LOC113534236


Basic Information

Item Value
gene id LOC113534236
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14517370 ~ 14521660 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926902.2
TTTCCTTTAGAACGTTATCACTTTAGTCATTTTTGGTCAAGCGTCTATTCTGTCGctttactgcagtgattaatacaATTGTGCTTTCTGAGAAACGGATGGCTGATAAAAGTGAAGCGTGTGACCCATGGCCCACGGTGATATTGCCCTATGGCCTGAAGACGTTGCTGGAATGCCTGAGCAGGGCGCTGTTAATCGAGCGAGCGGAAAACATCCGCCGGTTCTTCGCTGATTACACGGCTGAGCTGCTCGTGTACAGAAACCAAAACCCATCACTGGACCTGAAAGAAGTCATGATTAGATTTCAAACTAGGAGAGAAGTAATCTTAAAAAGATCATCTAAAAAGAGGAAGTGTATGAAGAGTGAAGAAGCTAGCGATATAGGAAAGGAAAGTGAGAAGTCTTCCCCAAACCTCTTCTCAACCAGTCAAGAAGATGCTTTACTGAGCAATGAAGAATCATCGAATGGTGTAGACAGAACTCACTCCAGTGAAGTCAGTCTCACACCGCCTGAATACGTTCCTGATGTCAAGCTCCTACAGGAAACACTACTGGGCGAAGACAAGTATCTTGCCAATGAACAAACTTCAAAGAGAGGATTTACTGCAAGATGCTCAAGCTCAGAAACTCAGTCTGTGCAATCTGACCAAGCACCATCTCCAAAGAGTTCTTCTGAGGAGATTGAGACTGAAACAAGAACAACGTTGCCTTCAAAGAGACtgtcaccatcatcatcaccatcaccatcttaTCCAAGAAGCCCTTCCTCTGTAGAGTTTCTCTCAGATGATTACAGAAAAGCAAAAGCACTGTACATGGAAAAGGAAATGAGGCAGCTGTCACAACATTCAAGCAGAATGTCTTCTAAGGCTCTGGAGAAGATTCTTCCTCCCATGAATAAGATTTCAGCAATGTCCTCTGCACCTGGAAAGCCATGCCGTTTGCTACCCAAAAGACAGACGGCAGCAAAGGAATCATTTCTAGGAAGGGCAGAAAATGTAACTGTAACAAAATCAGGAAAGTCAAAGGAAGACGCAAAATTGCCTCCAATACCATCATCACACAGAGGAAGGCCAGACAGTCACGATCTGAGAAAACCAGGACCACTGAGGTCAACGgagaaaataacatttcttCCTCAAATAGGTACTAAATCACAGAGACCAGGACCAATCCAGGCTATCAGAGTCAGCTCAACACCttcagaggaggaagaagacaCCGAAAACGAAATCTGGACATTATACCATCTTCCACACAGGAGGGAAGAGGGAATATTATCTACCACAGTCCTCTCGCAGCCACAGTACCGAAACGGGGCGACAATCCAGACCATCAGACCTGGCTATGTTGTAGTCGCGGCATGTCCGACCACCAGATCACCGATTGATCAGAAGTTTATCCACGGCCGCCGTTACCGAGTCAGTACTCTCGGTTCTGGGCAGAGGCTTACTGGAGTTGACCACGATTATATGGTGATCAGACCGCCTCCTTATCAATGTAACAATATTTAGCCCTGAGCCAAAGATataaatacagtggatataaaaagtctacacacttcTCTTAAATTGGTAGGTTTTTATGAACTAAAACTATGAAACTaggataaatcatgtcagatcttttccccaccattaatgtgaaattgcaaagtatacaaaataaagtgaaaaacaa
>XM_026926909.2
TTTCCTTTAGAACGTTATCACTTTAGTCATTTTTGGTCAAGCGTCTATTCTGTCGctttactgcagtgattaatacaATTGTGCTTTCTGAGAAACGGATGGCTGATAAAAGTGAAGCGTGTGACCCATGGCCCACGGTGATATTGCCCTATGGCCTGAAGACGTTGCTGGAATGCCTGAGCAGGGCGCTGTTAATCGAGCGAGCGGAAAACATCCGCCGGTTCTTCGCTGATTACACGGCTGAGCTGCTCGTGTACAGAAACCAAAACCCATCACTGGACCTGAAAGAAGTCATGATTAGATTTCAAACTAGGAGAGAAGTAATCTTAAAAAGATCATCTAAAAAGAGGAAGTGTATGAAGAGTGAAGAAGCTAGCGATATAGGAAAGGAAAGTGAGAAGTCTTCCCCAAACCTCTTCTCAACCAGTCAAGATGCTTTACTGAGCAATGAAGAATCATCGAATGGTGTAGACAGAACTCACTCCAGTGAAGTCAGTCTCACACCGCCTGAATACGTTCCTGATGTCAAGCTCCTACAGGAAACACTACTGGGCGAAGACAAGTATCTTGCCAATGAACAAACTTCAAAGAGAGGATTTACTGCAAGATGCTCAAGCTCAGAAACTCAGTCTGTGCAATCTGACCAAGCACCATCTCCAAAGAGTTCTTCTGAGGAGATTGAGACTGAAACAAGAACAACGTTGCCTTCAAAGAGACtgtcaccatcatcatcaccatcaccatcttaTCCAAGAAGCCCTTCCTCTGTAGAGTTTCTCTCAGATGATTACAGAAAAGCAAAAGCACTGTACATGGAAAAGGAAATGAGGCAGCTGTCACAACATTCAAGCAGAATGTCTTCTAAGGCTCTGGAGAAGATTCTTCCTCCCATGAATAAGATTTCAGCAATGTCCTCTGCACCTGGAAAGCCATGCCGTTTGCTACCCAAAAGACAGACGGCAGCAAAGGAATCATTTCTAGGAAGGGCAGAAAATGTAACTGTAACAAAATCAGGAAAGTCAAAGGAAGACGCAAAATTGCCTCCAATACCATCATCACACAGAGGAAGGCCAGACAGTCACGATCTGAGAAAACCAGGACCACTGAGGTCAACGgagaaaataacatttcttCCTCAAATAGGTACTAAATCACAGAGACCAGGACCAATCCAGGCTATCAGAGTCAGCTCAACACCttcagaggaggaagaagacaCCGAAAACGAAATCTGGACATTATACCATCTTCCACACAGGAGGGAAGAGGGAATATTATCTACCACAGTCCTCTCGCAGCCACAGTACCGAAACGGGGCGACAATCCAGACCATCAGACCTGGCTATGTTGTAGTCGCGGCATGTCCGACCACCAGATCACCGATTGATCAGAAGTTTATCCACGGCCGCCGTTACCGAGTCAGTACTCTCGGTTCTGGGCAGAGGCTTACTGGAGTTGACCACGATTATATGGTGATCAGACCGCCTCCTTATCAATGTAACAATATTTAGCCCTGAGCCAAAGATataaatacagtggatataaaaagtctacacacttcTCTTAAATTGGTAGGTTTTTATGAACTAAAACTATGAAACTaggataaatcatgtcagatcttttccccaccattaatgtgaaattgcaaagtatacaaaataaagtgaaaaacaa
>XM_026926915.2
TTTCCTTTAGAACGTTATCACTTTAGTCATTTTTGGTCAAGCGTCTATTCTGTCGctttactgcagtgattaatacaATTGTGCTTTCTGAGAAACGGATGGCTGATAAAAGTGAAGCGTGTGACCCATGGCCCACGGTGATATTGCCCTATGGCCTGAAGACGTTGCTGGAATGCCTGAGCAGGGCGCTGTTAATCGAGCGAGCGGAAAACATCCGCCGGTTCTTCGCTGATTACACGGCTGAGCTGCTCGTGTACAGAAACCAAAACCCATCACTGGACCTGAAAGAAGTCATGATTAGATTTCAAACTAGGAGAGAAGATGCTTTACTGAGCAATGAAGAATCATCGAATGGTGTAGACAGAACTCACTCCAGTGAAGTCAGTCTCACACCGCCTGAATACGTTCCTGATGTCAAGCTCCTACAGGAAACACTACTGGGCGAAGACAAGTATCTTGCCAATGAACAAACTTCAAAGAGAGGATTTACTGCAAGATGCTCAAGCTCAGAAACTCAGTCTGTGCAATCTGACCAAGCACCATCTCCAAAGAGTTCTTCTGAGGAGATTGAGACTGAAACAAGAACAACGTTGCCTTCAAAGAGACtgtcaccatcatcatcaccatcaccatcttaTCCAAGAAGCCCTTCCTCTGTAGAGTTTCTCTCAGATGATTACAGAAAAGCAAAAGCACTGTACATGGAAAAGGAAATGAGGCAGCTGTCACAACATTCAAGCAGAATGTCTTCTAAGGCTCTGGAGAAGATTCTTCCTCCCATGAATAAGATTTCAGCAATGTCCTCTGCACCTGGAAAGCCATGCCGTTTGCTACCCAAAAGACAGACGGCAGCAAAGGAATCATTTCTAGGAAGGGCAGAAAATGTAACTGTAACAAAATCAGGAAAGTCAAAGGAAGACGCAAAATTGCCTCCAATACCATCATCACACAGAGGAAGGCCAGACAGTCACGATCTGAGAAAACCAGGACCACTGAGGTCAACGgagaaaataacatttcttCCTCAAATAGGTACTAAATCACAGAGACCAGGACCAATCCAGGCTATCAGAGTCAGCTCAACACCttcagaggaggaagaagacaCCGAAAACGAAATCTGGACATTATACCATCTTCCACACAGGAGGGAAGAGGGAATATTATCTACCACAGTCCTCTCGCAGCCACAGTACCGAAACGGGGCGACAATCCAGACCATCAGACCTGGCTATGTTGTAGTCGCGGCATGTCCGACCACCAGATCACCGATTGATCAGAAGTTTATCCACGGCCGCCGTTACCGAGTCAGTACTCTCGGTTCTGGGCAGAGGCTTACTGGAGTTGACCACGATTATATGGTGATCAGACCGCCTCCTTATCAATGTAACAATATTTAGCCCTGAGCCAAAGATataaatacagtggatataaaaagtctacacacttcTCTTAAATTGGTAGGTTTTTATGAACTAAAACTATGAAACTaggataaatcatgtcagatcttttccccaccattaatgtgaaattgcaaagtatacaaaataaagtgaaaaacaa
>XM_026926916.2
TTTCCTTTAGAACGTTATCACTTTAGTCATTTTTGGTCAAGCGTCTATTCTGTCGctttactgcagtgattaatacaATTGTGCTTTCTGAGAAACGGATGGCTGATAAAAGTGAAGCGTGTGACCCATGGCCCACGGTGATATTGCCCTATGGCCTGAAGACGTTGCTGGAATGCCTGAGCAGGGCGCTGTTAATCGAGCGAGCGGAAAACATCCGCCGGTTCTTCGCTGATTACACGGCTGAGCTGCTCGTGTACAGAAACCAAAACCCATCACTGGACCTGAAAGAAGTCATGATTAGATTTCAAACTAGGAGAGATGCTTTACTGAGCAATGAAGAATCATCGAATGGTGTAGACAGAACTCACTCCAGTGAAGTCAGTCTCACACCGCCTGAATACGTTCCTGATGTCAAGCTCCTACAGGAAACACTACTGGGCGAAGACAAGTATCTTGCCAATGAACAAACTTCAAAGAGAGGATTTACTGCAAGATGCTCAAGCTCAGAAACTCAGTCTGTGCAATCTGACCAAGCACCATCTCCAAAGAGTTCTTCTGAGGAGATTGAGACTGAAACAAGAACAACGTTGCCTTCAAAGAGACtgtcaccatcatcatcaccatcaccatcttaTCCAAGAAGCCCTTCCTCTGTAGAGTTTCTCTCAGATGATTACAGAAAAGCAAAAGCACTGTACATGGAAAAGGAAATGAGGCAGCTGTCACAACATTCAAGCAGAATGTCTTCTAAGGCTCTGGAGAAGATTCTTCCTCCCATGAATAAGATTTCAGCAATGTCCTCTGCACCTGGAAAGCCATGCCGTTTGCTACCCAAAAGACAGACGGCAGCAAAGGAATCATTTCTAGGAAGGGCAGAAAATGTAACTGTAACAAAATCAGGAAAGTCAAAGGAAGACGCAAAATTGCCTCCAATACCATCATCACACAGAGGAAGGCCAGACAGTCACGATCTGAGAAAACCAGGACCACTGAGGTCAACGgagaaaataacatttcttCCTCAAATAGGTACTAAATCACAGAGACCAGGACCAATCCAGGCTATCAGAGTCAGCTCAACACCttcagaggaggaagaagacaCCGAAAACGAAATCTGGACATTATACCATCTTCCACACAGGAGGGAAGAGGGAATATTATCTACCACAGTCCTCTCGCAGCCACAGTACCGAAACGGGGCGACAATCCAGACCATCAGACCTGGCTATGTTGTAGTCGCGGCATGTCCGACCACCAGATCACCGATTGATCAGAAGTTTATCCACGGCCGCCGTTACCGAGTCAGTACTCTCGGTTCTGGGCAGAGGCTTACTGGAGTTGACCACGATTATATGGTGATCAGACCGCCTCCTTATCAATGTAACAATATTTAGCCCTGAGCCAAAGATataaatacagtggatataaaaagtctacacacttcTCTTAAATTGGTAGGTTTTTATGAACTAAAACTATGAAACTaggataaatcatgtcagatcttttccccaccattaatgtgaaattgcaaagtatacaaaataaagtgaaaaacaa

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926902.2 True 1680 mRNA 0.44 8 14517370 14521660
XM_026926909.2 False 1677 mRNA 0.44 8 14517370 14521660
XM_026926915.2 False 1566 mRNA 0.44 7 14517370 14521660
XM_026926916.2 False 1563 mRNA 0.44 7 14517370 14521660

Neighbor

gene id symbol gene type direction distance location
matk matk coding downstream 82396 14420490 ~ 14434974 (-)
cherp cherp coding downstream 111875 14390531 ~ 14405495 (-)
calr3a calr3,calr3a,LOC107702625,LOC107717161,LOC107561598 coding downstream 134605 14375485 ~ 14382765 (-)
rad23ab LOC108271249,LOC107704496,LOC107717165 coding downstream 143342 14362323 ~ 14374028 (-)
fbn2b fbn3,fbn2b,LOC108441289,LOC106573567,LOC106613712 coding downstream 199533 14241303 ~ 14317837 (-)
ttc39c ttc39c,LOC108270684,LOC108429509,LOC107653643,LOC107669847 coding upstream 5471 14527131 ~ 14548608 (-)
cts12 LOC108270686,LOC103033790 coding upstream 59884 14581544 ~ 14587731 (-)
plekhb2 plekhb2,LOC106613863 coding upstream 92980 14614640 ~ 14619685 (-)
stx6 stx6,LOC107715114,LOC107731540,LOC107669815,LOC107653648 coding upstream 132043 14653703 ~ 14666953 (-)
patj patj,inadl,LOC107715056 coding upstream 189936 14711596 ~ 14838457 (-)
G181401 NA non-coding downstream 34186 14481529 ~ 14483184 (-)
G181298 NA non-coding downstream 81756 14435301 ~ 14435614 (-)
G181207 NA non-coding downstream 313639 14156503 ~ 14203731 (-)
G181205 NA non-coding downstream 380415 14136454 ~ 14136955 (-)
G181197 NA non-coding downstream 392447 14080499 ~ 14124923 (-)
G181453 NA non-coding upstream 104775 14626435 ~ 14627355 (-)
G181462 NA non-coding upstream 114572 14636232 ~ 14636441 (-)
G181463 LOC108270690 non-coding upstream 116062 14637722 ~ 14638851 (-)
G181465 NA non-coding upstream 118936 14640596 ~ 14640859 (-)
G181467 NA non-coding upstream 120232 14641892 ~ 14642476 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 9760 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 23511 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 57033 14437360 ~ 14460337 (-)
rx1 LOC108270609 other downstream 102301 14408726 ~ 14415069 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other downstream 155723 14358520 ~ 14361647 (-)
lama3 LOC108270685 other upstream 29246 14550906 ~ 14579747 (-)
G182210 NA other upstream 1169114 15690774 ~ 15692350 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 1753222 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 2724112 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 2821155 17342815 ~ 17352369 (-)

Expression


Co-expression Network