uhrf1 (uhrf1)


Basic Information

Item Value
gene id uhrf1
gene name uhrf1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14165166 ~ 14179580 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308945.1
gtttagtttagtttacgGCTTTCCcttaaatgttttcttaaaaaaaaaaattggcagaCATTGTCTCTTTCGTTGTCTGATATgataacatttaaaacactaaaaatgctttttaaagacCATAACGAGGTTTATGTCCATAAAAAGTCGTTACATTAGCATAATCTCGCGATATGTAACCTAACGTAGGCACGTGCTGCCGCGAGAGCTCGATTTCGCGCGCTGAGCCGAAAGCTCCGGTCAGAGAAGTGATTGACGGGTGTGTAAGCCAATCTGTGAGTGGATTTCAGCCCACAGGAACCAATAGAAACGCGACATCGCCTGCCGCAGGAGGGGAAAACACGTTGTTGAacgaattttttttattgaatcgCTGTACGAGGTTTTATGTAGTGCAGGTTTAAGAGTCAAAAGAGTTTTTGTATTTCAGTCTGACGCTTGTTTGCTGAATTATAACCTGTTGCTTTCTTGTTTTCGAGAGGACGTAAAGACAGAGGGCTGCTGCAATGTGGATCCAGGTGCGCACTATGGACGGTAAAGAGACCCACAGGGTCGACTCCCTGTCCAAACTCACTAAAGTGGACGAGCTGAGGCTGCGAATCATGGAGCTCTTCAACGTTGAGCCTGAGAGACAGAGGCTCTTCTACAGAGGCAAACAGATGGAGGATGGCCACACTATTTTCGACTACAATGTGGGCCTGAATGACATTGTTCAGCTACTCGTGAGACAGGCGCTTCCTGCAGTCTCTTTGCCCAAAGACAAGGAGGCCGAGCTGTCAGACTCTGACTCGGGCTGCGGTTCAGGTCAGAGCGAGTCGGATAAGAGCTCCACTCACGGAGAGTGTGAGGGTCAGAGCGCTGGAACCTCAGCCCAGAGTGACCTCATCGACCCGGGCTTTGGCCTCTATAAGATAAATGAGTTTGTAGACGCCAGAGACCTGAATATGGGAGCTTGGTTTGAGGCTCAGATCTTAAACGTGACAAAAACTCCCAAACCCGCAGAAGGTGAAGGCATGGAAACGGATGGAGAGGACGAGATCCGCTACCACATCAAATACGAAGATTACCCGGAGAACGGAGTGGTGCAGCTCCAGGGGAAGGATGTGCGCCCACGCGCCCGCACCATCTACCAGTGGCACCAGCTGGAGGAGGGCATGGTGGTCATGGTGAACTACAACCCCGACGAGCCCAAAGAGCGTGGTTACTGGTACGATGCTCAGATCCAGAGGAAGAGGGAGACACGCACCCAGAGAGAGATTTTTGGCAAAATACTGCTCGGGGATGCTGGTGACTCTCTGAATGACTGCCGGATCTTGTTTGTGAATGAAATCTACAAAATCGAAGAGGCTGGAAGCTCTGAGGGTCCCGCAGCCGCTTCTGACAGCCCCCTGAAGAgatcCAACGGGCCAGAGTGTAAACACTGTAAGGATGACCCCAAGAAAAACTGCCGCTGGTGTAACTGCCGTGTGTGTGGGGTGAAGCAGGACCCGGACAAACAGCTGCTGTGCGATGAGTGTGACATGGCCTTCCACACATACTGCCTCAACCCACCTCTCACCACCATCCCAACTGATGAGGACTGGTACTGCCCCGAGTGTCGGAATGACGCGAGTGAGGTTGTCCTGGCTGGAGAGAAGCTGAAGGAAAGCAAGAAGAAAGCAAAGATGGCGTCTGCCAGCTCGTCCAGCCAGAGAGATTGGGGCAAAGGTATGGCGTGTGTGGGCCGCACCAAACAGTGTACCATCGTTCCCTCCAACCATTACGGGCCTGTGCCAGGAGTCCCTGTGGGTACCCTCTGGAAGTTTAGAGTGCAGGTGAGTGAGTCTGGAGTCCACAGGCCTCACGTTGCAGGGATCCATGGCCGAAGCAACGACGGTGCTTATTCTCTCGTGCTGGCTGGAGGCTATGAGGACGACATGGATGATGGTAACGAGTTTACATACACGGGCTCCGGTGGTCGGGATCTCTCTGGTAACAAGCGAACTGCCGAACAATCCTGCGATCAGAAACTCACCAATATGAACAGGGCGCTGGCTTTGAACTGCAACGCGCCGGTGAACGAGAAGGATGGCGCCGAGGCAAAGGACTGGAAGGCGGGGAAGCCTGTGAGGGTGGTGCGCAGTTCTAAAGGCCGCAAGCACAGCAAATACTGCCCAGAAGATGGGAACAGATATGATGGCATTTACAAGGTGGTGAAGTACTGGCCAGAGAAGGGCAAGTCAGGATTCCTAGTGTGGAGATACCTGCTCAAAAGGAATGACGATGAACCTGCCCCGTGGACCCGGGATGGCAAAGAACGCATTAAAAAGCTTGGCCTCACCATGCAGTATCCTGAAGGTTATCTGGAAGCAGTGGCAGCAAAGGAGAAGGAAAAGGAGAATAAGAACGAGGACGAGGTGGCTGAAACGCCTACCAAGGGCAAGAGGAAGCGGAAATCTCAGGCAGTTGAGGATGaggagaaaacttcaccacctAAGAGCACATCCAAGAAGGTCAAAGTGGAGGCCTACAAGCTGACCAAGGAGCAGAAGGCCCTGATTAAGGAAGACGAGCTCAACAAGAAACTTTGGGATGAGGCCATGGAGTCTTTAAGTCTAGGACCAAGATTCATAAACAAGGTGGAGGAAGTTTTCCTGTGTATCTGCTGCCAAGAAGTTGTTTACCAGCCCATCACCACAGAGTGCCAGCACAATGTCTGCAGGGAATGTCTCCAGCGGTCCTTCAAAGCAGAGGTATACTCCTGCCCCGCCTGCCGTCACGATCTAGGAAAGAACTACCAGATGACGGTGAACAAAGCTCTACAAGCCATCCTGACCCAGCTGTTCCCCGGCTACAGCAGCGGCCGATGATGACCGTCTGTTACGACAAAACATGCCGAGGAACTAGTAAGGGCAGTGCTGCGCATCGAGACTGAATTAAACACCACGATAAAAGTCACCTTTCAAATTATTGAACAAGTCGTGAGCTAATCAGGGCGTAGGGTCACCCGTAACCCGTTAAATTTGTTTGGTCCGATTCTTAGCAGGGCTGAACTTCGTAACCTGCTCTCTTTTATTTAGCCCATCAGGTAGATCTTCCCCTCCCAATACACACCTTATATTAACAGACCTCTTATAATAGCTTTGTAGAGATGTTTTTAGGTGTAGGAGCTTCCCgttatgaaatgtattttctgaATTACTCTGCACCAGCACATCTTTTTGAAAAACCTTCCGCTacgcacaactgcactatttgcttCTAgcaaaaatcctttttttaattttttttggccaggGATAAGTGGACATATTTTGATAGCAGGTATGTAGGCATGCACTGGCATCAGGatccttttaaaacatttgattcAGATCAGATTTTTGTCTAACAGCCGTGTATCTTGACACCCCCTAGAAAGTATTCCTTCATGGGTGATTTAACTAAAAGCTAATCAGttctattatattaaaaatatgcataaaatgaGCTTGTTATCCCTTAACTTTGTCTTGGCTTTGCTTTCTAACTACTGTATGTGCTTAGAAATtccactttattatttttgcttttgttttattcccgTTATGCAATCCGGTTATCCCTCGTTCTCCCACCATGGACTTCAGAAGGAAACCGTCAGACTGTTAATTCTCCGAACAAATGATCACCAAGTGCACCTCCTGTTCAGTGAATATTTAATGACATATCTCAAAGTTCTTCACTTTGTTCTTATCACAcaatatttgataaataaacgCCTAAGGCCAGAGAGTTTTGTTATACCTCAA

Function

symbol description
uhrf1 Predicted to enable several functions, including hemi-methylated DNA-binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Acts upstream of or within several processes, including animal organ development; hypermethylation of CpG island; and intestinal epithelial structure maintenance. Located in cytoplasm and nucleus. Is expressed in several structures, including brain; eye; liver; pleuroperitoneal region; and presumptive neural retina. Orthologous to human UHRF1 (ubiquitin like with PHD and ring finger domains 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase UHRF1

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007049 cell cycle biological_process
GO:0010216 maintenance of DNA methylation biological_process
GO:0016574 histone ubiquitination biological_process
GO:0031100 animal organ regeneration biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0000791 euchromatin cellular_component
GO:0000792 heterochromatin cellular_component
GO:0005657 replication fork cellular_component
GO:0005737 cytoplasm cellular_component
GO:0044729 hemi-methylated DNA-binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10638 UHRF1, NP95; E3 ubiquitin-protein ligase UHRF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308945.1 True 3770 mRNA 0.48 17 14165166 14179580

Neighbor

gene id symbol gene type direction distance location
kdm4b kdm4b,LOC108271011,LOC107717157,LOC105011321,LOC106574093 coding downstream 4561 14097654 ~ 14160605 (-)
tbxa2r nup160,LOC108271239 coding downstream 637402 13516683 ~ 13527764 (-)
si:zfos-943e10.1 LOC108270864,LOC103026993 coding downstream 673992 13470587 ~ 13491174 (-)
lonp1 lonp1,LOC107744642,LOC107679084,LOC107548847 coding downstream 718239 13432083 ~ 13446927 (-)
lmnb2 lmnb2 coding downstream 740744 13405769 ~ 13424422 (-)
fbn2b fbn3,fbn2b,LOC108441289,LOC106573567,LOC106613712 coding upstream 61723 14241303 ~ 14317837 (-)
rad23ab LOC108271249,LOC107704496,LOC107717165 coding upstream 182743 14362323 ~ 14374028 (-)
calr3a calr3,calr3a,LOC107702625,LOC107717161,LOC107561598 coding upstream 195905 14375485 ~ 14382765 (-)
cherp cherp coding upstream 210951 14390531 ~ 14405495 (-)
matk matk coding upstream 240910 14420490 ~ 14434974 (-)
G181205 NA non-coding downstream 28211 14136454 ~ 14136955 (-)
G181197 NA non-coding downstream 40243 14080499 ~ 14124923 (-)
G181128 NA non-coding downstream 109551 14055408 ~ 14055615 (-)
G181062 NA non-coding downstream 445409 13718323 ~ 13719757 (-)
G181047 NA non-coding downstream 643445 13510451 ~ 13521721 (-)
G181298 NA non-coding upstream 255721 14435301 ~ 14435614 (-)
G181401 NA non-coding upstream 301949 14481529 ~ 14483184 (-)
G181453 NA non-coding upstream 446855 14626435 ~ 14627355 (-)
G181462 NA non-coding upstream 456652 14636232 ~ 14636441 (-)
G181463 LOC108270690 non-coding upstream 458142 14637722 ~ 14638851 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other downstream 382039 13546914 ~ 13783127 (-)
rpp21 LOC108271386 other downstream 921966 13239723 ~ 13243200 (-)
rc3h1a rc3h1,LOC108429496 other downstream 1382631 12752078 ~ 12782535 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 1444690 12717361 ~ 12720476 (-)
ncln ncln other downstream 2133160 12020412 ~ 12032006 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 178940 14358520 ~ 14361647 (-)
rx1 LOC108270609 other upstream 229146 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 257780 14437360 ~ 14460337 (-)
LOC113532209 LOC108271183 other upstream 307540 14487120 ~ 14493859 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other upstream 317570 14497150 ~ 14507610 (-)

Expression


Co-expression Network