calr3a (calr3,calr3a,LOC107702625,LOC107717161,LOC107561598)


Basic Information

Item Value
gene id calr3a
gene name calr3,calr3a,LOC107702625,LOC107717161,LOC107561598
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14375485 ~ 14382765 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928608.2
cgcCGGACCAATCAGCCGCAGCCATCTGTGCAGGAACAGATAGGTGACGGAGACCCGCTGCACATTTCTCCTCTTTACCTTTTTAATACTCGCTCGTTTTGATCGCTCGAGGCTGCTAGAAATCACCTCGCTATTCAGGTGCAAATATGAGAATTTCGCTTGCACTTTTTGCCGCTTTTGCTGTAGGGCTCACTGTCGACGCGACGGTGTACTTCAAGGAGCAGTTTCTGGATGGAGATGGGTTTAAAAGTCGATGGGTGGAGTCCAAGCACAAATCAGATTATGGACAGTGGAAACTTTCTGCAGGAAAGTTCTACGGAGATGCTGAGCTTGACAAAGGTCTCCAGACAAGCCAGGACGCCCGGTTTTACGCTCTGTCCAGTCGGTTCGATCCTTTCAGCAACGAAGGTAAACCTCTGGTGATTCAGTTCACAGTGAAACATGAGCAGAAGATCGACTGCGGAGGTGGCTATGTAAAAATCTTCCCAGCTGATCTGGACCAGGCTGAAATGCACGGCGAATCTCAGTATTACATCATGTTTGGTCCTGACATCTGCGGCTACAGCACCAAGAAAGTGCACgtcatttttaattacaaagGACAGAACCATCTGATCAAGAAAGACATCCGATGCAAAGATGATGAGTTCACAAACCTGTACACGCTGATCCTGCGGCCCGACCAGACCTACGAAGTGAAAATCAACAATGAGAAAGTGGAGTCAGGCTCTCTGGAGGAGGACTGGGACTTCCTTCCTCCCAAAAAGATCAAGGATCCAGAGGCAAAGAAGCCAGAGGACTGGGACGACCGTGCCAAAATTGACGATCCTGAGGACACAAAACCAGAGGACTGGGATAAACCCGAGAACATTCCTGATCCTGATGCCAAGAAGCCCGATGACTGGGATGAAGACATGGACGGCGAGTGGGAGCCACCCATGATCCCTAACCCCGAGTACAAGgGTGAATGGAAACCTAAGCAGATCAACAATCCCAACTACAAAGGAACGTGGGAGCATCCTGAGATCGACAACCCAGATTACACACCAGATAACTCAGTTTACAAGTATGACAACATTGGAGTTATCGGATTGGACCTGTGGCAGGTGAAATCCGGTACCATCTTTGATAACTTCCTAATCACTGACGACGTCAAGGAGGCAGAGGATATCGGCAAAGAGACATGGGGAGCCACAAAGGGCCCAGAGAAGAAGATGAAGGATaagcaggaagaggaggagaggaaacagagggaagaggaggagaagaacaAGAAGGAAAGCGAAGGTGACGAGGAAGGCTACGATGAACCGGAAGACGAACCAGAAGAGGTCACGGAGGAGGAAACTCCAGAGGAGCCCAATCTGCTGGACGATGAAGAAGATGACCAAGATAAGGCTACTAAAGATGAGTTGTAGACAGCATCAGAGCTTTCGAGCATATCTTAGAAGTAACCTACTGATCCTCCCCCACTCAGTGAAGCTCTTTCTGTGGGCTCTAACTACCCAACCAGGACAATAGAGTAAGGGTGTGCTGTggttttatttcagttcagttgGTGAGGATTGTTTTCCCACCGCTGCGCCCCTTTGGTTTCTATCATAAATTAATCCTATGAGATATTAGCCGTgccctggattttttttttctactgctGCTACCCGGCTTCTCCAATTCCCACCCAAGTCACAggtaaaactaaattaaatggAGTTTGGATTATTGCCATGATGTCTTGAGGGGGAAAAATGATGAGTGTATCATTTTTAGgttatttgcactttttttaaataaacgatTTTCTTAAACCGTT

Function

symbol description
calr3a Predicted to enable calcium ion binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including axis; cardiovascular system; hatching gland; periderm; and polster. Orthologous to human CALR3 (calreticulin 3).
calr3 Predicted to enable several functions, including calcium ion binding activity; protein folding chaperone; and unfolded protein binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Located in endoplasmic reticulum lumen and nuclear envelope.

NR:

description
calreticulin

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08057 CALR; calreticulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928608.2 True 1813 mRNA 0.47 9 14375485 14382765

Neighbor

gene id symbol gene type direction distance location
rad23ab LOC108271249,LOC107704496,LOC107717165 coding downstream 1457 14362323 ~ 14374028 (-)
fbn2b fbn3,fbn2b,LOC108441289,LOC106573567,LOC106613712 coding downstream 57648 14241303 ~ 14317837 (-)
uhrf1 uhrf1 coding downstream 195905 14165166 ~ 14179580 (-)
kdm4b kdm4b,LOC108271011,LOC107717157,LOC105011321,LOC106574093 coding downstream 214880 14097654 ~ 14160605 (-)
tbxa2r nup160,LOC108271239 coding downstream 847721 13516683 ~ 13527764 (-)
cherp cherp coding upstream 7766 14390531 ~ 14405495 (-)
matk matk coding upstream 37725 14420490 ~ 14434974 (-)
LOC113534236 NA coding upstream 134605 14517370 ~ 14521660 (-)
ttc39c ttc39c,LOC108270684,LOC108429509,LOC107653643,LOC107669847 coding upstream 144366 14527131 ~ 14548608 (-)
cts12 LOC108270686,LOC103033790 coding upstream 198779 14581544 ~ 14587731 (-)
G181207 NA non-coding downstream 171754 14156503 ~ 14203731 (-)
G181205 NA non-coding downstream 238530 14136454 ~ 14136955 (-)
G181197 NA non-coding downstream 250562 14080499 ~ 14124923 (-)
G181128 NA non-coding downstream 319870 14055408 ~ 14055615 (-)
G181062 NA non-coding downstream 655728 13718323 ~ 13719757 (-)
G181298 NA non-coding upstream 52536 14435301 ~ 14435614 (-)
G181401 NA non-coding upstream 98764 14481529 ~ 14483184 (-)
G181453 NA non-coding upstream 243670 14626435 ~ 14627355 (-)
G181462 NA non-coding upstream 253467 14636232 ~ 14636441 (-)
G181463 LOC108270690 non-coding upstream 254957 14637722 ~ 14638851 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other downstream 13838 14358520 ~ 14361647 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other downstream 592358 13546914 ~ 13783127 (-)
rpp21 LOC108271386 other downstream 1132285 13239723 ~ 13243200 (-)
rc3h1a rc3h1,LOC108429496 other downstream 1592950 12752078 ~ 12782535 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 1655009 12717361 ~ 12720476 (-)
rx1 LOC108270609 other upstream 25961 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 54595 14437360 ~ 14460337 (-)
LOC113532209 LOC108271183 other upstream 104355 14487120 ~ 14493859 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other upstream 114385 14497150 ~ 14507610 (-)
lama3 LOC108270685 other upstream 168141 14550906 ~ 14579747 (-)

Expression


Co-expression Network