RNA id: XM_034308945.1


Basic Information

Item Value
RNA id XM_034308945.1
length 3770
RNA type mRNA
GC content 0.48
exon number 17
gene id uhrf1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14165166 ~ 14179580 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtttagtttagtttacgGCTTTCCcttaaatgttttcttaaaaaaaaaaattggcagaCATTGTCTCTTTCGTTGTCTGATATgataacatttaaaacactaaaaatgctttttaaagacCATAACGAGGTTTATGTCCATAAAAAGTCGTTACATTAGCATAATCTCGCGATATGTAACCTAACGTAGGCACGTGCTGCCGCGAGAGCTCGATTTCGCGCGCTGAGCCGAAAGCTCCGGTCAGAGAAGTGATTGACGGGTGTGTAAGCCAATCTGTGAGTGGATTTCAGCCCACAGGAACCAATAGAAACGCGACATCGCCTGCCGCAGGAGGGGAAAACACGTTGTTGAacgaattttttttattgaatcgCTGTACGAGGTTTTATGTAGTGCAGGTTTAAGAGTCAAAAGAGTTTTTGTATTTCAGTCTGACGCTTGTTTGCTGAATTATAACCTGTTGCTTTCTTGTTTTCGAGAGGACGTAAAGACAGAGGGCTGCTGCAATGTGGATCCAGGTGCGCACTATGGACGGTAAAGAGACCCACAGGGTCGACTCCCTGTCCAAACTCACTAAAGTGGACGAGCTGAGGCTGCGAATCATGGAGCTCTTCAACGTTGAGCCTGAGAGACAGAGGCTCTTCTACAGAGGCAAACAGATGGAGGATGGCCACACTATTTTCGACTACAATGTGGGCCTGAATGACATTGTTCAGCTACTCGTGAGACAGGCGCTTCCTGCAGTCTCTTTGCCCAAAGACAAGGAGGCCGAGCTGTCAGACTCTGACTCGGGCTGCGGTTCAGGTCAGAGCGAGTCGGATAAGAGCTCCACTCACGGAGAGTGTGAGGGTCAGAGCGCTGGAACCTCAGCCCAGAGTGACCTCATCGACCCGGGCTTTGGCCTCTATAAGATAAATGAGTTTGTAGACGCCAGAGACCTGAATATGGGAGCTTGGTTTGAGGCTCAGATCTTAAACGTGACAAAAACTCCCAAACCCGCAGAAGGTGAAGGCATGGAAACGGATGGAGAGGACGAGATCCGCTACCACATCAAATACGAAGATTACCCGGAGAACGGAGTGGTGCAGCTCCAGGGGAAGGATGTGCGCCCACGCGCCCGCACCATCTACCAGTGGCACCAGCTGGAGGAGGGCATGGTGGTCATGGTGAACTACAACCCCGACGAGCCCAAAGAGCGTGGTTACTGGTACGATGCTCAGATCCAGAGGAAGAGGGAGACACGCACCCAGAGAGAGATTTTTGGCAAAATACTGCTCGGGGATGCTGGTGACTCTCTGAATGACTGCCGGATCTTGTTTGTGAATGAAATCTACAAAATCGAAGAGGCTGGAAGCTCTGAGGGTCCCGCAGCCGCTTCTGACAGCCCCCTGAAGAgatcCAACGGGCCAGAGTGTAAACACTGTAAGGATGACCCCAAGAAAAACTGCCGCTGGTGTAACTGCCGTGTGTGTGGGGTGAAGCAGGACCCGGACAAACAGCTGCTGTGCGATGAGTGTGACATGGCCTTCCACACATACTGCCTCAACCCACCTCTCACCACCATCCCAACTGATGAGGACTGGTACTGCCCCGAGTGTCGGAATGACGCGAGTGAGGTTGTCCTGGCTGGAGAGAAGCTGAAGGAAAGCAAGAAGAAAGCAAAGATGGCGTCTGCCAGCTCGTCCAGCCAGAGAGATTGGGGCAAAGGTATGGCGTGTGTGGGCCGCACCAAACAGTGTACCATCGTTCCCTCCAACCATTACGGGCCTGTGCCAGGAGTCCCTGTGGGTACCCTCTGGAAGTTTAGAGTGCAGGTGAGTGAGTCTGGAGTCCACAGGCCTCACGTTGCAGGGATCCATGGCCGAAGCAACGACGGTGCTTATTCTCTCGTGCTGGCTGGAGGCTATGAGGACGACATGGATGATGGTAACGAGTTTACATACACGGGCTCCGGTGGTCGGGATCTCTCTGGTAACAAGCGAACTGCCGAACAATCCTGCGATCAGAAACTCACCAATATGAACAGGGCGCTGGCTTTGAACTGCAACGCGCCGGTGAACGAGAAGGATGGCGCCGAGGCAAAGGACTGGAAGGCGGGGAAGCCTGTGAGGGTGGTGCGCAGTTCTAAAGGCCGCAAGCACAGCAAATACTGCCCAGAAGATGGGAACAGATATGATGGCATTTACAAGGTGGTGAAGTACTGGCCAGAGAAGGGCAAGTCAGGATTCCTAGTGTGGAGATACCTGCTCAAAAGGAATGACGATGAACCTGCCCCGTGGACCCGGGATGGCAAAGAACGCATTAAAAAGCTTGGCCTCACCATGCAGTATCCTGAAGGTTATCTGGAAGCAGTGGCAGCAAAGGAGAAGGAAAAGGAGAATAAGAACGAGGACGAGGTGGCTGAAACGCCTACCAAGGGCAAGAGGAAGCGGAAATCTCAGGCAGTTGAGGATGaggagaaaacttcaccacctAAGAGCACATCCAAGAAGGTCAAAGTGGAGGCCTACAAGCTGACCAAGGAGCAGAAGGCCCTGATTAAGGAAGACGAGCTCAACAAGAAACTTTGGGATGAGGCCATGGAGTCTTTAAGTCTAGGACCAAGATTCATAAACAAGGTGGAGGAAGTTTTCCTGTGTATCTGCTGCCAAGAAGTTGTTTACCAGCCCATCACCACAGAGTGCCAGCACAATGTCTGCAGGGAATGTCTCCAGCGGTCCTTCAAAGCAGAGGTATACTCCTGCCCCGCCTGCCGTCACGATCTAGGAAAGAACTACCAGATGACGGTGAACAAAGCTCTACAAGCCATCCTGACCCAGCTGTTCCCCGGCTACAGCAGCGGCCGATGATGACCGTCTGTTACGACAAAACATGCCGAGGAACTAGTAAGGGCAGTGCTGCGCATCGAGACTGAATTAAACACCACGATAAAAGTCACCTTTCAAATTATTGAACAAGTCGTGAGCTAATCAGGGCGTAGGGTCACCCGTAACCCGTTAAATTTGTTTGGTCCGATTCTTAGCAGGGCTGAACTTCGTAACCTGCTCTCTTTTATTTAGCCCATCAGGTAGATCTTCCCCTCCCAATACACACCTTATATTAACAGACCTCTTATAATAGCTTTGTAGAGATGTTTTTAGGTGTAGGAGCTTCCCgttatgaaatgtattttctgaATTACTCTGCACCAGCACATCTTTTTGAAAAACCTTCCGCTacgcacaactgcactatttgcttCTAgcaaaaatcctttttttaattttttttggccaggGATAAGTGGACATATTTTGATAGCAGGTATGTAGGCATGCACTGGCATCAGGatccttttaaaacatttgattcAGATCAGATTTTTGTCTAACAGCCGTGTATCTTGACACCCCCTAGAAAGTATTCCTTCATGGGTGATTTAACTAAAAGCTAATCAGttctattatattaaaaatatgcataaaatgaGCTTGTTATCCCTTAACTTTGTCTTGGCTTTGCTTTCTAACTACTGTATGTGCTTAGAAATtccactttattatttttgcttttgttttattcccgTTATGCAATCCGGTTATCCCTCGTTCTCCCACCATGGACTTCAGAAGGAAACCGTCAGACTGTTAATTCTCCGAACAAATGATCACCAAGTGCACCTCCTGTTCAGTGAATATTTAATGACATATCTCAAAGTTCTTCACTTTGTTCTTATCACAcaatatttgataaataaacgCCTAAGGCCAGAGAGTTTTGTTATACCTCAA

Function

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007049 cell cycle biological_process
GO:0010216 maintenance of DNA methylation biological_process
GO:0016574 histone ubiquitination biological_process
GO:0031100 animal organ regeneration biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0000791 euchromatin cellular_component
GO:0000792 heterochromatin cellular_component
GO:0005657 replication fork cellular_component
GO:0005737 cytoplasm cellular_component
GO:0044729 hemi-methylated DNA-binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10638 UHRF1, NP95; E3 ubiquitin-protein ligase UHRF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214476 lncRNA downstream 28211 14136454 ~ 14136955 (-) True G181205
TU214468 lncRNA downstream 40243 14080499 ~ 14124923 (-) True G181197
TU214377 lncRNA downstream 109551 14055408 ~ 14055615 (-) True G181128
TU214309 lncRNA downstream 445409 13718323 ~ 13719757 (-) True G181062
TU214285 lncRNA downstream 594997 13546956 ~ 13570169 (-) False ptprsa
TU214582 lncRNA upstream 255721 14435301 ~ 14435614 (-) True G181298
TU214672 lncRNA upstream 257821 14437401 ~ 14438034 (-) False zfr2
TU214671 lncRNA upstream 257968 14437548 ~ 14438034 (-) False zfr2
TU214699 lncRNA upstream 301949 14481529 ~ 14483184 (-) True G181401
TU214706 lncRNA upstream 307809 14487389 ~ 14491488 (-) False LOC113532209
XM_034308944.1 mRNA downstream 4561 14097654 ~ 14160605 (-) False kdm4b
XM_034308943.1 mRNA downstream 4561 14097654 ~ 14160605 (-) True kdm4b
XM_026943826.2 mRNA downstream 382039 13546914 ~ 13783127 (-) False ptprsa
XM_026943911.2 mRNA downstream 382039 13546914 ~ 13783127 (-) True ptprsa
XM_034308608.1 mRNA downstream 437089 13546914 ~ 13728077 (-) False ptprsa
XM_026913208.2 mRNA upstream 61723 14241303 ~ 14317837 (-) True fbn2b
XM_026915563.2 mRNA upstream 178940 14358520 ~ 14361382 (-) True LOC113527598
XM_026915579.2 mRNA upstream 182743 14362323 ~ 14374028 (-) False rad23ab
XM_026915587.2 mRNA upstream 182743 14362323 ~ 14374015 (-) False rad23ab
XM_034308657.1 mRNA upstream 182743 14362323 ~ 14373751 (-) True rad23ab
TU214009 other downstream 922004 13239749 ~ 13243162 (-) False rpp21
trnam-cau_27 other downstream 928691 13236403 ~ 13236475 (-) True trnam-cau_27
TU213621 other downstream 1444690 12717361 ~ 12720476 (-) True G180485
TU212758 other downstream 2661204 11496074 ~ 11503962 (-) False LOC117598430
TU212749 other downstream 2749726 11409092 ~ 11415440 (-) False G179803
TU214564 other upstream 181356 14360936 ~ 14361647 (-) False LOC113527598
XR_004579086.1 other upstream 229146 14408726 ~ 14415069 (-) False rx1
XR_003402957.2 other upstream 260274 14439854 ~ 14460337 (-) False zfr2
XR_004579061.1 other upstream 373575 14553155 ~ 14579747 (-) False lama3
TU215666 other upstream 1511194 15690774 ~ 15692350 (-) True G182210

Expression Profile