RNA id: XM_034308856.1


Basic Information

Item Value
RNA id XM_034308856.1
length 9428
RNA type mRNA
GC content 0.47
exon number 48
gene id patj
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14711596 ~ 14838457 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttaaagaGACAAACTAAAGACTTTTCTCCGaagatgttttattaatgtaaagTTGTAGCTATTTTTGAGCGTGCTGCTGTCTACTTTCGTCCACGTTGTGAACTAAATGGAGTTAGCCATGTGGTTGGATAAACTTTGGCGTAAACGTTTCTCCTGTGAAACTtgttaaatgatttgttttgcTATGAGCTCGTGAGCAAACTTTAACACTACTTTGCACTGATGTTTAtcaaagctagctagctgaggCGGCTAaacggttttttttttcttggaacaGCTGTTATGTTTCAGTTTTGATGTGAGAAAGATACATACGGTAGAGCGGAAAGCGGCCAAATCTCAGCTGAAACTTCCAGCTTCCACAAGCCCAAACGCTTTACAGGGCGGCTGTCATTATTCACCTGAATTTACACGTTATTCTGAATTGTAGACTGAACCGGTTAAACAAAATCTGTATTACCCTGACTGAATCCTCAGCATCAGGCTTGTCAGGAAAGAGTGATGTATGAAAATGTGCCGACAGtgtcgGCGACTGAGCGGCAGCAGGTGCTCCAGGCCGTGGAGAGGCTGCAGTCCAAGCTGGCTCAGCGTGAGGAATGGACTCACAGCGAAAGGCTTGGAGCACTAAAGGAAGCACTACAGAGCCCTCTGCTTGGCCGCATCCTCACCCTGCAGCACTCTCTCAAACAGCTTAAAGACCAGCTGAACTGTCTACCTCCAGATGCATGCAGTGAGTTCAGTTTCTCCAAGAAAGGCCAGTTAATTGTGAGTGCTAGTCGTCCTGGAAGCAGTCTGGGCTCTGTAGTGTCCAATGGCACATCTGTGTCTTCAGCATCCTCTGAACAGCTCCAGAGATGGCTCCATGCTACAGCAAAGGGAAGAAAGCTGGAGCATGTGAGCTTGCTGAGGCCATTGACAGGAGGTCTAGGCTTCAGTGTGGTGGGGCTGAGGCCGGATGGAGTTGGCCCTCATGGAGTTTTCATCAAACAGGTGCAGCTGGGGAGTGTGGCAGACAGAGATGGCAGATTGcaggagaatgaccagattCTGGCCATCAACGGGATTCCCCTGGACCAGAATGTTACCCAACAGCAGGCTATTGCTTATCTGCAGCAGCAGAGGGACCGAGTGGAGCTAGTAGTGGCCAAAGACTCTTTGCTAAAACCACACCTACCCTCATCTGGATCCATTCAGACAGAACAATGGGGGCATGTAGAGGAGATTGAGCTAATGAATGATGGTTCAGGTCTCGGCTTTGGAATCGTGGGTGGAAAGGCTGCTGGAGTGGTCGTACGCACTCTGGTACCAAACAGTGTTGCAGATAAGGATGGGCGGCTGAGGACTGGTGACCACATCCTGCGGATTGGGGACACGCCTACGCAGGGTCTGACCAGTGAGCAGGTTGTGCAGGTCCTGCAGGCCTGTGGTATCAGAGTCCGCATGCTAATCGCCCGTGACCCTTTGGGCAATGCACAGCCTCCCCCGCCACCACCACATGCTCCTACAACAGCACCCATTGCCTCCATGCACCCACCCATACCAGCACGCAGAACCAGCAAAACGCTAAACCTTGAGGGCCATGAGATTCATGAAGTGTCGCTGAAGAAGAAAGACGGTCAGAGTCTGGGAATTTCTATTGTTGGCTGCAATTCTTCAACCAGCGatgACGGATTAGGGGTTTCTGTGAAGAGCATCATCCCTGGCAGTGCTGCCGAACAGTGCGGGAATATCATGGTCCATGACAGAATAATAGCGCTGAATGGAGTTAACCTGCAGGGCTTCACCAGCCAGGAGGTCCTGGATGTGATGAGGCAGTCGAGTCAGACTGTGAACCTCACTCTGGTCCGCAAAATCGCCTCGCCCAAGAAATCTGCTGTGGAGATATCTCTGGATAAAGtccaAAGAGAGTCGTCCCGAGTGTCTCTGAAGAGATCTGCAGAGATCAAGGTGCGGGCAGATGTTCAGATGGCCTCTGTGATGGAGCCAGCGGACACGAGTCAGACTGCGATCAAACAGCAGTCGTCTGCAAGAGtTCGAGAGCCCATTCTACTGACAGAGATGGAGTTGCGCACCAAATGGGAGCAGGCACTCGGCCCTCAGTATGATGTTATGGTTGTTGAACTAGACCCTGTCATTGAGGATGATGCTGAGCTGCAGAAATATTCCAAGTTGCTCCCGATACACACCATGCGTCTGGGTGTGGAGCTGGATTCGTTCGATGGTCACCACTACATCTCTACTGTGGCCCCTGATGGTCCTGTGGCCAAGCATGGTTTACTGCGACCAGAGGATGAACTTCTTGAGGTGAATGGAGTGCAGTTGTATGGGAAGACGAGGCGGGAGGCTGTAGCATTCCTGCGAGAGGTTCCTCCTCCCTTCACTCTTGTGTGCTGTAGACGCCTCACTGAAGAGGGCACTGAATACCAACCTGAGGATGAATGGGGCTCCAGCAGCCCTACAGCTAGCCTACAGGAGCAGACACAAGTGATCCAGAAGGAGGTTGCTGAGCAGAGAACAGCTCCAGAGCAGAGTTTTGCTCAgagggaggaggatgaggaaaggGAGAGTGGAGATGAAGAGAATGAAGAGGGAGAGCTGGCTCTCTGGTCTCCAGAAGTGCATGTGCTGGAGTTAGAGAAAGGCGAGCGAGGCCTCGGTTTCAGCATTCTGGATTACCAGGACCCTCTGGACATTACGCGCTCTGTGATAGTCATTCGGTCATTGGTAGCCGGAGGTGTTGCAGAGAATAATGGCGACCTGCTACCTGGTGATCAGCTGGTCTTTGTTAATGACACCTACCTGGACACATGCTCTCTGTCCCAGGCTGTAGATGTCCTCAAGGCTGTGCCACCAGGCACGGTATACCTGGGCATCAGGAAACCTCTGGGGGCAGAGGACAGGAGCACTGTGGAGAAGCCTACAGATCTCAAGGAGCAAGAACACACCCCCACTCATCCTCAGCTACCTGCGTCTAAGAGCTTTGGGGATGACTCTGAACTTCCAGAAGACATTGATGATGAGCCAGAGCTGATTCTGGAAAGTACCATCCGTTATGCCAAACCTCTAATCACTCCGGAGCTCCTGCCAggcgaagagagagagatggctgtggatgaggaggaagatgaagaggaggaaagaAACAGTGTGAGAAGTGACAGGGAGAGTCCACTGTTGTTCCACAGGGAGCAGTCACCTTTCAGGGAAGAGGAAGTTATGTCAAACCCCTACCAGACCTTTACCCAAGCTGAAATACAGCAGCAGGTGGAGGAGGACAATGCAGCTGAAGAGGACTTCAGAACAGAACTGGAGTCAAGCATAAATCTCCATCAGCATCctctcaGCCATTCAGCAAGGACATGGCAGGAGTTGGCAGAGTCCGAGGTGGACTCAGACTCCAGGAATGAAGGCTCAGAACTCACTCTGactgacacagacacagaGTCTGCACAGCTGTTTTCATATCCCAGACAAAAGAAGAGAAGTCAGGGGGCTGCAATGGGGCTGATGAGAGACGAACACAGTGATTTGCCAGAGAGGgaggatggagagggagaggaaacgCCCATCTTCAGTCACTGGGGTCCCCCACGCagAGTGGAGGTTTGGCTGGATCCTGGCGAGTCTCTGGGCATCAGTATCGTTGGCGGTCGTTCGGTTATAAAGCGCCTGAAGAATGGAGAAGAGCTGAAAGGCATCTTCATTAAACAGGTGCTTCCAGACAGCCCTGCAGGACGCACACATGCACTTAAAACTGGAGACAAGATCTTACAgGTAGCAGGTGTGGACCTGCAAAACGCCAGCCATGAGGAGGCAGTGCAGGCCATTAAAAATGCTCCGAGCCCTGTGGAGTTCATCGTGCAGAGCCTTTCTTCCACCCCCCGGcctgtTTCAGTCACAGCCTCGAGTATAAGACAGCACAAGGCCAAGAGGAAAGGCATGATGAAACCAGAACAGCGGAGTGCGCCGCCCCCCATGCGTCTCCCTCCACCATACAGACCTCCCAGCCTTGTGCAGGAAGAGGAGGATCCTGAGGAGGACAgagAGGATATCAGGCAGAAGTATGGCGAGCTACAAGGGGAGCTGCTGCTGGTGGAACTGGAGAAGGATCGACAGGGTTTGGGTCTGAGCCTGGCTGGAAACAGAGACCGCTCCTGCATGAGCATCTTCGTGGTGGGGATCAACCCTGAAGGACCAGCCAGCCGTGATGGACGCATCCGAGTGGGCGATGAGTTACTGGAGATCAATAACCAGGTGCTTTATGGGCGGAGCCACCAAAATGCATCAGCCATAATAAAGAGCGCTGCATCCAAGGTGAAGCTGGTGCTGCTCAGGAATGAAGATGCTATCAATCAAATGGCAGTTCCACCTTTCCCCTACCAgccttcctttctctcctcaAATGAGATTCATCCGAGCCTTCCAGAAGCTGTAATACCTGCAGAGAAGCCGCAACCCCTGGAGTGTCTCCCAGAGCCCCTGCTGAGCCAGATCCCAGAGCAGTCGAGTGAGGCCACTCCAGAGAGCTCACTGTCTGCAGAGGTGGTGGACAAGAGCCTACAGGACCGCGAGGCTGCCTCTAAGAAGCTAAAGTCTTCAGAAAGAACATTAGAGACTGTGGGTGAGGATGTTTCCGGACCATTggaaaagTCTGCTAGCCTTGCCAAAAGCCTGAGAAGCCCCAGCAAGCTTCCATCAACTTCTGTGGATGTGGCAGCACTCTTACCTCCAGTGCCTCCTTCATGCACCAGCCCTGAGTTTGAGTGCTGCAGCAAAGACCCTGCTACATGTCCTATAGTGCCAGGGCAGGAGACTGTGATAGAGATCTCTAAGGGCCGTTCTGGACTCGGCCTCAGTATTGTCGGGGGCAAAGACACACAGCTGgATGCTATAGTGATCCATGAGGTATATGAGGAGGGAGCAGCAGCACGGGATGGACGTCTGTGGGCTGGAGACCAGATACTGGAGGTGAATGGTGTGGACCTGCGCAGTGTAGCTCACGAGGACGCTATCGCAGCTTTGAGACAGACTCCTGCTAAGGTGCGTCTGACGGTTCTGCGGGATGAAGCGCAGTACCGTGATGAGGAGAACCTGGACGTGTTCTCTGTGGAACTGCAGAAGAAGAGTGGCCGTGGTCTTGGCCTCAGCATCGTGGGCAAGAGGAATGGCACAGGTGTCTTCATCTCTGACGTGGTTAAAGGTGGTGCAGCTGATGTGGACGGCAGGCTCATGCAGGGAGACCAGATCCTGTCTGTGGACGGAGAGGACATGAGACGAGCTTCTCAGGAGACAGTTGCTGCTGTCCTTAAGTGTGCCAGGGGAATGGTGCAGCTAGAGTTGGGCCGGCTGAAGGCTGCCTCTTGGATCTCCTCCAGACGCACCTCCCAGGGAAGCCAGAGTCATGCATGTAATATGACCAATAGCAACCCTGTGGCCCCCATGGCTCCTCCCACTGCCCCACAACCCAGCCAGTTACCCAGCAGCACTAAGAGAACTGGAAACGAGGCCAACACCAAGAGCTCTGTAGTTGAAACAGGCCTACGCACAGTGGAAATCACTCGTGGCCCAACTGATGCGTTGGGGATCAGTATAGCTGGAGGAAAGGGCAGTCCACTGGGAGACATCCCCATCTTCATCGCAATGATCCAGGCTAACGGTGTAGCAGCCAGAACCCACCGCCTCAAGgtTGGTGACCGTATTGTGAGCATTAACTCTCATTCTCTGGAGGGTCTGACTCACGGAGAGGTGGTCAACATGCTGAAAAACGCCTACGGCAACATTTCTTTACAGGTGATAGCAGACACTAACATCAGTGCCATCGCCAGTCAGGTGGAGAGCATGTCCTCAAGCTCCGCCCTGAGCACCAACACTGAGACCCCAATTACAGAGCCAGAAACACCCAAGCCAAAGAGCATCACTCTGGAGAAAGGCTCTGAAGGGCTCGGCTTTAGCATCGTGGGTGGCTTCGGGAGCCCACACGGAGACCTGCCCATCTACGTCAAAACTGTCTTCAGCAAGggggcaGCAGCGGTGGACGGGCGCCTAAAGCGTGGAGATCAGATCCTCTCTGTGAATGGAGAGAGTCTGGAGGGAGCCACGCATGAGCAGGCCGTGGCCATCCTGAAGAAACAGAGAGGGCTCGTCACACTGTCTGTACTCTCTTAACACAAACGCACACTCACATGGACTGCCACGAACTACAcagacatatatacacagacacacacacacctgttgcaTTCCTATCAGGATCCAAGGAGAGGACTCTGAAaccttgtacacacacacctagaagAGGGAGCATGCATAGCACCTGATTAAAATCTCCTTCAAGTTTGTAGAGCTCAGTAACAGAAACTCCAGCAGAGATCTGTGTGAGAATGAAATTGAACTTAACccctttaatgtgtgtgtgcatttttgatCTACCACTAAACAAGAAGGGAAATTGCTCATGACCGATGTCTTAAATCGTTTTGTTTCATTAAGTTAATGAGCAGACATCAGGGCATGGATGACTCTTGTGTCAGCAGCAAcaagtttattcatttatcacaTGCTCACAATCAACACACTAATCAATCCAAGCCTGTAGCTGAGCAGTTCAGGGTTATGACTCTGTGGCAGATCAACCTTCTGAGCAGCCttctactgcatctgtagtgtatcTATGCTTACAGTGGACAAaaaattttgacacatttccctgtactgagataagaacaaaaaagaaataaggtctaacagtaacagtgttagaCTTCTGTTAGTGTTAACAGATGTGAGAGAATGTTACCAAAGATGTTATGAAGTTTCCAAATTTCCAACCCTGGAGCAATACAGTAAGTCATTCAGAATACTTGGTTTATTCCCTAAAGGTACCCAAAaaccatcacaccacaccaaatctgtcctctgaaaaagtagccCAGTATCTTAAAGTGCAAGTTATACAAATTGAGAGCTTAgttgtttacatttatacatatgtGAAGCACAAAGGTCATTAACTATTAAAATCATGTGActattaaaaacaacagcaaagggggtaAAGAaggaaacaacaaaataataaggGCTGACCATAGTAacaataatctttttttatatataaaattgaaagaaaaaacagcttCCACTGTACAAGGTGTTTTTAACCTGTAGATTTTCTCTCACTCATAGCATTGACCCAGTATGTAGAtttctcttaaaactttcaGTTTCTTGTTATTGCTTTATTGAAATTCAGAGCttaatatatattcatttccAAGAAATGCATGTTTTGTGTAATTGTCCCAAAAACATCCATTATAAGTGAATTGAGAGTGAACaggtttttatgttttctcAGTGCAGGGAAACACGTCGAAATTCTTGTCAATGATAATGACGTGCAACccaaagcataaaaaaaaaatttgttattttttcacaAAGCTACCACTGGCTTTTTTGATTTACCTAGAAACACTAATTCAGTACACCTGAACACAGATCTGTCAttgcaataaaaacataaatactgaACACATTCCCAGTCGTCATTTAGGGATATGAATGGCAGCAGCCACGCTGTGATTCCTCTGTGAATCACTCGAGTGATtaacacatgcagacacacagttTCACCAGCTGACTGactgtacattttaattcacTTTGCTTGCTAATAAGAATCAGTCGTCACTGTTGAATGttcacacgcgcgcacacacacacacactgtcatagAAAACTATAGGGATGAACTGTGATAAGGGATTAGTGCTGAAACGTTATGTTTTCGCTGGCCTTAATTAGATCATGCTGAGTATTCTGTtaatttttgtttctgttgtatATGTGCTCTTCATTATTATTGTCTCACCAACACTAGAAGCAGCATGATCTATTGTAGTGAAATGGAGTAATTTAGAGCGCTGCGTTCCTGTTTCTGACTGAATAATCATGTCTGACTGTAGTTGTCAGATTCACAAAGAATTTTtggggccttttttttttttttttttttttttttaaatactaaagCTGTCATCAGTGTTTCATCATTTAATTGCACAAATCTAGTCAgtgtaaatatgtaatttatttcattaattcaatttgattttgtAGGACTTTTGAACTAGCATTCCTATCAATGTTGAAATGAAGATGATATGTGAAATGTATCATTTTACACTGTGTGTACCACAATATGAGGAAATCCTGTGTCAGCTGGACTCCTGATCTTCAAACGGAAGTGTGCCAAATTCTTGCAAGACACTTGTATGACCTCAGGGTCGTAGAAAATGCATGAGGAGGCTTTCGCCAAAATGTCCATGCTGAGGTAAACCACTTTCTGCATTAGGGCTGTGCTTGACATATTTCAGATTCAGCTTTATACTGAGCTGAATCAGGAGCATGAAAACACTAAATTGGGCTTTCCCAATTTAAGCTCATTTAACTCACTCTAGAGGTTTTAAAATCAGGAGTGTCTGACTCAGAGAGCCCTGCAGAGATTTCTAGCTATGTCTCAAATGGTATACTTCACTTACTTTTTGTGTGTAGTGTCTTCACACCAGGAAACGCAGCAAGCTGTAATGTACTATTAATACCCTGATGGTGTACTTATAAAGCCTAAAAATGAAGCATGGAAcaatgaaaactttttgaacTATATGAAGTCATTGTGGACTGCATTATGTTTAAAAAGGGCTGGAGCCATCAGATCGCCACCGGTTAATAAATGCTGCTAAATAGCCAGTGCAGCAGGTGAGAACAGTTCTACGCCCTAGATAAATATTGGATGGTTgtaggttttttcttttcttttttttttatgttaatgttaaaaatgctTAACTCCCGGGGGCTGTATACTCTAGTACATATATTGTGcaagtgtattagtgtataatgTTAGAAAATAGTGCCTAGTACGCCATTTGAGGCTGTGATAAATAGCTGGTGACTTGAATCACATGTGTTAAATGAAGTAGAATGCTAATCTCTGTAATGCTCTGACTCTGACACTCCCTCTCTAAATGGTCCTAACCTTTCAGCTTAATGGTCCTTCTGGGAAAAGTTTACAGCACTGTGGTTCCACTGGTAGAGGGTTTTCCCAGTGCAGACATGTTCCTCTCATCAGGTGCATCCATTGGAATGAAGAGCGCTGTGTCGTAACTTGACTTCTATGTGTTTTCTCCATACTGTCCGCCATGAATTCCCTTTAAAacatatgtttgtatgtatgtctgtctcttttcCCCCGTTCCCTCCCCctacaaatacagaaataccGAATGTTAATTCAACTGGAAATGTTTAGTTTATTGGTCAGTCTTTGTGAAATGATCATGTAATCCCAAAGAAACCATGTCAAGATTCATTATGTTAGATAATGAGAGATGATCTAATAAACCTGATATCTACATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214976 lncRNA downstream 38867 14670909 ~ 14672729 (-) True G181638
TU214786 lncRNA downstream 61937 14647302 ~ 14649659 (-) True G181469
TU214789 lncRNA downstream 66225 14643368 ~ 14645371 (-) True G181470
TU214785 lncRNA downstream 68667 14642558 ~ 14642929 (-) True G181468
TU214784 lncRNA downstream 69120 14641892 ~ 14642476 (-) True G181467
TU215063 lncRNA upstream 66394 14904851 ~ 14907232 (-) True G181703
TU215073 lncRNA upstream 100580 14939037 ~ 14944216 (-) True G181713
TU215082 lncRNA upstream 139214 14977671 ~ 14982559 (-) True G181721
XR_004579123.1 lncRNA upstream 221674 15060131 ~ 15064037 (-) True LOC117598447
TU215154 lncRNA upstream 282998 15121455 ~ 15121666 (-) True G181779
XM_026918461.2 mRNA downstream 44643 14653703 ~ 14666953 (-) True stx6
XM_026930377.2 mRNA downstream 91911 14614640 ~ 14619685 (-) False plekhb2
XM_026930367.2 mRNA downstream 91911 14614640 ~ 14619685 (-) True plekhb2
XM_026927907.2 mRNA downstream 123865 14581544 ~ 14587731 (-) True cts12
XM_026936319.2 mRNA downstream 131849 14550906 ~ 14579747 (-) True lama3
XM_026925943.2 mRNA upstream 29466 14867923 ~ 15022648 (-) True nfia
XM_034309005.1 mRNA upstream 288801 15127258 ~ 15132792 (-) True nphs2
XM_026912928.2 mRNA upstream 288801 15127258 ~ 15130925 (-) False nphs2
XM_026928641.2 mRNA upstream 449628 15288085 ~ 15298641 (-) True LOC113535381
XM_026928627.2 mRNA upstream 462591 15301048 ~ 15308956 (-) False hnrnpm
XR_004579061.1 other downstream 131849 14553155 ~ 14579747 (-) False lama3
XR_003402957.2 other downstream 251259 14439854 ~ 14460337 (-) False zfr2
XR_004579086.1 other downstream 296527 14408726 ~ 14415069 (-) False rx1
TU214564 other downstream 349949 14360936 ~ 14361647 (-) False LOC113527598
TU214009 other downstream 1468434 13239749 ~ 13243162 (-) False rpp21
TU215666 other upstream 852317 15690774 ~ 15692350 (-) True G182210
TU216001 other upstream 1436425 16274882 ~ 16278809 (-) True micos13
TU216002 other upstream 1437211 16275668 ~ 16278809 (-) False micos13
TU216000 other upstream 1437409 16275866 ~ 16278809 (-) False micos13
TU216003 other upstream 1437409 16275866 ~ 16278857 (-) False micos13

Expression Profile