RNA id: XM_026926414.2


Basic Information

Item Value
RNA id XM_026926414.2
length 2132
RNA type mRNA
GC content 0.44
exon number 13
gene id matk
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14420490 ~ 14434974 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGAGCAGCATGACATCAGTTCAGCAAAACTAGATAAACACATTCAGATCCTCATTTCCTCAGTGTGCGCCGTTGAATGCTGCATGGACATGGAGTTGTAAGCCGTTTACAGTGTGTGGAAATCTAATGctgctgtttcctctctctagCGATGTCTACGaaaacatgGCTTCCTGGTACACAGTGTGTCGCCAAAAGTGACCACACAAGACCTAAACCCAATGAAATCTTCTATCGCAAAGGAGATATCCTTACCATTTTAGGTTTGGAGTTGTTAATGggGAAGGCCATCTACAGAGCCAAGCACAACAGGACAGGTGAAGAAGGTCTGATCTTTGCTTCTAACATGCGAGAGCGTGAAGCCCTGCGTGTAGACCCCAGTCTCAGCCTCATGCCATGGTTCCATGGGAAGATCTCAGGTCCAGAGGCTGTCAGCAAACTGCAGCCGATGGAGGACGGCCTGTTTCTGGTACGCGAGTCCATTCGGCACCCTGGTGACTATGTCCTGTGTGTAAGCTTTAAGCAAGAGGTCCTTCATTACCATGTCATCTACCAGGAATCCAAGCTGACAATTGACAGGACCCAGTACTTCTACAACCTCATTGACATGGTGGAGTTCTACGCCAAGAACAAAGGCATTATTGCTACCACACTGCAGAAACCTAAAGAGAAAGAGGGCACTAAGTCTGCTGCACTGCAGCTCTCAAAAAtGGGCTGGCTATTAGATCTCTCAAAGCTAACTTTGGGAGAAAGTATTGGAAACGGCGAGTTTGGAGCGGTGTTTCAGGGTGAGTACATGGGCAGGAAGGTGGCAGTGAAAAACATAAAGTCTGATGTCACTGCTCAAGCTTTCCTGGACGAGACTTCTGTTATGACAAAACTGCAGCATAGGAATCTGGTGCAGTTATTAGGAGTGATTCTACACAATGGCCTCTACATCATCACAGAATTTATGGCAAAGGGTAATCTGGTGAATTACCTACGATCACGAGGTCGCTCAGTTATAACCACAGCTGAACTCCTGCAATACGCTCTAGATGTGTGTGAAGGCATGGAATATCTGGAGTCAAAGAAACTTGTACACCGGGACCTGGCTGCCCGTAACATCCTCATATCTGAGGACAATATTGCCAAAATCAGTGATTTTGGCCTGGCCATGGTTGACTGTCAGAGCATTGATGTTGCAAAGTTACCTGTGAAATGGACTGCACCTGAGGCCTTAAACAACAAGaagttcTCTACACGGTCAGATATTTGGAGTTACGGTGTGCTTCTATGGGAAACTTTCTCCTTTGGCAGACAGCCCTACCCCAAGATGACTCTGAAGGAGGTGAAGGAGAAAGTGGAGGAGGGATACCGCATGGAGCCGCCTGAAGACTGTCCATCTGAGATCTATGCCATCATGAGGCTCTGCTGGGAGAAGGACCCCAAAATGAGACCGTCATTCCATAAGCTCAAAGAGCATCTACAGGCTGAGCTGAACAAACACGAGTCCCCCACAGAGTCCTGACATCATTTTCTCCATTCGCACATCTGCTTTCTTCATAGCAGACCAGACATTTTATTCACAAATaattacactatactgtattgGACACAGTAACAAGGTTCCTGCTGTAACCTGTTCACCAAGAGTTGACACGGAATATACTCTCTATATGTCActtgctaatttatttttatttatctaacaCTTTATTTCAAAAGGACATTTCACAATGGATGTGTAATCTTCTTAAGTGAGGATACAGACCTCGAAGCAAAAGGCAGCATGAAgctcatatttatgttttgaaAGCTGGCAGAACTGAAAAGACAGTTATAAAATGTTGCTATGGACTGTGGATATATGGAAGGAATATGACCTGTGGCTCAACTCAGAAGATAAAATTAAGCAGCAAACCTTTGTGCTTAATTGAAATTTGTGGAGAAGAATCTCTCTTTAATCAACACATCTTAAGACTCAGTGCTACATTTTGGTCTGCTGAGAACTTTTGTTCTATACTGCATTTTTGAGAATTTTTCAAAGATaatttgtttgtctctctgtcttcagAGGATAAATGTAAACAGCACAAATGCAGGAGGAGAGACGGACTCTTCTGGGGATTAAAATTCAAGATCACGAGTA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K08888 MATK; megakaryocyte-associated tyrosine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214483 lncRNA downstream 216759 14156503 ~ 14203731 (-) True G181207
TU214476 lncRNA downstream 283535 14136454 ~ 14136955 (-) True G181205
TU214468 lncRNA downstream 295567 14080499 ~ 14124923 (-) True G181197
TU214377 lncRNA downstream 364875 14055408 ~ 14055615 (-) True G181128
TU214309 lncRNA downstream 700733 13718323 ~ 13719757 (-) True G181062
TU214582 lncRNA upstream 327 14435301 ~ 14435614 (-) True G181298
TU214672 lncRNA upstream 2427 14437401 ~ 14438034 (-) False zfr2
TU214671 lncRNA upstream 2574 14437548 ~ 14438034 (-) False zfr2
TU214699 lncRNA upstream 46555 14481529 ~ 14483184 (-) True G181401
TU214706 lncRNA upstream 52415 14487389 ~ 14491488 (-) False LOC113532209
XM_026923825.2 mRNA downstream 5421 14410562 ~ 14415069 (-) False rx1
XM_026923817.2 mRNA downstream 5421 14410562 ~ 14415069 (-) True rx1
XM_026919970.2 mRNA downstream 14995 14390531 ~ 14405495 (-) False cherp
XM_026919962.2 mRNA downstream 14995 14390531 ~ 14405495 (-) True cherp
XM_026919979.2 mRNA downstream 14996 14390531 ~ 14405494 (-) False cherp
XM_026917238.2 mRNA upstream 2386 14437360 ~ 14460337 (-) False zfr2
XM_026917180.2 mRNA upstream 2386 14437360 ~ 14460337 (-) False zfr2
XM_026917172.2 mRNA upstream 2386 14437360 ~ 14460337 (-) False zfr2
XM_026917190.2 mRNA upstream 2386 14437360 ~ 14460337 (-) False zfr2
XM_026917207.2 mRNA upstream 2386 14437360 ~ 14460337 (-) True zfr2
XR_004579086.1 other downstream 5421 14408726 ~ 14415069 (-) False rx1
TU214564 other downstream 58843 14360936 ~ 14361647 (-) False LOC113527598
TU214009 other downstream 1177328 13239749 ~ 13243162 (-) False rpp21
trnam-cau_27 other downstream 1184015 13236403 ~ 13236475 (-) True trnam-cau_27
TU213621 other downstream 1700014 12717361 ~ 12720476 (-) True G180485
XR_003402957.2 other upstream 4880 14439854 ~ 14460337 (-) False zfr2
XR_004579061.1 other upstream 118181 14553155 ~ 14579747 (-) False lama3
TU215666 other upstream 1255800 15690774 ~ 15692350 (-) True G182210
TU216001 other upstream 1839908 16274882 ~ 16278809 (-) True micos13
TU216002 other upstream 1840694 16275668 ~ 16278809 (-) False micos13

Expression Profile