plekhb2 (plekhb2,LOC106613863)


Basic Information

Item Value
gene id plekhb2
gene name plekhb2,LOC106613863
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14614640 ~ 14619685 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930367.2
GTAATCGCGTTACAGGCGGAAGTGAATTCCTGAAACCTCGCGCGCCCCCAGAATCAGCTGATGGGACGGATGATGGCGATGACGTCACTCGCGTAAACGGCAGGAGTCCATTACTAGCTCGACACTTTGACACCTAACGATCATCCGTTTCTTCAGGAATGGCGTTTGTTAAAAGCGGATGGCTTCACCGCCAGAGTACCATCTTGCGTCGCTGGAAGAAAAACTGGTTTGACCTTTGGTCAGATGGCCGTCTAATTTTCTATGATGACCAGCAACGGCGTGACATGGAGGATGAGATCCACATGAGGGTGGACTGTATTAATATTCGCAATGCCAATGCATGTCGAGATCTAACACCTCCGGAAGGAAAAGGCAGAGAAGCCCTTCTTCAGATTGTGTGCCGTGATGGACGTGTTATCAGCCTCTGTGCAGACAGTGCAGATGATGCCCTGGCCTGGACTGTGGCCCTTCAGGATGCCAGAATCAACACAGTGGTGGCACCCCCTCAGTTTGGTTTTACCCAGGAAGTTATTGCATCCGCTCCTCCTTCTTATGCGGAATTAAACCCCACTCCTCAGGTATACTACCCAGACCAATATGGCGGCTATGTCCCTTATCCTCCTCCTCCCTATGCCCCTAATGCTGTGTACTCTGCAGGTGGGCACCAGTATGCATTTGCCTCCCCCTATCACCACCAAGGAGCGTACCCTGCACATGAAGTCAACCATGTGATCATTGAGGAGCGTCGGCGTGATGATGCAGGGGGTATCGCTCTCGGCATGCTCACCGGTGCTGCAACAGGATTGGCTATCGGTTCcctattttctgtattttaatatGCATCATTCTGTCCCTCTGAGTCCCAACGTGAGATGGACTAGTCTTGTGCTACTGCTCTTATCTTTGCTGCAACCCCATGATGTATGTAATACTTAGATCTAATAGATGTTAACTGCCTAACAGATCACAAGCGCTTCCACACAGCTAATTAGTCTATATGAACCAAAGCCTCATGGTAGCATTTATAGCTTGGTCTGAGAGAGTTTGTTTCACATGTActttgtgaaatgaaatgaagtggtTGAACTGAGACAGTATTGAACGGATGTCAGGGTGGTTGCACATGAAAATTGGGTCACCTGCTTAGATCGCATTTGTAGGCTAAATGTGGTAAAATGAAGTATGACCGGTGATTCCTTTTCATTATGGTATCTTAAAATGATTGGCAttgtattaatttttctttcGCTGAGTCCATGGGATGTTTTCTAAGCAGACCTTAGTAGCTGATCAAACAGGACAAACATGAGGTAACATTTGCTTGAAACTTAAGACTAACAGTAGGTTTGCTGTGCATAAACATTTGATGATTCCTGAACTTAACAAGTTGTCAGTTGGTGGAAATCTGTAATACGAATAGTGcaataattaatgcattttggAAAGATTCTGATCTTGATTTCATCACAGGTCAATGATGGCCTTATTTGGGACATGCACATACTTCCATTGTGGCCTTACATGGAGACCTAAAAATCCAAGAAGCAGACCAGATgctataaataatcaaatatgtTGAGATTGAGATTGGACATGACCCAGTATATTGTGTTGAACTAGGTTGCTGGAAAAATGCAAATCTATATGTTGAGTCATCTGTTACTGCAAACATTAACTCATTAACTCACTGTTTATCACTTAAGCATTTGCCTTACTCCAAATCAAGTGATTACATAGCTGCATTTAAGATGcatattattttcctttctgcGCCAAAAGATCGAACTTATGAACACTGCCACCACAGTCAGAAAATACAGCCACCGACGACCCACACCAGAGCTCAGATTTAGGTATGAATATCTGCTCTGTTTGAGCTAATTCCATAGCAACAATGATGTGTAATGTATATTAGAATATCAGAGAAGCACTCCAGGTTTGCATTGGTGTGAGAGCTTGTTCTCCTTCTGGCTCTGGCTTTACTCCTACCGTGTGTCCATCACTGAACCCTCATTTACTCTACACTTCTAAAGTGTTCATTCTGAAGAACTTGAAAAGCCGCTATAATAATAGTAGAATTTATGATACTTGTTCCtcttttggaaaataattttttaaaaagcttctCTCcagtttgtgttatttatttggttTGGGTTTGTGGAAAATGTCTTAATGCTTTGTTATGGTATTTCTGTTTCTACTTTatatgcttttttgttgttttctgaagAAGTAAAATGAAGCAGCACATTTTAACCCATTAACacaaaatgagtgaatgaatgctCTCTGAGTAACATCCAAGGGAATCTGACCTCCCACAGTAATGTAAGGAGAAACACATGATGTACACAGGGCATTGGATTTTCACCTTTTCTTCTGGTCAGTTTTTCATTAGATATACTGTAACATTAATTATGGTCTATGTTAGACCATATTAGTTACTAAATACATTTACTCCCTGTTTACTTGAGCATTGCACATTGTGTTTACATGAGCAACAGTGTGTTAAATTGGGTTTAAACTGAGGTAATTagtatgtttaataaaattccCTTCAACAATTTATCACATTTTGAGTGTTACAGATATTGGTATTTGTGAACCAATAACCAAAATATGTAAATCTACTAAATACCTTCTGAAGATACTCTGTTTTAAGTTGTATTTAACTTGTACTCTCTTACTCTTGGTCCAGTTTACTTGCACATACACTATTTGTTGCTGAACCAGTTTGCATTTCCATGTTATACTATtgtgaaattaattaaagtaaGTGACTAAACTGAA
>XM_026930377.2
GTAATCGCGTTACAGGCGGAAGTGAATTCCTGAAACCTCGCGCGCCCCCAGAATCAGCTGATGGGACGGATGATGGCGATGACGTCACTCGCGTAAACGGCAGGAGTCCATTACTAGCTCGACACTTTGACACCTAACGATCATCCGTTTCTTCAGGAATGGCGTTTGTTAAAAGCGGATGGCTTCACCGCCAGAGTACCATCTTGCGTCGCTGGAAGAAAAACTGGTTTGACCTTTGGTCAGATGGCCGTCTAATTTTCTATGATGACCAGCAACGGCGTGACATGGAGGATGAGATCCACATGAGGGTGGACTGTATTAATATTCGCAATGCCAATGCATGTCGAGATCTAACACCTCCGGAAGGAAAAGGCAGAGAAGCCCTTCTTCAGATTGTGTGCCGTGATGGACGTGTTATCAGCCTCTGTGCAGACAGTGCAGATGATGCCCTGGCCTGGACTGTGGCCCTTCAGGATGCCAGAATCAACACAGTGGTGGCACCCCCTCAGTTTGGTTTTACCCAGGAAGTTATTGCATCCGCTCCTCCTTCTTATGCGGAATTAAACCCCACTCCTCAGGTATACTACCCAGACCAATATGGCGGCTATGTCCCTTATCCTCCTCCTCCCTATGCCCCTAATGCTGTGTACTCTGCAGGAGCGTACCCTGCACATGAAGTCAACCATGTGATCATTGAGGAGCGTCGGCGTGATGATGCAGGGGGTATCGCTCTCGGCATGCTCACCGGTGCTGCAACAGGATTGGCTATCGGTTCcctattttctgtattttaatatGCATCATTCTGTCCCTCTGAGTCCCAACGTGAGATGGACTAGTCTTGTGCTACTGCTCTTATCTTTGCTGCAACCCCATGATGTATGTAATACTTAGATCTAATAGATGTTAACTGCCTAACAGATCACAAGCGCTTCCACACAGCTAATTAGTCTATATGAACCAAAGCCTCATGGTAGCATTTATAGCTTGGTCTGAGAGAGTTTGTTTCACATGTActttgtgaaatgaaatgaagtggtTGAACTGAGACAGTATTGAACGGATGTCAGGGTGGTTGCACATGAAAATTGGGTCACCTGCTTAGATCGCATTTGTAGGCTAAATGTGGTAAAATGAAGTATGACCGGTGATTCCTTTTCATTATGGTATCTTAAAATGATTGGCAttgtattaatttttctttcGCTGAGTCCATGGGATGTTTTCTAAGCAGACCTTAGTAGCTGATCAAACAGGACAAACATGAGGTAACATTTGCTTGAAACTTAAGACTAACAGTAGGTTTGCTGTGCATAAACATTTGATGATTCCTGAACTTAACAAGTTGTCAGTTGGTGGAAATCTGTAATACGAATAGTGcaataattaatgcattttggAAAGATTCTGATCTTGATTTCATCACAGGTCAATGATGGCCTTATTTGGGACATGCACATACTTCCATTGTGGCCTTACATGGAGACCTAAAAATCCAAGAAGCAGACCAGATgctataaataatcaaatatgtTGAGATTGAGATTGGACATGACCCAGTATATTGTGTTGAACTAGGTTGCTGGAAAAATGCAAATCTATATGTTGAGTCATCTGTTACTGCAAACATTAACTCATTAACTCACTGTTTATCACTTAAGCATTTGCCTTACTCCAAATCAAGTGATTACATAGCTGCATTTAAGATGcatattattttcctttctgcGCCAAAAGATCGAACTTATGAACACTGCCACCACAGTCAGAAAATACAGCCACCGACGACCCACACCAGAGCTCAGATTTAGGTATGAATATCTGCTCTGTTTGAGCTAATTCCATAGCAACAATGATGTGTAATGTATATTAGAATATCAGAGAAGCACTCCAGGTTTGCATTGGTGTGAGAGCTTGTTCTCCTTCTGGCTCTGGCTTTACTCCTACCGTGTGTCCATCACTGAACCCTCATTTACTCTACACTTCTAAAGTGTTCATTCTGAAGAACTTGAAAAGCCGCTATAATAATAGTAGAATTTATGATACTTGTTCCtcttttggaaaataattttttaaaaagcttctCTCcagtttgtgttatttatttggttTGGGTTTGTGGAAAATGTCTTAATGCTTTGTTATGGTATTTCTGTTTCTACTTTatatgcttttttgttgttttctgaagAAGTAAAATGAAGCAGCACATTTTAACCCATTAACacaaaatgagtgaatgaatgctCTCTGAGTAACATCCAAGGGAATCTGACCTCCCACAGTAATGTAAGGAGAAACACATGATGTACACAGGGCATTGGATTTTCACCTTTTCTTCTGGTCAGTTTTTCATTAGATATACTGTAACATTAATTATGGTCTATGTTAGACCATATTAGTTACTAAATACATTTACTCCCTGTTTACTTGAGCATTGCACATTGTGTTTACATGAGCAACAGTGTGTTAAATTGGGTTTAAACTGAGGTAATTagtatgtttaataaaattccCTTCAACAATTTATCACATTTTGAGTGTTACAGATATTGGTATTTGTGAACCAATAACCAAAATATGTAAATCTACTAAATACCTTCTGAAGATACTCTGTTTTAAGTTGTATTTAACTTGTACTCTCTTACTCTTGGTCCAGTTTACTTGCACATACACTATTTGTTGCTGAACCAGTTTGCATTTCCATGTTATACTATtgtgaaattaattaaagtaaGTGACTAAACTGAA

Function

symbol description
plekhb2 Predicted to be involved in regulation of cell differentiation. Predicted to be integral component of membrane. Orthologous to human PLEKHB2 (pleckstrin homology domain containing B2).

NR:

description
pleckstrin homology domain-containing family B member 2-like

GO: NA

KEGG:

id description
K23857 PLEKHB; pleckstrin homology domain-containing family B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930367.2 True 2793 mRNA 0.41 8 14614640 14619685
XM_026930377.2 False 2751 mRNA 0.40 8 14614640 14619685

Neighbor

gene id symbol gene type direction distance location
cts12 LOC108270686,LOC103033790 coding downstream 26909 14581544 ~ 14587731 (-)
ttc39c ttc39c,LOC108270684,LOC108429509,LOC107653643,LOC107669847 coding downstream 66032 14527131 ~ 14548608 (-)
LOC113534236 NA coding downstream 92980 14517370 ~ 14521660 (-)
matk matk coding downstream 179666 14420490 ~ 14434974 (-)
cherp cherp coding downstream 209145 14390531 ~ 14405495 (-)
stx6 stx6,LOC107715114,LOC107731540,LOC107669815,LOC107653648 coding upstream 34018 14653703 ~ 14666953 (-)
patj patj,inadl,LOC107715056 coding upstream 91911 14711596 ~ 14838457 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 coding upstream 248238 14867923 ~ 15022648 (-)
nphs2 nphs2 coding upstream 507573 15127258 ~ 15132792 (-)
LOC113535381 NA coding upstream 668400 15288085 ~ 15298641 (-)
G181401 NA non-coding downstream 131456 14481529 ~ 14483184 (-)
G181298 NA non-coding downstream 179026 14435301 ~ 14435614 (-)
G181207 NA non-coding downstream 410909 14156503 ~ 14203731 (-)
G181205 NA non-coding downstream 477685 14136454 ~ 14136955 (-)
G181197 NA non-coding downstream 489717 14080499 ~ 14124923 (-)
G181453 NA non-coding upstream 6750 14626435 ~ 14627355 (-)
G181462 NA non-coding upstream 16547 14636232 ~ 14636441 (-)
G181463 LOC108270690 non-coding upstream 18037 14637722 ~ 14638851 (-)
G181465 NA non-coding upstream 20911 14640596 ~ 14640859 (-)
G181467 NA non-coding upstream 22207 14641892 ~ 14642476 (-)
lama3 LOC108270685 other downstream 34893 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 107030 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 120781 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 154303 14437360 ~ 14460337 (-)
rx1 LOC108270609 other downstream 199571 14408726 ~ 14415069 (-)
G182210 NA other upstream 1071089 15690774 ~ 15692350 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 1655197 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 2626087 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 2723130 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 4696434 19316119 ~ 19316374 (-)

Expression


Co-expression Network