RNA id: XM_026941582.2


Basic Information

Item Value
RNA id XM_026941582.2
length 2782
RNA type mRNA
GC content 0.46
exon number 14
gene id ttc39c
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14527131 ~ 14548608 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGTGCGCCGCTTCGGGGAAATCCGGCAGAAATGAATGAGGAGCGAAAATATCTGCTTGTACTTAGACTTGACGCTGCTGGGAGGATTGTCACACCGTGTGAATGATCAGGAtggtaaacaataaaaatgagtgGATGCTCTAGTTGATTTGAAACAATATGACAGGTTTAGAGTAGATGAATGTGGCAGGGATTGCACTGTGCAGAGGACGTGTGGCCTgaacagcagtgtttttctCACAATATTTGCGAGCTAAATCTTGGCTGAAACGCACGTCGCTAAGGTTTGGACAGGCGCACGAAAAGTATAAAAATTCCCAGCTGTGGTTTCATATCATTTTCGGCTACGTTTAGGACTGTTTTAGGATTGGCCTGTCATTTTGATGTTTTCTCTACGCTTGGTATTCGTTGTTAATCGCCCTTCTGTGTGAGCGCATGCGCAATGGCAGGCCGCGagcagcatcagcatcagcatcagcatcagcaccATCCGCAGGTGGAGATGAAGGCAGAGCTGGATGATGCGGAGCTGGCACTGCAGGGCATAAGTATGCTCCTCAACAATGGGTTCAAGGAAAGCGACGAGCTCTTCAGGAGATACAGGACCCAAAGTCCATTGATGAGCTTCGGAGCCAGTTTCGTGTCCTTCCTGAATGCCATGATGACGTTTGAGGAGGAAAAGATGCAGATGGCCTGTGATGACCTGCGTACCACAGAGAAGCTGTGTGAGAGTGACAACGCTGGTGTCATCGAGACCATCCGCAATAAAATCAAGAAAAGTATGGACTCTCAGACGTCAGGGTTGGCAACAGTGGATCGGCTCCAAAGGCAGATCATAGTGGCCGACTGTCAGGTCTACCTCGCTGTGCTCTCCTTCATCAAGCAGGAACTCTCAGCATACATTAAAGGAGGCTGGATCCTCCGCAAGGCTTGGAAGATGTACAACAAATGCTACAGTGACATTAGCCAGCTTCAGGAGACATGTCGCAGACGTTCCTCTGATCAGACAAATCACAATACGTCGGTTGCCGAGAGCAGTGGGGGGCTGACGGAGGAGGCACTGGGGCGTCTGAAGGGCTCAGTTAGTTTTGGCTACGGCCTTTTCCATCTCTGCATCTCTATGGTTCCTCCCCACTTACTGAAGATTGTCAATCTGCTGGGATTCCCAGGAGATCGACACCAGGGCCTGGCGTCACTCATCTACGCCAGTGAGAGCAGAGACATGAAAGCACCACTGGCCACGCTGGCTCTCTTGTGGTACCACACAGTGGTGCAGCCCTTCTTCGCTCTGGATGGCTCTGATTCCCGGGCTGGGCTGCTTGAAGCCAAAACCATCCTGCAGAAGAAAGCAGTAATTTACCCCAACTCCTCTCTCTTCATCTTCTTCAGAGGACGAGTACAGAGGTTAGAGtgccAGATAAACAGTGCATTGGCATCTTTCCATGATGCCCTGGAGTTTGCTTCAGACCAAAGAGAGATCCAACATGTGTGTCTCTATGAGATCGGGTGGTGCAGTATGATTGAGATGAACTTTGAAGATGCTTATCAGGCTTTTGAAAGACTAAAAAATGAGTCCCGGTGGTCACAATGCTACTACGCTTACCTAACTGGAGTATGCCAGGGTGCGTCGGATGATTTGGAGGGGGCAAACACTGTTTTCCGAGATGTGCCTAAGCTCTTCAAACGCAAGAACAATCAGATTGAGCAGTTTGCATTCAGGAGGGCAGAGCGATTGAGGAAGCTGGGTGCGACACAGGAGCTGTGTATTCTCGGAGTTGTAGAGGTGCTCTACCTGTGGAAGGCTCTTGCAAATTGCTCATCCTCCAAACTGCAGCTCATGAGCCAAGtGCTGCAGGGTCTGGATGATCCATCCTGCCAGGGTTTAAAACACCTGCTTCTCGGTGCTATACAGAAGTGTCTCGGAAACATTAAAGATGCTGTCCAGTCATACCAGATGGCAGCCAGGGATGAGCTGGGCCGACTGAACAACTCTTACGTGCAGCCGTACGCCTACTACGAGCTTGGATGTGTATTATTGGCTAAACCTGAGACTTTGAGTAAAGGAAGGTCATTGCTGCTTCAGGCAAAGGAGAACTGTGCAGGATATGACTTTGAGAACAGACTGCACGTGCGAATCCACACAGCCCTCGCCTCTGTGAAGGAAGTGGTTCCTCTGTGACCCCAACCGACCCAGGAAGTGCATTATACAGGGACCAGTCCTGTTTGGCACCTTTTAAAATGCGAGccattataatgattttttttctctttcttttttttagtgaaaACCAAAATGATGACAAATTATTTTCTAGGTGGCTAGGTTGATCACCAGTAGTGTTTCTTGTTTTCATGTAGTAGATTATGCTTAAAGTAGAGTATATTGCCACAGTTTAGAGTTCACTTAAAGGTAGCTGACCCATTACACTGatgaatgtttctgtttctgaatgttttgtCTTCTCTGGCTTTCAGTATGTGTTGGGTTTTCAGAACATCTtggaaaggtgtcagaaaatTTTCTGAATTTGGGTggctttatcattttaaaatttatgataATTTAAGAATGAGTGTCATGAGAATGATAGTAGATTAACACTACCTACCTAACACTACCTAACACTATtactatatttacacacacattaatgtcaGAGGATGGCAGTATTCTGACTAAGGCCTCTATCACATTGCAAATGTTTCTCTAATAAGCATATACCCACTGAATGAAATAGAACTGAATGAATTTACCCATTAACTTTGCATTTTTTACATTAT

Function

GO: NA

KEGG:

id description
K24943 TTC39; tetratricopeptide repeat protein 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214704 lncRNA downstream 28355 14497201 ~ 14498776 (-) False tnfaip8l1
TU214706 lncRNA downstream 35643 14487389 ~ 14491488 (-) False LOC113532209
TU214699 lncRNA downstream 43947 14481529 ~ 14483184 (-) True G181401
TU214672 lncRNA downstream 89097 14437401 ~ 14438034 (-) False zfr2
TU214767 lncRNA upstream 77827 14626435 ~ 14627355 (-) True G181453
TU214776 lncRNA upstream 87624 14636232 ~ 14636441 (-) True G181462
TU214777 lncRNA upstream 89114 14637722 ~ 14638851 (-) True G181463
TU214782 lncRNA upstream 91988 14640596 ~ 14640859 (-) True G181465
TU214784 lncRNA upstream 93284 14641892 ~ 14642476 (-) True G181467
XM_026926916.2 mRNA downstream 5471 14517370 ~ 14521660 (-) False LOC113534236
XM_026926915.2 mRNA downstream 5471 14517370 ~ 14521660 (-) False LOC113534236
XM_026926909.2 mRNA downstream 5471 14517370 ~ 14521660 (-) False LOC113534236
XM_026926902.2 mRNA downstream 5471 14517370 ~ 14521660 (-) True LOC113534236
XM_026922917.2 mRNA downstream 19521 14497150 ~ 14507610 (-) True tnfaip8l1
XM_026936397.2 mRNA upstream 2298 14550906 ~ 14579747 (-) False lama3
XM_026936319.2 mRNA upstream 2298 14550906 ~ 14579747 (-) True lama3
XM_026927907.2 mRNA upstream 32936 14581544 ~ 14587731 (-) True cts12
XM_026930377.2 mRNA upstream 66032 14614640 ~ 14619685 (-) False plekhb2
XM_026930367.2 mRNA upstream 66032 14614640 ~ 14619685 (-) True plekhb2
XR_003402957.2 other downstream 66794 14439854 ~ 14460337 (-) False zfr2
XR_004579086.1 other downstream 112062 14408726 ~ 14415069 (-) False rx1
TU214564 other downstream 165484 14360936 ~ 14361647 (-) False LOC113527598
TU214009 other downstream 1283969 13239749 ~ 13243162 (-) False rpp21
trnam-cau_27 other downstream 1290656 13236403 ~ 13236475 (-) True trnam-cau_27
XR_004579061.1 other upstream 4547 14553155 ~ 14579747 (-) False lama3
TU215666 other upstream 1142166 15690774 ~ 15692350 (-) True G182210
TU216001 other upstream 1726274 16274882 ~ 16278809 (-) True micos13
TU216002 other upstream 1727060 16275668 ~ 16278809 (-) False micos13
TU216000 other upstream 1727258 16275866 ~ 16278809 (-) False micos13

Expression Profile