RNA id: XM_026927907.2


Basic Information

Item Value
RNA id XM_026927907.2
length 1147
RNA type mRNA
GC content 0.48
exon number 8
gene id cts12
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14581544 ~ 14587731 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGACCTCTGCATGGGTTATATCCTCTAGTTCTCATCAGAAACTCATCCACTGGACAGtactcacaaaaacatgccagATATGGGTCGAGTCCCTTGGATGGTTCTGGTTAGCAGGACACTCCTGGTCAGCGTCTTCGTGGCTGTACCGCTCTCAATGGCTGTGGAGTCAGAAGAGGACGCACCATCAGAGTGGAAGCTGTGGAAGAGAGCTAATGGAGTGGACTATGAAGAAGAGAACAATGATATTAAAAGAAGAGCCATTTGGGAGAAAAACAAGGAGCTGATTGAGGATAACAATAGAAAATTTTATATGGGCGTGTCAGAGTTTACTATGGCAATGAACAAATACGGAGACCTGACTCGGTTGGAGTATCATCAGTTACTGGGAGCCAAGGTAAATGGAAATGCACATAAGAAGGGAAAGACTGCTAATGCACGCAAGCTACGCTACCATGCTCGGAGACTACGGCTGACCTCGGTAGACTACAGACAGATGGGATACGTTACAGAGGTTAAAGACCAGGGCTACTGTGGGTCGTGTTGGGCTTTCAGCACTACTGGTGCCATTGAGGGACAAATGTTCAGGAAAACAGGCCAGCTGGTGTCTCTTAGTGAGCAGAATCTGGTGGACTGCTCATGGTCCTACGGCACATACGGCTGCAGTGGGGCCTGGATGGCCAACGCTTATGATTATGTGATTAACAACGGGCTGCAAGCCTCTGAAACATACCCTTATACTTCAGTGGACACACAGCCCTGCTTCTATGATAGCAACAAAGTTGTGGCACAAATCAATGACTACAGGTTCATTCCTACTGGAGATGAACAGGCTTTGGCTGACGCTTTGGCAACTATCGGTCCGATCACTGTAGCGGTTGATGCTGACCACCCAAGCTTTCTGTTCTACAGCTCAGGAATCTATGAGGAGCCGAGATGTAATCCGAACAACCTGAGCCATGCAGTGCTTCTGGTCGGCTACGGCTCAGAGGGCGGCAGAGACTACTGGATCATCAAAAACAGCTGGGGCACAGGTTGGGGAGAAGGAGGATATATGCGCATGATCCGAAACGGCAGCAACACCTGTGGCATCGCTAGCTATGCTCTCTACCCCATTGTATAAGATCTTTTTGTATCTCTCAATTAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214704 lncRNA downstream 82768 14497201 ~ 14498776 (-) False tnfaip8l1
TU214706 lncRNA downstream 90056 14487389 ~ 14491488 (-) False LOC113532209
TU214699 lncRNA downstream 98360 14481529 ~ 14483184 (-) True G181401
TU214672 lncRNA downstream 143510 14437401 ~ 14438034 (-) False zfr2
TU214767 lncRNA upstream 38704 14626435 ~ 14627355 (-) True G181453
TU214776 lncRNA upstream 48501 14636232 ~ 14636441 (-) True G181462
TU214777 lncRNA upstream 49991 14637722 ~ 14638851 (-) True G181463
TU214782 lncRNA upstream 52865 14640596 ~ 14640859 (-) True G181465
TU214784 lncRNA upstream 54161 14641892 ~ 14642476 (-) True G181467
XM_026936397.2 mRNA downstream 1797 14550906 ~ 14579747 (-) False lama3
XM_026936319.2 mRNA downstream 1797 14550906 ~ 14579747 (-) True lama3
XM_026941582.2 mRNA downstream 32936 14527131 ~ 14548608 (-) True ttc39c
XM_026926916.2 mRNA downstream 59884 14517370 ~ 14521660 (-) False LOC113534236
XM_026930377.2 mRNA upstream 26909 14614640 ~ 14619685 (-) False plekhb2
XM_026930367.2 mRNA upstream 26909 14614640 ~ 14619685 (-) True plekhb2
XM_026918461.2 mRNA upstream 65972 14653703 ~ 14666953 (-) True stx6
XM_034308855.1 mRNA upstream 123865 14711596 ~ 14838457 (-) False patj
XM_034308856.1 mRNA upstream 123865 14711596 ~ 14838457 (-) False patj
XR_004579061.1 other downstream 1797 14553155 ~ 14579747 (-) False lama3
XR_003402957.2 other downstream 121207 14439854 ~ 14460337 (-) False zfr2
XR_004579086.1 other downstream 166475 14408726 ~ 14415069 (-) False rx1
TU214564 other downstream 219897 14360936 ~ 14361647 (-) False LOC113527598
TU214009 other downstream 1338382 13239749 ~ 13243162 (-) False rpp21
TU215666 other upstream 1103043 15690774 ~ 15692350 (-) True G182210
TU216001 other upstream 1687151 16274882 ~ 16278809 (-) True micos13
TU216002 other upstream 1687937 16275668 ~ 16278809 (-) False micos13
TU216000 other upstream 1688135 16275866 ~ 16278809 (-) False micos13
TU216003 other upstream 1688135 16275866 ~ 16278857 (-) False micos13

Expression Profile