G181469


Basic Information

Item Value
gene id G181469
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14647302 ~ 14649659 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU214786
acagtaaatataaatacacaaaagaaaacacagtgaAAGTCAGCCATTAATTCATGGTGCGTGTGTCATAATACTGCTGCAACTATACAGAAAGAAGCATCTAAATAATTTACTATGCAGTCTGGAGTTAGTATTGCAGCCCTGTTTCAGCTACCTGTTTTCATATTGCATTCAGAACATTTGTGCTCTGGTTCTGAAGTTAAAGAAAGTGATATAATACTTTTTTGGTatttcattttgcattgtgtatGCATTTTGAGTACTGTGTATGTTAGCAACATGAAAAATGAGAAACTCTGCAAATGTGCACTCATAAGTTGTTCTAAGGGAACAATGGGAACCTTTGTATTTTGGTACAGGACTTGTGTACCTAGTGTGTATTTATGGCCCGGGCTGCATGACGACTAATATTTACTAGTCTGCCAGTAATTATAAAAGTAGTAGACTTTTCCATATTTAAAGCAAAAACCTTTCTAggatataagtaaataaatctaCAGCAGTGTCTGGGAGGCTTCTCTGCCATGTTAAACTCTGGCCTCTAAAAGTGAGTCTGGATCGGTCTCTTTGAACTGGCATGTGCTGCTGATCTGATTCTAAATGTGCTAAGTGAgattggatagtgatgtgcaacccgcgGCTTCAAAAGCACTTTTTCACACAGCATTGGTCACAGGAATTCACTCTTCTGAagtgcaaggattttatttaaatgttatttagctTTAAACTACAACAAAAATAGCTGTGGGAGGATTTCCTTCGGGAACAGGCGGACTGGGAAAACAGTCAAGCGCACACACCTCCACTTCATGCAAACTGAAATCGAAGTGTGTATGGCcctttaaagcaaaagaaaattaaaaaaaaaagacttcccAGAGTAGTCTTGTGCAGTTGACTGAATTGGCTTCACTGactctgaaatattttcagactacaTTTAACTGCTTTCATTACTGTCTACCTCACTGTTTTTGTCCAACATCGCCCAAAGTAGTTTTTTCTACCACCTACAGCAGAGAATGTTTGATCAAAGTGAATGTATTAGATGACTAGTCTATGCAACCCCTAATTTATGGTGAGTTCATTCTGGCCTTCACTGTTTTACCAATTCCTGATTTTTTGGTTCGAGGGAAAGAAGCATGCTACTATCATCAGCGAAATCCTGTGTTATGAAAGGATATAGACTGAGAATTTAAGAACATGATCTTTCAGCCCCAGAGTATGAGGCTATGAGCATAAAGAGGGATACTAAACATAGTATTTTACGGCAAACAGTTTCAACTAAGGGAAAACAACCCATCACCCTGTTGTATCTCACTGCACAAGACTCATGAGGTTTGATTTTACGTTTGAGGCTTCATGAAACATTTCAGTACAGCATTGTGTATCTAGAATAAGATCATGTTTGCCTTACTGTTTTACTGAATAACAGACAGTGAGGAATCTGATTAAGCAATTATACCTTAAGATGTTCTTTACATCTAGTCAGGCATTTGTGATTTAAATTGCATGGCCGAAATAAGAATTCTCTTGTGTAAATAGTCAATTTAAAATTCCTGGTTCCCAACTGTTTTCTTATCTTTAAGGTAATACTTCATTTTTGTAGTGTGATAGGAACTAACTTCCAAGCTAGCTTGCTATTTATGTTTATCTACTCCACATATAACCCCTTGGTGTAACAGTAGATTTGAATTGGTGCAGCCATGTCATAAATATTGAGACCGGTATACAGATCTGACTTTGTGTATTTTGGAAAAATGGTTTGTCCTTGAGGATATGATCGGGAACTCCTGAAATATGTTAAAGATCCCCCAAAAGTCCAAATCTGTGTTGGAAAGACATGAAATCTACTGAGAAAAAATTACAGTCCCAGAGACGTATACAGTAATATTGGAGGCAGATGTTTTGTGCACTTCCTCAAAATGCACTCAGAAAAGAGGAACATGGCTTTATCTGTGTTTTAGTACTGCTGAAAAAACCCCTTCCTATGTCATTTCTAATAACACAAGCCACAGCCTAGCCACAGAATTCATTCAAGCATGATGTCAGCAGTAAAGCTCCGTCTAATGGTAAATGAACAGAGTCAGAACATAGGTGTTTACGATCAAGCCCAGCAGATCAGTACCCACACCATGTCCCGGCTCCTGTAACTTTCTCTGTGGTGTTAGCGGTGAGGTGGTCGGTGTCGCAGCACACGGATGGATGCTGTACCATTCTGGACCATCAGTTGGGTGACCAAGTCCAAACTCAGCCCTGCTACCTTCTCCCCATTCACCTCCAGGATCTCGTCACCCACTCCCAGCAGTCCAGCATACAGCTTCTGAGTACTGCTGTCCCCCATGTCCTCCACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214786 True 2358 lncRNA 0.39 1 14647302 14649659

Neighbor

gene id symbol gene type direction distance location
plekhb2 plekhb2,LOC106613863 coding downstream 27617 14614640 ~ 14619685 (-)
cts12 LOC108270686,LOC103033790 coding downstream 59571 14581544 ~ 14587731 (-)
ttc39c ttc39c,LOC108270684,LOC108429509,LOC107653643,LOC107669847 coding downstream 98694 14527131 ~ 14548608 (-)
LOC113534236 NA coding downstream 125642 14517370 ~ 14521660 (-)
matk matk coding downstream 212328 14420490 ~ 14434974 (-)
stx6 stx6,LOC107715114,LOC107731540,LOC107669815,LOC107653648 coding upstream 4044 14653703 ~ 14666953 (-)
patj patj,inadl,LOC107715056 coding upstream 61937 14711596 ~ 14838457 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 coding upstream 218264 14867923 ~ 15022648 (-)
nphs2 nphs2 coding upstream 477599 15127258 ~ 15132792 (-)
LOC113535381 NA coding upstream 638426 15288085 ~ 15298641 (-)
G181470 NA non-coding downstream 1931 14643368 ~ 14645371 (-)
G181468 LOC108270690 non-coding downstream 4373 14642558 ~ 14642929 (-)
G181467 NA non-coding downstream 4826 14641892 ~ 14642476 (-)
G181465 NA non-coding downstream 6443 14640596 ~ 14640859 (-)
G181463 LOC108270690 non-coding downstream 8451 14637722 ~ 14638851 (-)
G181638 LOC100304758 non-coding upstream 21250 14670909 ~ 14672729 (-)
G181703 NA non-coding upstream 255192 14904851 ~ 14907232 (-)
G181713 NA non-coding upstream 289378 14939037 ~ 14944216 (-)
G181721 NA non-coding upstream 328012 14977671 ~ 14982559 (-)
LOC117598447 NA non-coding upstream 410472 15060131 ~ 15064037 (-)
lama3 LOC108270685 other downstream 67555 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 139692 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 153443 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 186965 14437360 ~ 14460337 (-)
rx1 LOC108270609 other downstream 232233 14408726 ~ 14415069 (-)
G182210 NA other upstream 1041115 15690774 ~ 15692350 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 1625223 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 2596113 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 2693156 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 4666460 19316119 ~ 19316374 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G143430 NA non-coding CM030140.1 CM030140.1 4187958 ~ 4191281 (-)