RNA id: XM_026919962.2


Basic Information

Item Value
RNA id XM_026919962.2
length 3139
RNA type mRNA
GC content 0.54
exon number 19
gene id cherp
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14390531 ~ 14405495 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aTCGACGAAGAAGAAGAACGAGCGCTAAAGGAAGCAGATGTTTCTGCTTCCGGTAGATTCGGGTCTAAttcatgcaaaaaataaatttcttagCCAGCTCTCGCaaagagcttcttttttttcttataagtAATTATTACAGAACAGTAGTTACGCCGGACAACGACTGGCTCTGAACATTATGGATATTTCCACGCCTCCAGAAGACCAAGAGCTTCGCAATGTCATCGACAAACTGGCCCAGTTTGTGGCCCGCAATGGACCCGAGTTCGAAAAGATGACCATGGAGAAACAGAAGGATAATCCAAAATTCTCCTTTCTCTTCGGAGGGGAATATTTTGGCTACTACAAGTACAAGCTTGCCATTGAGCAGCAGCAGCATCCAACCACTCATGATGATGAATATAAAATGGAAGTGCTTTGTAAGCCACCGGGTAAAGAAGCTCCTGATGTTCCACCCCCGATGACAatgcttcctcctcctcctatcCCCCCCAGCACTCCTTCAGTGGAGGAGCTCATTCAGCAGAGTCAGTGGAACctacagcagcaggagcagcaccTGCACAGCCTCCGACAGGAGCAGGTCAACGCAGCCATCGTGCTTGCCATGGAGCAGCAGATGCAGAAACTTTTGGTGGAAACGCAGCAGGACATGGCCGAGTTTGACAGCCTGCTTCAGCCGATCATTGACACATGCACCAAGGATGCCATTTCTGCTGGAAAGAACTGGATGTTCAACAACGCCAAGTCCCCACAACACTGTGAACTGATGACTTCACACCTCCGCAACCGCATCACAGCAGATACAGCGCACTTCGAGCTCCGCCTACACCTCATCTATCTCATAAATGATGTCCTGCATCACTGTCAGAGGAAGAACCAGAGGGATCTTTTGGCTGCCCTGCAGAAGGTTGTGGTGCCCATCTACTGCACCAGCTTCCTGGCAGTGGAGGAAGACAAGCAGCAGAAAATCACACGGTTGCTCCAGCTATGGGAGAAGAATGGTTACTTCGACGAGGTCACCATCCAGCAGCTCCAGAGTCCGGCCCTGGGCTTAGGACAGTATCAGGCGTCTCTGATTACGGAGTATGCTGCTGTTGTGCAGCCGGTGCAGTTGGCCTTTCAGCAGCAGATCCAGGCGCTGAAGactcagcatgaggagtttGTGGGCAACCTGAAGCAGCAGCAGAGTGTCGCTGTGGCAGCCGCAGCAGCTGCTGTAGGCCAGTTAGCTCCATCAGAGCCTGAGGGTAAAGGAGGGAACCAGCCCTCTATGACTGCACAGCCAGCAGATGTGAAACCTCCAATGACAGGCCCACCCCCGGGTGATTATGATGGTTCTCAGACGAGACAGCCTGATTCCAATCCTCCTGCCTCCTCTGATATTCCCTCCTCAAAGCCCGGCTGGTTTGATCCCCAGCATGGAATGCCATCCTGGAACCCTCAGCAACCTCCACCGTTTGACCCCACTCAAGCTCCGCCTCCATGCCCACCCTGGAACAGCCATGAGGGGATGTGGAATGAGAGGGAGCCGAGCTGGAGTAGCCCTCGAGATGGTGGCCCTGGGGGTCCAGGAGGCCCTTGGAGTAGCCAGAATGAGCCTCCGCCCTCATGGAGCGGACAGTTTGACCAGCCACCTTGGAGCAACCAGCCTGATCAGCCACCCTGGAGCCAGAGAGAGCCGCCTTTCCGCATGCAGCGGCCCCCACACTTCCGGGGGCCCTTCCCCCCACACCAGCAGCCACCTCCATTCAACCAGCCACCTCCACCACACAACTTCAACCGCTTCCCACCACGCTTCATGCAGGATGACTTCCCACCCCGGCATCACTTTGACCGGCCGCCGTTCCCACCACATCGGTTTGATTACCCACAGGGGGAATTCCCTGGGGaaatGGGTCCACCACACCACCACCCAAACCAGAGGATTCCACCCCCAGGAATGGGTGAACATCCTCCGTGGGGTAGTAACCAGCACCCAGACTTTGGGCCCCCACCACACGGCTTTAATGGCCAGTCACACCACATGAGACGGCAGAATCCCTCACATGTGAACCAGGACGACCCCAGTCTGGTGCCCAACGTTCCCTACTTCGACCTGCCCGCAGGCCTCATGGCCCCGCTAGTGAAACTGGAAGATCATGACTACAAGGCTCTGGACCCCAAAGACATCCGCTTGCCTCCTCCCATGCCTCCTAGTGACCGTCTGCTGGCTGCTGTGGAGGCTTTTTACAGTCCACCTTCCCATGACAGACCCAGGAACAGTGAGGGCTGGGAGCAGAACGGCCTGTATGAGTTCTTCAGAGCCAAGATGAGAGCAAGGAGGAAAAAGGAACAAGAGAAACGCAACAGCACACGAGGCAGTCGCTCACGGAGCCGCTCCCGTAGTCGAGGCAGATCATCGTCGCACTCCAGCTCCCGCTCCTCCAAATCGTCCCGCTCCAGGTCTTCCAGATCCCGTTCACGATCGCGCTCATACTCCAGATCCCGATCCAGAAGCAGGAGCCGCTCCAGATCAAGGTCCAGAAGCCGCTCTCGCTCCAGATCACGCTCTAGATCGCGCTCGCCTGACCGGCGACGACAAGCTGCAAAGTCGCGCAGCCCCACACCACCatCCACCTCCGGCTTGGGCTCTGCACCCCCGACTCAGCCTGATCTGAGGCTGGGCGAGGAGAACAAGGGCCATCAGATGCTCATGAAGATGGGATGGAGTGGCTCTGGAGGGCTTGGAGCGAAAGAGCAAGGCATTCAGGATCCTATTAAAGGAGGTGACGTGCGGGACAAGTGGGATCAGTACAAAGGTGTTGGAATTCCCCTGGATGACCCATATGTCAACTATAGAAGAAACAAAAGCTACAACTTTGTTGCACGGATGAAAGCTAGAGAGAAAGtgagtcGGGACACGCAGGAAGCGTCAACTACAGAATGATTCTCCATAACACTTTTTTAAGATATGAAAAAGTCACTCTCTTTGATGTTGCccttttgtttgaaaaattgaACTGGCCCTTTGGCTGTTTTCATTGTAACAAATCAAAATTTCATGTTGTAGTTTGAACATCAGTGTCATTGCAGTCCAATGGATTTAGCTTAGATTTAATACCCAGCACAAGTAAATAAAGCTGTTTTAATCATG

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12841 CHERP; calcium homeostasis endoplasmic reticulum protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214483 lncRNA downstream 186800 14156503 ~ 14203731 (-) True G181207
TU214476 lncRNA downstream 253576 14136454 ~ 14136955 (-) True G181205
TU214468 lncRNA downstream 265608 14080499 ~ 14124923 (-) True G181197
TU214377 lncRNA downstream 334916 14055408 ~ 14055615 (-) True G181128
TU214309 lncRNA downstream 670774 13718323 ~ 13719757 (-) True G181062
TU214582 lncRNA upstream 29806 14435301 ~ 14435614 (-) True G181298
TU214672 lncRNA upstream 31906 14437401 ~ 14438034 (-) False zfr2
TU214671 lncRNA upstream 32053 14437548 ~ 14438034 (-) False zfr2
TU214699 lncRNA upstream 76034 14481529 ~ 14483184 (-) True G181401
TU214706 lncRNA upstream 81894 14487389 ~ 14491488 (-) False LOC113532209
XM_026928608.2 mRNA downstream 7766 14375485 ~ 14382765 (-) True calr3a
XM_026915579.2 mRNA downstream 16503 14362323 ~ 14374028 (-) False rad23ab
XM_026915587.2 mRNA downstream 16516 14362323 ~ 14374015 (-) False rad23ab
XM_034308657.1 mRNA downstream 16780 14362323 ~ 14373751 (-) True rad23ab
XM_026915563.2 mRNA downstream 29149 14358520 ~ 14361382 (-) True LOC113527598
XM_026923825.2 mRNA upstream 5067 14410562 ~ 14415069 (-) False rx1
XM_026923817.2 mRNA upstream 5067 14410562 ~ 14415069 (-) True rx1
XM_026926414.2 mRNA upstream 14995 14420490 ~ 14434974 (-) True matk
XM_026917238.2 mRNA upstream 31865 14437360 ~ 14460337 (-) False zfr2
XM_026917180.2 mRNA upstream 31865 14437360 ~ 14460337 (-) False zfr2
TU214564 other downstream 28884 14360936 ~ 14361647 (-) False LOC113527598
TU214009 other downstream 1147369 13239749 ~ 13243162 (-) False rpp21
trnam-cau_27 other downstream 1154056 13236403 ~ 13236475 (-) True trnam-cau_27
TU213621 other downstream 1670055 12717361 ~ 12720476 (-) True G180485
TU212758 other downstream 2886569 11496074 ~ 11503962 (-) False LOC117598430
XR_004579086.1 other upstream 3231 14408726 ~ 14415069 (-) False rx1
XR_003402957.2 other upstream 34359 14439854 ~ 14460337 (-) False zfr2
XR_004579061.1 other upstream 147660 14553155 ~ 14579747 (-) False lama3
TU215666 other upstream 1285279 15690774 ~ 15692350 (-) True G182210
TU216001 other upstream 1869387 16274882 ~ 16278809 (-) True micos13