RNA id: XM_026936397.2


Basic Information

Item Value
RNA id XM_026936397.2
length 5593
RNA type mRNA
GC content 0.44
exon number 38
gene id lama3
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14550906 ~ 14579747 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTGGATGTGTGCAGTTTGgagaaataacatttttcacataattggCCTTTGGAGTAGATGTGGAAACCCAGAGATTTGGCacttaaattgtttatttttcatttcttcattctgGAAGTGAATGTCAGAGCTTCTGCTTGGAAATGGCAGGTAGGATGAGCTATATATGGATCCTGCTGCTCTGCAGTTTGGCCGGATCAGGACTCTGTCTCGTGGACCAACCCAGTAAGGACTGTGGCCCTGGACAGTACAGGGCGAGACGGGGACCATACAGAGGACAGTGTGTCCCCTGTAATTGCAATGGTTTCTCCCATGAGTGTGACCAAAACACAGGGAAATGCTTGAACTGCCAGTTGAACACAGCAGGGGATCACTGTGAGCACTGTGCTGAGGGACACTATGGCATCGCTGCTCTCAGGACCTGCCGACTGTGTCCATGTCCCTTCTCACAACCGTCTCACAGTTTTGCCATTGGTTGTCTGGAGGTTGGAGGTCATGTTGAATGCCTGTGCAAGGCTGGTTATTCTGGAACCCACTGTGAAAGGTGTGCCATTGGGTATTACGGTGACCCGCTAGCTGGAAGGAGTTGTCAGCTCTGTGACTGCAATCATGGATACATCTGTGACCCCATTACAGGCAAATGTGAATCTCCAGATGAGCCAAGTACTGATAATGACTGCCAAGAGTGTGATAGTTGCTTTCAGACATTAATGGATGCTTTAGAGGCAATGGATGATGAGCTCGCCATCCTCAAGGCCCAACTCAAGTTTCAGAGAAACATCTCCATAAGTCTTACTGCTCTGAGAATACTAGAAGATGACATTATTGCTACAAAGgaGCTAGTAAAAAATTACAGAGAATCTGTTCGAGTGCTAAAGCATGGTGTTAGCGAACTTGAGGCAGACATGGATGGTGTCAGAAAAGACGTGATGAAACTTAAGATTAAGGCAGATCAAACTTCTTTAACCAGTAAGGATTTATTAAGGGATTTGaacaaaacacaccaaaagGGCCAAAACCTGCTCACTGATACTGAAGAACTTTTAAAAAGAATACAAGAATTCCTGGAACAACTGAGGATTTCAAACGGTATCGACTCCACTCTGTCCGGCAAGTTGCTGTCAGGCATACTGGAGGAGGCGCAACGGATGGTGGAACAGATGCGAAAGCAAAATTGTAAGGTGCAGAGGAAGCTGGCTGAGAATGAGCTCTGGGAAGCCCAAAAACTCTTAGACTACATCAAGAACAATCTCACCAGTCCCTTGGATAGTGCCCAGGCTACTGCTGAACAAATTGCTCAAGACCTGATGTCCTGGAATACTGGACTTAAAGAGCTAGAGGAAGCACTGAAACAGGCAGAGAAAGCTGTAAACAAAACAATTCTCATGAATGTTGGTAATGAAGAAGTTCTGTCAGATATTATGAATCATCATTTCATGTTTGAGAACAAGCAGGATGACATCTGGTCTGATCTGGCAATGATTAGAGGAACACTGAGAGACACGGAGGATCTTCAGAACATGATGAACAACCTAAAAAATgttTATGCAAAACTTGCAGCTGAACTGGATGGAGCAAAGTCACAGCTGAACCAGAGGCTTGTTGAGCTTTCTAAAGCCACGGCCATGGACGTTATCGTCAGAAAGGCAGAGGAGCATGCACAGGAGCTCATGGATCTTGCGATGCATTTTCAAATGTCTCTTCTAAGTTTCACCAACACTTCAGTTGTTCATAAAGCCATAGATGTGATCACTGCTTTTGAAGACATTATTAACGCTATCAAAGAAGCCGAGGCAGCAGCTAATAAAGCCAACAAAACTGCAGATCATGCCTTAGCGGATGTAAAAGCACAAGACCTGACCAAAAAGGCAGAAGAACTAAAGAATTCTGCAAACAGCCTGGATGACAAAGCTAAGGAAGCAGAAAATAATCTAAAAGAGGCTGTAGAAAAGTATGATACCATTAAAGAACGCCTGGACAAAGCAAAGGGCAAAAAAAGGGATATGCAGAAAGAGATCCAAACTCTCGAGGATGAGCTAAATGTAATCAACCGAGATCATATAGGTGCCCTTCTGAAACAAGCTAAGGATGCTGTGCAGGCTGCCAACAAAACAGTCAACAATGATACAGCACGTTTAAGGAACATTAGTGAGGAGTTGGACAAGATCAAAATACCCAGCGGTGAATCAAATGTGGACAACATACTCAACAGCGTCAACAAAACATTGGATGAACTGAACAAATTCTTCCCCAACCTGACTGATACTCTGGCTGAAGTGGAGAATCAGAGCAGCCGGCTGCCCAGCAGTGCCAACATGTCTGCTAGCATTATGAGAATCAAAGACATGATTGAGAGGACCAGAGAACTGGCCAACACAATTAGGGGACCCATCTTATTATCTGGTGAAAGCCACATAGAGCTGCGTCCTCCTAAAAACCTGGTTGATCTACAAGCCTTCACTGCCATGGACCTGATGCTCCGTCGGCCCAAAAAAGATGGGGAAGGCAGGCGCAGCCGACGCCAGAGTGGAGAGGAAGAAAATCTATTCGTCCTTTACTTAGGAAACAAGAATATGAAGAGAGACTTTATTGGAATGGTGGTCATGGATGGTGTCCTGTATTGTGTGTACAAACTGGGGGACATGACCTACAaaataaagactgaaaaaattACCCGGTCCAGCATTGACAGCTCCTTTATGGACAGAGTGGACTTCCGTAGAATTTACCAAGATGCAGAAGTCATCTATACCCAGCATTACAGCTCAAGTGTTCCCAAGAAGCTGTCAAAAATCACAAATCAACCAAATACAACTGTAAACTTGCTGGATCTGGGCAGTGATGAGGTTGTTTTCTATGTGGGAGGCTATCCAGATGACTTCACTCCACCACTGGAGCTCCAGTATCCCAAATTTAAGGGATGCATTGAGTTTATCACATTAAATGCACACATCCTCAGCCTATACAACTTCCAGCATGCTgtcaacattaaaaatacagaCCAATGTCTAAGAGGCGAGACCCGAGAGGTGACAAAATACTTTGATGGTACAGGTTATGGCAAGATCAGTGTGATCAGCAGTAGATCCGTCAGGTTCTTTGTTCTAAGTCGACAAGAGAATGCCTTGCTGCTTTTTATGGGGAATGAGgACTCTCACTTCACTATTACTATTGAAAGAGGCTATGTTGTTTTGCGGCACACAGAGAATGGCCAAAAGCAAATTAAGAGGAGTGACAAAAAAGTTTTTCCTGTGgCCTATTTTCGGAACATTAAAATCCTCCATTCACTCGACAAAACTGAGATAATCGTTGTAGACTATTCGGTCAATATTGTGATCAACTACAACATCTATAATCAAGCATTTATAGGAGGAATCCCAGCAGCGCTCACAGAGAGACTAAATATTAACCACCCGGCGCTTAGAGGATGTCTTAAAGGGCTTGAGGTGGATGTTGCCATCAAATTCTCAGAGGCAATTGGAATTCATGCTGGTTGTCCGCAGGCTTTACTGGGTGTACATGAAGTTACTCTGGAGACAGGAAGCTCTCTTGCTCTTACTGCTAACAGTACATTGCCAAATTCAGCCACAATGGTTTCCCTGGGCTTCAGATCCACACAGAGCACTGGTGTCTTACTGCACACCAGGGACGCGGACAGTGGATTTGAACTGTCTCTCGTTGATGGACATGTCGAGATGAAAGACAGTACAACCAATTTAAAGTCCAAAAACAGATACGATGAGGGAAGGTGGCACTATGTGACGGCTTATAGAAACAGCACAGGaatggaGCTAAATGTTGACAATTTTGACAGAGGAGATGTGCAGACAATGTCCACAGGCTCTATAGTCCAAAACACTGATGTGATTTTAGGAAAAGAGACATTCAAAGGCTGCATGAGGAACTTTTACATGAGGAGAATTGAAAACAGATGCATCCCAATTGATCTGAGCAATTTCACTCAGACGGGAAACGTGTCTTTTGGGTCGTGTAACACTCAGCAGCAGCCTCTGTCCATCATGGCAAGAAGCAGTTTAAGACGAAAAGGGCATGTTAAGTCCAACATCAGAAAGAAAGACTGTAGTCAGCCAGTGGGTCACATCCTGGCCTACCATCTCAGCGCACGCAGTCAGCTGCAGTACATCCTATCTCCAGAAGACCTTAATTACAGGCCTCATATTTTCCTGGACATTCGGACAAGGTCAGCTGATGGCCTCCTGCTCCACATCACAGATAAGCAAGGCTTTGCTCGTGTCATCCTGTTCATGAGCGGCGGCAGAGTCAAACTCTTTGTCGGTGATGGAACACTGATCTACTATCAGAAGAAGATTAATAATGGCGCCTGGCACAATATCAGGTTCAGTGTTGAGCAGCACGTCACACACCTGGTGGTGGATGGGTTTCGGGTGCCGGATGGACAGCTGCAGAAGGATGAAGGGATCTCGATGGAGCTTCAGCCTCCTGTTTATTTTGGAGCTGGAAAGATTCAACCAATCACTGACACTCAGGGCATACGTTTCCCTCAGAAGAGCGTGATAGGATGCATCCGCAACGTCAGGTTTAACAATGTTCTTATTGGAGAGCCAGCTGTCAATCATGGAGGAGCTCCCTGTTTTGATGGGGTAGTTGAGGAAGGGGCGTACTTCGCTGGTGGTGGCTCTCACATCATTTTAGAGAAACACTTTAGGTTGGGTGCTGAGTTCAATTTAACTTTTGAAGTTCGTCCCAGAAACATGACCGGTTTACTTTTCCACTGCAGAGGTCATCAAGATCACAGCCTCAGCGTTTTCCTGAAGAAAGGCACAATGGTGGTCCAGATGAACGATGGTGCGGGAGACTACAGCACCTCTCTGACTCCTCCACTGCCGCTCTGTGCAGAATCCTTCCATCGTGTGACAGtgaccaaaaaaggaaatgttatcCAGCTAAAGATGGGACACAAGTCCACCAGTGCTGTTGGGCCTCATGTGCATTCCCCTTCCAAGACTCGTCACACACTTTACATCGGAGGCGTACCAGAGACCAAGCGGAAGAGAGTGCCGGTGTGGAGCTCCTACCTGGGATGTCTGAGAAACGTGCAAATAAACCAGGCTGCTCTTTCATTTAAGTCTGTTAGCAGTGTGTTCGGTTCTGTCAACGTTAATGAGTGTCCGGCAGAGTAGTATAAAGCCTGTTTATCCTATccaatttattataattatttgattatattcaaAGTCCAATTCAATTGCTTATGAgtaaccagactcaaaaggtaGTACTAAGTGGATTGAAAATATGTGAAAGTGTGAGTATATTGTGAATAATAATCCTGgtatgagcacaggacagtctttatgattacagcagcagcagttcttaggcacaaatctacagtatccttGGATATGGACATAAACTGATGTGGGGAAATCTTTAAGCTATCCATGTTTTTTGGTGTAATAAGTGCTCATCAGTTCCTGCCAGTGCTCAACTTGATGAAAAGATGTTTTCAACTGGTCtgtaattagttttatttttaaaagaaaaagtatgaataaataaaaaagtattctGATGTtctgtgaaataaattattCTCGCTGAGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214704 lncRNA downstream 52130 14497201 ~ 14498776 (-) False tnfaip8l1
TU214706 lncRNA downstream 59418 14487389 ~ 14491488 (-) False LOC113532209
TU214699 lncRNA downstream 67722 14481529 ~ 14483184 (-) True G181401
TU214672 lncRNA downstream 112872 14437401 ~ 14438034 (-) False zfr2
TU214767 lncRNA upstream 46688 14626435 ~ 14627355 (-) True G181453
TU214776 lncRNA upstream 56485 14636232 ~ 14636441 (-) True G181462
TU214777 lncRNA upstream 57975 14637722 ~ 14638851 (-) True G181463
TU214782 lncRNA upstream 60849 14640596 ~ 14640859 (-) True G181465
TU214784 lncRNA upstream 62145 14641892 ~ 14642476 (-) True G181467
XM_026941582.2 mRNA downstream 2298 14527131 ~ 14548608 (-) True ttc39c
XM_026926916.2 mRNA downstream 29246 14517370 ~ 14521660 (-) False LOC113534236
XM_026926915.2 mRNA downstream 29246 14517370 ~ 14521660 (-) False LOC113534236
XM_026926909.2 mRNA downstream 29246 14517370 ~ 14521660 (-) False LOC113534236
XM_026926902.2 mRNA downstream 29246 14517370 ~ 14521660 (-) True LOC113534236
XM_026927907.2 mRNA upstream 1797 14581544 ~ 14587731 (-) True cts12
XM_026930377.2 mRNA upstream 34893 14614640 ~ 14619685 (-) False plekhb2
XM_026930367.2 mRNA upstream 34893 14614640 ~ 14619685 (-) True plekhb2
XM_026918461.2 mRNA upstream 73956 14653703 ~ 14666953 (-) True stx6
XM_034308855.1 mRNA upstream 131849 14711596 ~ 14838457 (-) False patj
XR_003402957.2 other downstream 90569 14439854 ~ 14460337 (-) False zfr2
XR_004579086.1 other downstream 135837 14408726 ~ 14415069 (-) False rx1
TU214564 other downstream 189259 14360936 ~ 14361647 (-) False LOC113527598
TU214009 other downstream 1307744 13239749 ~ 13243162 (-) False rpp21
trnam-cau_27 other downstream 1314431 13236403 ~ 13236475 (-) True trnam-cau_27
TU215666 other upstream 1111027 15690774 ~ 15692350 (-) True G182210
TU216001 other upstream 1695135 16274882 ~ 16278809 (-) True micos13
TU216002 other upstream 1695921 16275668 ~ 16278809 (-) False micos13
TU216000 other upstream 1696119 16275866 ~ 16278809 (-) False micos13
TU216003 other upstream 1696119 16275866 ~ 16278857 (-) False micos13

Expression Profile