCTGGAGCCAATGCCAGAAAGGGCTGCCAGATCTTTGTCAGAAATCTGCCATTTGATTTTACCTGGAAGATGCTGAAGGATGCCTTCAATTCATGTGGTATGGTGCAGTATGCTGATATCAAGATGGAGAATGGCAAGTCCAAGGGTTGTGGTGTGGTTCGCTTCGACAGTCCTGAAACAGCAGAGCGCGCTTGCCGCACTATGAATGGTTATCGACTGAATGGCAGAGAGATTGACGTGAGGATCGACAGAAACGCATAATCCCCCTGTCTACTTTCTCCATTTCGATACAGAGCTttccatgtttttgtttattacatttctaCTAGTGCAAAATTGGTGCAGTTTTAGTTTCTGCTTGCTTAAGTTTTTAGAGAccaattttcatttttcttaccCTCCCCTCTTTTTAATCCTTATGCTAGAAATGACCTTTGGTAAAGGTTTGACAATAAATCTCGAATGTTAA
>XM_026928627.2
TATCCATTTCGTCGCTCTGCCGCCATTTCACTCGTCCAGGAGCGCCGGGAGTAGAGTAGCTCAGTGTAACCGCGTTGCTTGACAAATATATCAGTAAATTTAGCTATTAAACACCGCTTTCCTGTTGTTACTTGTATTTGACGTTAATTTGCATGTCAGGAAAAGAAGAAACGCCGACAATGTCGTCTGATGCTGCACCAGAGAAACCAGGCCAAGGAAATGCAGTGAATGGAAAGCCCAGCCATGAGTCCAGGAAGGAGAGATCGTCCAAACGAGGAGGTGGTAGATACGAGCCCTACGCCAACCCCTCCAAGAGATACCGGGTTTTTGTGAGCAACATTCCCTATGATGTCAAATGGCAGGCGCTGAAGGACctaatgaaagaaaaagGGTTGTGCGGTGGTTGAGTTTAGAACCGAAGAACTAATGAAGAAGGCTGTGGATAAAGTCAATAAATACAACATGAATGGACGTCCTTTGAAAGTGAAAGAGGATCCAGATGGAGTGATTGCCCAGCGTGAAGCCCACAGGgttcagggtggtggtggagggCCTCCTGGTGGTATGGGTGGAGGAATGGGTGGTGGAATGGGTATGGGACCCGGACCTGGTGCTCCCCCCATGGTCAACATCCCGCCAAGTCTCATGAACAATCCAAACATTCCTAATGAGATCATCCATGGCCTTCAAGCTGGCAAGATAGGAAGCACAGTTTTTGTGGCAAATcttGATTATAAGGTGGGCTGGAAGAAGCTGAAAGAGGTGTTCAGCATGGCTGGGGTGGTCGTCCGCACTGACATCCTAGAGGACAAAGATGGCAAGAGCAGGGGCATGGGAACAGTCACCTTTGAAATGCCAATTGAAGCTGTGCAAGCAGTCTCCATGTTCAATGGCCAGCTCCTGTTCAATCGAACCATGCATGTTAAGCTGGATGAGAAATCTATGCCTAAGGGTGACTTTGCACCCCCTGAGAGACCACCTGCACTGCCTCGTGGTCTGAGTGGTATTGGTCTGGGATTGGGGCCCGGTGGACAACCCATTGATGCTGCACAGCTGAACCGTGGTGGAGGGATGAGCAACATGGGGCCTGGAGGAATGGATGGGATAGGATTTGGTGGCATGGGTAGAATGGGAGGAATGGATAATTTTGGAGGTGGAATAAACAACATGGATCGTTTTGGCCCTTCTGGAATGGGGAGGATGAATGACATGGATCGTGGAATTGGGGCTGCCTTTGACAGAGAATTTGGTGGCCGTAATGAGATGGGCATGTCCCGCAATAACTTCGGAGACTCTTTTGACAGAGGAATGGGTAACTCCATGGCAATGGATCGCATGAGTGCTGGTATGGACCGACTTGGTGCCAACATGGATCGCATGGGCAGCCTGGACAGAATGGGGATGGATCGCATGGACCGTGTGTCTGACCTGGACAGGATGGGTTCTGGCTTTGATCGTATGGGCTCAGGCATGGATCGACTGGGGCCCAGCATGGACAGGCTGGGATCTGGCCTGGACCGTATGAGCTCTGGCATGGACCGCCTGGGTCCGTCCAGTTTTGATCGCCTAGGCCCATCCAGCCTGGAGCGCATGAGTGCAGGCATGGATTTTGCCTCACCAATGGGCATGGACAGAATGAATGCTGGTCTCGACCGCATGGGGTCCAACTTTGAGCGCATGGGCTCGGGTGGGTTGGACCGTTTCCCAGCCCCAGGAATGGACCGTGTGGGTTCCAGCATTGACCGAATGGACCGCATGGACCGCATGGGCTCTGGTGTGGGAGGACAGTTTGATCGAGGTGCAGATATGGACCGCGGTAACTTTGGCAGCTTCAGCTCAGCGGGGCAAGGAGGTCCAGGAGCTGGAGCCAATGCCAGAAAGGGCTGCCAGATCTTTGTCAGAAATCTGCCATTTGATTTTACCTGGAAGATGCTGAAGGATGCCTTCAATTCATGTGGTATGGTGCAGTATGCTGATATCAAGATGGAGAATGGCAAGTCCAAGGGTTGTGGTGTGGTTCGCTTCGACAGTCCTGAAACAGCAGAGCGCGCTTGCCGCACTATGAATGGTTATCGACTGAATGGCAGAGAGATTGACGTGAGGATCGACAGAAACGCATAATCCCCCTGTCTACTTTCTCCATTTCGATACAGAGCTttccatgtttttgtttattacatttctaCTAGTGCAAAATTGGTGCAGTTTTAGTTTCTGCTTGCTTAAGTTTTTAGAGAccaattttcatttttcttaccCTCCCCTCTTTTTAATCCTTATGCTAGAAATGACCTTTGGTAAAGGTTTGACAATAAATCTCGAATGTTAA

Function

symbol description
hnrnpm Predicted to enable mRNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome and regulation of mRNA stability involved in response to oxidative stress. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be part of post-mRNA release spliceosomal complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human HNRNPM (heterogeneous nuclear ribonucleoprotein M).

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein M isoform X2

GO: NA

KEGG:

id description
K12887 HNRNPM; heterogeneous nuclear ribonucleoprotein M

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928620.2 True 2381 mRNA 0.51 16 15301048 15308955
XM_026928626.2 False 2339 mRNA 0.51 15 15301048 15308955
XM_026928627.2 False 2329 mRNA 0.51 15 15301048 15308956

Neighbor

gene id symbol gene type direction distance location
LOC113535381 NA coding downstream 2407 15288085 ~ 15298641 (-)
nphs2 nphs2 coding downstream 168256 15127258 ~ 15132792 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 coding downstream 278400 14867923 ~ 15022648 (-)
patj patj,inadl,LOC107715056 coding downstream 462591 14711596 ~ 14838457 (-)
stx6 stx6,LOC107715114,LOC107731540,LOC107669815,LOC107653648 coding downstream 634095 14653703 ~ 14666953 (-)
march2 march2,LOC107655247,LOC107592682 coding upstream 3315 15312271 ~ 15320383 (-)
rab11ba rab11b,LOC108429533,LOC107592688,LOC107599444,LOC107655249,LOC108280567 coding upstream 13248 15322204 ~ 15329503 (-)
pip5k1ca pip5k1c,LOC108429534 coding upstream 23308 15332264 ~ 15365572 (-)
arhgap45b LOC108271042,LOC108429536,LOC107655244,LOC107669820 coding upstream 84153 15393109 ~ 15412632 (-)
tjp3 LOC108271152 coding upstream 108258 15417214 ~ 15438724 (-)
G181810 NA non-coding downstream 133377 15167158 ~ 15167671 (-)
G181781 NA non-coding downstream 173866 15126661 ~ 15127182 (-)
G181779 NA non-coding downstream 179382 15121455 ~ 15121666 (-)
LOC117598447 NA non-coding downstream 237011 15060131 ~ 15064037 (-)
G181721 NA non-coding downstream 318489 14977671 ~ 14982559 (-)
G182209 NA non-coding upstream 379243 15688199 ~ 15688418 (-)
G182212 NA non-coding upstream 385013 15693969 ~ 15694702 (-)
LOC113546824 NA non-coding upstream 521568 15830524 ~ 15833544 (-)
G182298 NA non-coding upstream 583890 15892846 ~ 15893060 (-)
G182303 NA non-coding upstream 595322 15904278 ~ 15978716 (-)
lama3 LOC108270685 other downstream 721301 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 793438 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 807189 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 840711 14437360 ~ 14460337 (-)
rx1 LOC108270609 other downstream 885979 14408726 ~ 14415069 (-)
G182210 NA other upstream 381818 15690774 ~ 15692350 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 965926 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 1936816 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 2033859 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 4007163 19316119 ~ 19316374 (-)

Expression


Co-expression Network