cts12 (LOC108270686,LOC103033790)


Basic Information

Item Value
gene id cts12
gene name LOC108270686,LOC103033790
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14581544 ~ 14587731 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927907.2
AGTGACCTCTGCATGGGTTATATCCTCTAGTTCTCATCAGAAACTCATCCACTGGACAGtactcacaaaaacatgccagATATGGGTCGAGTCCCTTGGATGGTTCTGGTTAGCAGGACACTCCTGGTCAGCGTCTTCGTGGCTGTACCGCTCTCAATGGCTGTGGAGTCAGAAGAGGACGCACCATCAGAGTGGAAGCTGTGGAAGAGAGCTAATGGAGTGGACTATGAAGAAGAGAACAATGATATTAAAAGAAGAGCCATTTGGGAGAAAAACAAGGAGCTGATTGAGGATAACAATAGAAAATTTTATATGGGCGTGTCAGAGTTTACTATGGCAATGAACAAATACGGAGACCTGACTCGGTTGGAGTATCATCAGTTACTGGGAGCCAAGGTAAATGGAAATGCACATAAGAAGGGAAAGACTGCTAATGCACGCAAGCTACGCTACCATGCTCGGAGACTACGGCTGACCTCGGTAGACTACAGACAGATGGGATACGTTACAGAGGTTAAAGACCAGGGCTACTGTGGGTCGTGTTGGGCTTTCAGCACTACTGGTGCCATTGAGGGACAAATGTTCAGGAAAACAGGCCAGCTGGTGTCTCTTAGTGAGCAGAATCTGGTGGACTGCTCATGGTCCTACGGCACATACGGCTGCAGTGGGGCCTGGATGGCCAACGCTTATGATTATGTGATTAACAACGGGCTGCAAGCCTCTGAAACATACCCTTATACTTCAGTGGACACACAGCCCTGCTTCTATGATAGCAACAAAGTTGTGGCACAAATCAATGACTACAGGTTCATTCCTACTGGAGATGAACAGGCTTTGGCTGACGCTTTGGCAACTATCGGTCCGATCACTGTAGCGGTTGATGCTGACCACCCAAGCTTTCTGTTCTACAGCTCAGGAATCTATGAGGAGCCGAGATGTAATCCGAACAACCTGAGCCATGCAGTGCTTCTGGTCGGCTACGGCTCAGAGGGCGGCAGAGACTACTGGATCATCAAAAACAGCTGGGGCACAGGTTGGGGAGAAGGAGGATATATGCGCATGATCCGAAACGGCAGCAACACCTGTGGCATCGCTAGCTATGCTCTCTACCCCATTGTATAAGATCTTTTTGTATCTCTCAATTAAA

Function

NR:

description
cathepsin L1-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927907.2 True 1147 mRNA 0.48 8 14581544 14587731

Neighbor

gene id symbol gene type direction distance location
ttc39c ttc39c,LOC108270684,LOC108429509,LOC107653643,LOC107669847 coding downstream 32936 14527131 ~ 14548608 (-)
LOC113534236 NA coding downstream 59884 14517370 ~ 14521660 (-)
matk matk coding downstream 146570 14420490 ~ 14434974 (-)
cherp cherp coding downstream 176049 14390531 ~ 14405495 (-)
calr3a calr3,calr3a,LOC107702625,LOC107717161,LOC107561598 coding downstream 198779 14375485 ~ 14382765 (-)
plekhb2 plekhb2,LOC106613863 coding upstream 26909 14614640 ~ 14619685 (-)
stx6 stx6,LOC107715114,LOC107731540,LOC107669815,LOC107653648 coding upstream 65972 14653703 ~ 14666953 (-)
patj patj,inadl,LOC107715056 coding upstream 123865 14711596 ~ 14838457 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 coding upstream 280192 14867923 ~ 15022648 (-)
nphs2 nphs2 coding upstream 539527 15127258 ~ 15132792 (-)
G181401 NA non-coding downstream 98360 14481529 ~ 14483184 (-)
G181298 NA non-coding downstream 145930 14435301 ~ 14435614 (-)
G181207 NA non-coding downstream 377813 14156503 ~ 14203731 (-)
G181205 NA non-coding downstream 444589 14136454 ~ 14136955 (-)
G181197 NA non-coding downstream 456621 14080499 ~ 14124923 (-)
G181453 NA non-coding upstream 38704 14626435 ~ 14627355 (-)
G181462 NA non-coding upstream 48501 14636232 ~ 14636441 (-)
G181463 LOC108270690 non-coding upstream 49991 14637722 ~ 14638851 (-)
G181465 NA non-coding upstream 52865 14640596 ~ 14640859 (-)
G181467 NA non-coding upstream 54161 14641892 ~ 14642476 (-)
lama3 LOC108270685 other downstream 1797 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 73934 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 87685 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 121207 14437360 ~ 14460337 (-)
rx1 LOC108270609 other downstream 166475 14408726 ~ 14415069 (-)
G182210 NA other upstream 1103043 15690774 ~ 15692350 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 1687151 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 2658041 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 2755084 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 4728388 19316119 ~ 19316374 (-)

Expression


Co-expression Network