ttc39c (ttc39c,LOC108270684,LOC108429509,LOC107653643,LOC107669847)


Basic Information

Item Value
gene id ttc39c
gene name ttc39c,LOC108270684,LOC108429509,LOC107653643,LOC107669847
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14527131 ~ 14548608 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941582.2
TTGGTGCGCCGCTTCGGGGAAATCCGGCAGAAATGAATGAGGAGCGAAAATATCTGCTTGTACTTAGACTTGACGCTGCTGGGAGGATTGTCACACCGTGTGAATGATCAGGAtggtaaacaataaaaatgagtgGATGCTCTAGTTGATTTGAAACAATATGACAGGTTTAGAGTAGATGAATGTGGCAGGGATTGCACTGTGCAGAGGACGTGTGGCCTgaacagcagtgtttttctCACAATATTTGCGAGCTAAATCTTGGCTGAAACGCACGTCGCTAAGGTTTGGACAGGCGCACGAAAAGTATAAAAATTCCCAGCTGTGGTTTCATATCATTTTCGGCTACGTTTAGGACTGTTTTAGGATTGGCCTGTCATTTTGATGTTTTCTCTACGCTTGGTATTCGTTGTTAATCGCCCTTCTGTGTGAGCGCATGCGCAATGGCAGGCCGCGagcagcatcagcatcagcatcagcatcagcaccATCCGCAGGTGGAGATGAAGGCAGAGCTGGATGATGCGGAGCTGGCACTGCAGGGCATAAGTATGCTCCTCAACAATGGGTTCAAGGAAAGCGACGAGCTCTTCAGGAGATACAGGACCCAAAGTCCATTGATGAGCTTCGGAGCCAGTTTCGTGTCCTTCCTGAATGCCATGATGACGTTTGAGGAGGAAAAGATGCAGATGGCCTGTGATGACCTGCGTACCACAGAGAAGCTGTGTGAGAGTGACAACGCTGGTGTCATCGAGACCATCCGCAATAAAATCAAGAAAAGTATGGACTCTCAGACGTCAGGGTTGGCAACAGTGGATCGGCTCCAAAGGCAGATCATAGTGGCCGACTGTCAGGTCTACCTCGCTGTGCTCTCCTTCATCAAGCAGGAACTCTCAGCATACATTAAAGGAGGCTGGATCCTCCGCAAGGCTTGGAAGATGTACAACAAATGCTACAGTGACATTAGCCAGCTTCAGGAGACATGTCGCAGACGTTCCTCTGATCAGACAAATCACAATACGTCGGTTGCCGAGAGCAGTGGGGGGCTGACGGAGGAGGCACTGGGGCGTCTGAAGGGCTCAGTTAGTTTTGGCTACGGCCTTTTCCATCTCTGCATCTCTATGGTTCCTCCCCACTTACTGAAGATTGTCAATCTGCTGGGATTCCCAGGAGATCGACACCAGGGCCTGGCGTCACTCATCTACGCCAGTGAGAGCAGAGACATGAAAGCACCACTGGCCACGCTGGCTCTCTTGTGGTACCACACAGTGGTGCAGCCCTTCTTCGCTCTGGATGGCTCTGATTCCCGGGCTGGGCTGCTTGAAGCCAAAACCATCCTGCAGAAGAAAGCAGTAATTTACCCCAACTCCTCTCTCTTCATCTTCTTCAGAGGACGAGTACAGAGGTTAGAGtgccAGATAAACAGTGCATTGGCATCTTTCCATGATGCCCTGGAGTTTGCTTCAGACCAAAGAGAGATCCAACATGTGTGTCTCTATGAGATCGGGTGGTGCAGTATGATTGAGATGAACTTTGAAGATGCTTATCAGGCTTTTGAAAGACTAAAAAATGAGTCCCGGTGGTCACAATGCTACTACGCTTACCTAACTGGAGTATGCCAGGGTGCGTCGGATGATTTGGAGGGGGCAAACACTGTTTTCCGAGATGTGCCTAAGCTCTTCAAACGCAAGAACAATCAGATTGAGCAGTTTGCATTCAGGAGGGCAGAGCGATTGAGGAAGCTGGGTGCGACACAGGAGCTGTGTATTCTCGGAGTTGTAGAGGTGCTCTACCTGTGGAAGGCTCTTGCAAATTGCTCATCCTCCAAACTGCAGCTCATGAGCCAAGtGCTGCAGGGTCTGGATGATCCATCCTGCCAGGGTTTAAAACACCTGCTTCTCGGTGCTATACAGAAGTGTCTCGGAAACATTAAAGATGCTGTCCAGTCATACCAGATGGCAGCCAGGGATGAGCTGGGCCGACTGAACAACTCTTACGTGCAGCCGTACGCCTACTACGAGCTTGGATGTGTATTATTGGCTAAACCTGAGACTTTGAGTAAAGGAAGGTCATTGCTGCTTCAGGCAAAGGAGAACTGTGCAGGATATGACTTTGAGAACAGACTGCACGTGCGAATCCACACAGCCCTCGCCTCTGTGAAGGAAGTGGTTCCTCTGTGACCCCAACCGACCCAGGAAGTGCATTATACAGGGACCAGTCCTGTTTGGCACCTTTTAAAATGCGAGccattataatgattttttttctctttcttttttttagtgaaaACCAAAATGATGACAAATTATTTTCTAGGTGGCTAGGTTGATCACCAGTAGTGTTTCTTGTTTTCATGTAGTAGATTATGCTTAAAGTAGAGTATATTGCCACAGTTTAGAGTTCACTTAAAGGTAGCTGACCCATTACACTGatgaatgtttctgtttctgaatgttttgtCTTCTCTGGCTTTCAGTATGTGTTGGGTTTTCAGAACATCTtggaaaggtgtcagaaaatTTTCTGAATTTGGGTggctttatcattttaaaatttatgataATTTAAGAATGAGTGTCATGAGAATGATAGTAGATTAACACTACCTACCTAACACTACCTAACACTATtactatatttacacacacattaatgtcaGAGGATGGCAGTATTCTGACTAAGGCCTCTATCACATTGCAAATGTTTCTCTAATAAGCATATACCCACTGAATGAAATAGAACTGAATGAATTTACCCATTAACTTTGCATTTTTTACATTAT

Function

symbol description
ttc39c Acts upstream of or within cilium assembly; determination of heart left/right asymmetry; and otolith morphogenesis. Is expressed in nervous system and trigeminal placode. Orthologous to human TTC39C (tetratricopeptide repeat domain 39C).

NR:

description
PREDICTED: tetratricopeptide repeat protein 39C

GO: NA

KEGG:

id description
K24943 TTC39; tetratricopeptide repeat protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941582.2 True 2782 mRNA 0.46 14 14527131 14548608

Neighbor

gene id symbol gene type direction distance location
LOC113534236 NA coding downstream 5471 14517370 ~ 14521660 (-)
matk matk coding downstream 92157 14420490 ~ 14434974 (-)
cherp cherp coding downstream 121636 14390531 ~ 14405495 (-)
calr3a calr3,calr3a,LOC107702625,LOC107717161,LOC107561598 coding downstream 144366 14375485 ~ 14382765 (-)
rad23ab LOC108271249,LOC107704496,LOC107717165 coding downstream 153103 14362323 ~ 14374028 (-)
cts12 LOC108270686,LOC103033790 coding upstream 32936 14581544 ~ 14587731 (-)
plekhb2 plekhb2,LOC106613863 coding upstream 66032 14614640 ~ 14619685 (-)
stx6 stx6,LOC107715114,LOC107731540,LOC107669815,LOC107653648 coding upstream 105095 14653703 ~ 14666953 (-)
patj patj,inadl,LOC107715056 coding upstream 162988 14711596 ~ 14838457 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 coding upstream 319315 14867923 ~ 15022648 (-)
G181401 NA non-coding downstream 43947 14481529 ~ 14483184 (-)
G181298 NA non-coding downstream 91517 14435301 ~ 14435614 (-)
G181207 NA non-coding downstream 323400 14156503 ~ 14203731 (-)
G181205 NA non-coding downstream 390176 14136454 ~ 14136955 (-)
G181197 NA non-coding downstream 402208 14080499 ~ 14124923 (-)
G181453 NA non-coding upstream 77827 14626435 ~ 14627355 (-)
G181462 NA non-coding upstream 87624 14636232 ~ 14636441 (-)
G181463 LOC108270690 non-coding upstream 89114 14637722 ~ 14638851 (-)
G181465 NA non-coding upstream 91988 14640596 ~ 14640859 (-)
G181467 NA non-coding upstream 93284 14641892 ~ 14642476 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 19521 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 33272 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 66794 14437360 ~ 14460337 (-)
rx1 LOC108270609 other downstream 112062 14408726 ~ 14415069 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other downstream 165484 14358520 ~ 14361647 (-)
lama3 LOC108270685 other upstream 2298 14550906 ~ 14579747 (-)
G182210 NA other upstream 1142166 15690774 ~ 15692350 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 1726274 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 2697164 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 2794207 17342815 ~ 17352369 (-)

Expression


Co-expression Network