RNA id: XM_034308657.1


Basic Information

Item Value
RNA id XM_034308657.1
length 2605
RNA type mRNA
GC content 0.48
exon number 11
gene id rad23ab
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14362323 ~ 14374028 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATTCCTATTTTAAACATGTCAGATATTAAATTCACATTCGGTACTAATAATGTCATGGTAATGCTGCTGTGTAGttttaataacacactaacTTTCGTCCTCAGAAATGACCACGCACTATTATTGACATTAGAGCAGGCTCCGTTATAGGTGGAGTTCCAAATGGCTCGCCAAcggacatgtagtgcactacatagtgtgtagAACGCAGTAATTTCACATCCTATATAGTGCACCAATATAGGAAGTAAGGAGTTGTTTAGGATTTAGCCTTTCTAATGCCATAACTGTTCAGGCATGTGTGTATTCAGCTGCTTAAAAAAGCCACTAGTTAAACACTAAAAAATGTGTGCCAGTAAGATGAAAAGTTCATCAGAcagtATGTAATCATATAGTCAAGACACATTTGGTGTGTGAAGTTTGCTGATTCAGTTTTGTGCTGGAGAGACCAGGCTAATGTAACTACCAAGCAATGAAAGCTCAGAGCCACCAGTTTAACATTCAGCCACTGCATGCTTCAGTCCGTATCAGTGATTTGGAAGATCctgttcatatatttttaatgttgacTTCTGTTATGTTATGAAACTTTATGTTGTAATAACATAACTGAGCCAAGTAGCATCttttgagGTACGAGCTCTTAAAGAGAAGATTGAATCTGAAAAGGGCCAGGATGCGTATCCCATAGCTGGACAGAAGCTCATCTATGCAGgTAAAATCTTGAATGATGACATACCTTTAAAAGAATACAAAATAGAGGAGAAGAACTTTGTTGTGGTCATGGTAACTAAGCCGAAACCAGCAGCTCCTCCTGTGGTTGCTATTCCTCTTCCTGACCTTTCACCTCAGCCCCTTCCTATACCTGCTCCCCCTCCATCTGCTCCAGCAGCCCCTGAACCCACCCCAACCCCCACACCCACCTCTACAACTGCAGTACCCATTCCTACAACTGCCCCTGCACCCACAATCACCCCTACAACTGCTCCTGCACCTGCAATCGCCCCGACAACTGCCCCTGCACCCACAATCGCCCTTACAACTGACCCTGCACCCACAGTCACCCCTACAACTGCCCCTGCACCCACAGTCACCCCTGCATCTGCAACTGCCCCAGCACCTACACCCACACCTGCCCTTGTTGAACCAGCGCAGTCTGTGGAGCCTCCTGCTCCTCCGGCCACGGCGCCCCCTGCTGCTGCCCATGCTGCCAGTGTGGAGCCGGTGGAGACAGAGAGTGCAAGTGCCCAGGCTGCAGATGCAGGTCAGCCGCAGAGAGCCGAACCAGAGCAGCCATCAAACCCCACTGCAGCTCTCTCAGCTGCCAGCATTATGGATGAACTGGGCCTTCTGGAGGAAGCAGCATCGATACTTGTCACAGGACAGGCATATGAGAATTTGGTGACAGAGATCATGTCCATGGGATATGAGAGGGAGCAGGTCGTCGCCGCCTTGAGAGCGAGCTACAACAATCCTGACCGAGCGGTGGAATACCTGCTCATGGGTATTCCTGCTGAGCCAGACCAGCCTGCACAGGAAGCAGTGCGGCCCGCcgtagaaacagagagacctcAACCTCCACCAGCAGCCACTGGTGCTACACCCTCCCAGGCCCCGCCCACCTCAGCTAACCCCCTGGAGTTCCTGAGGAACCAGCCGCAGTTTCAACAAATGCGTCAGATCATTCAGCAGAACCCAGCGCTCCTCCCTGCCCTGCTGCAGCAACTGGGCCGGGACAACCCTCAGCTCCTGCAGCAAATCACGCAGCATCAGGAGCGATTTGTGCAGATGCTTAATGAGCCACTGGGAGGAGAAGCGGAGGCAGCAGAGGCACAGGGAGCTCCACACACTAACTACATCCAGGTCACGCAGCAGGAGAAAGAGGCCATCGAGAGGTTAAAAGCTTTGGGCTTCCCTGAGGGACTAGTCATTCAGGCCTATTTCGCCTGTGAAAAAAACGAGAACCTAGCAGCCAACTTCCTGCTCCAGCAGACCTTCGACGACGAGTGAATGTGTAACATGGACTGAAACCCTAGGGGGCGATGGAGAGACTGAGAGTGCtagtttgtgtgtagtgtgcgcTTGTGGCAGAGTTTGAGAGGAGATTTTAAATGCGACTGCGAATACTTTAAGTTGGAGAGAAAAAGCCATGTTGTGAATTACTCTAATATCAGAGATCAGATTTCTGCCTGTATTAGATTATTTCACTTAGACAGTAggctgtgtgtctctgctgctGTTCTCGCCGAGCGTGCTGTGTGAATTTGCAGGTTTTTATCTCTGCTCTAAGTTATTGCAATTAAATCCTGCCAAGACCCAAAGACCCCTGAGTATGATCTCTCATCATGTCCTTACAGTATGTGTGGCACATGgtcttgctttttttgtttataattttcaCAAATGCTCTATAATCTGTAGTCAAGAATGGGATGTACCATTCTTTAAAGAACTGAATTTTATGACTTTGACTTGGAAATAACACAGTACTACCACATGTCCAATGAATAGACAACAAATTATATTGAAACCATTCTCTCTTGCCAAAAGTCTTGACAGTGTTTGGTGTCTTACCTAGGCACCTGAATAAAGGGGATGCCAAAA

Function

GO: NA

KEGG:

id description
K10839 RAD23, HR23; UV excision repair protein RAD23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214483 lncRNA downstream 158592 14156503 ~ 14203731 (-) True G181207
TU214476 lncRNA downstream 225368 14136454 ~ 14136955 (-) True G181205
TU214468 lncRNA downstream 237400 14080499 ~ 14124923 (-) True G181197
TU214377 lncRNA downstream 306708 14055408 ~ 14055615 (-) True G181128
TU214309 lncRNA downstream 642566 13718323 ~ 13719757 (-) True G181062
TU214582 lncRNA upstream 61550 14435301 ~ 14435614 (-) True G181298
TU214672 lncRNA upstream 63650 14437401 ~ 14438034 (-) False zfr2
TU214671 lncRNA upstream 63797 14437548 ~ 14438034 (-) False zfr2
TU214699 lncRNA upstream 107778 14481529 ~ 14483184 (-) True G181401
TU214706 lncRNA upstream 113638 14487389 ~ 14491488 (-) False LOC113532209
XM_026915563.2 mRNA downstream 941 14358520 ~ 14361382 (-) True LOC113527598
XM_026913208.2 mRNA downstream 44486 14241303 ~ 14317837 (-) True fbn2b
XM_034308945.1 mRNA downstream 182743 14165166 ~ 14179580 (-) True uhrf1
XM_034308944.1 mRNA downstream 201718 14097654 ~ 14160605 (-) False kdm4b
XM_026928608.2 mRNA upstream 1734 14375485 ~ 14382765 (-) True calr3a
XM_026919970.2 mRNA upstream 16780 14390531 ~ 14405495 (-) False cherp
XM_026919962.2 mRNA upstream 16780 14390531 ~ 14405495 (-) True cherp
XM_026919979.2 mRNA upstream 16780 14390531 ~ 14405494 (-) False cherp
XM_026923825.2 mRNA upstream 36811 14410562 ~ 14415069 (-) False rx1
TU214564 other downstream 676 14360936 ~ 14361647 (-) False LOC113527598
TU214009 other downstream 1119161 13239749 ~ 13243162 (-) False rpp21
trnam-cau_27 other downstream 1125848 13236403 ~ 13236475 (-) True trnam-cau_27
TU213621 other downstream 1641847 12717361 ~ 12720476 (-) True G180485
TU212758 other downstream 2858361 11496074 ~ 11503962 (-) False LOC117598430
XR_004579086.1 other upstream 34975 14408726 ~ 14415069 (-) False rx1
XR_003402957.2 other upstream 66103 14439854 ~ 14460337 (-) False zfr2
XR_004579061.1 other upstream 179404 14553155 ~ 14579747 (-) False lama3
TU215666 other upstream 1317023 15690774 ~ 15692350 (-) True G182210
TU216001 other upstream 1901131 16274882 ~ 16278809 (-) True micos13

Expression Profile