tbxa2r (nup160,LOC108271239)


Basic Information

Item Value
gene id tbxa2r
gene name nup160,LOC108271239
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13516683 ~ 13527764 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945905.2
AGCCGCCCGAAATGAGACGCGCTCGACACATTACTGAGAGAATGAGCAGAAACAAGCCACCAAACTAATGCTCTCCTGctgaaggaacatctgtaagTTTTGCAGATCTGGAGTAAGGCCCACAGGATGACCGGATTACCCAACCAAACGGACTAATTTGAAGACGAATCAAATAAAGCAAGCGTGCCACCATGATGCCAGTTCACTCAGACAATGCAAGCAAAGAGGCCTTAAATCAGTCCTTCTGCTTTTCCATTAACAGACCCCCATTCGCAGCCAACCATACCATTGCCTCGGCCTACTTCCCGGCTGTGTTCTGTGTGCTGGGCCTCAGCTCCAACCTGTTCGCCTTTGTGGTTCTGGTCAAGTCCTTCCTGCGAACACGCAGCCGCTCTCGCTCAtcctttcttctcttcctgTGCGGCCTGGTGGTGACTGACTTCATGGGCCTGTTGGTCACTGGAGTCATCGTGGTCTCTTTCCGCGTCACAGGCTTCAGCTGGATGGACCTGGACCCCCACTGTCACTTCTGCAACTTCATGGGCATGTCCATGGTGTTCTATGGCCTGTGCCCTCTCCTTTTGGGTGCCACAATGGCTGTGGAACGATTTGTAGGCATCACTCAGCCCTTCGCCCGTTCCACCAACATGTCAAAGAGCCGagtgtgcaccacagtgaccagCGTGTGGGTGACGGCTGGGTGCATCAGCCTGTTGCCTGTGCTCGGTCTGGGCAGCTACCACCTCCAGAGCCCGGGTTCATGGTGCTTCCTGAACATCAGCCCTATGCCCCTGGATATGGCCTTCTGCCTGGTGTTCTCACTGGTTGGTCTGATGTCTCTGGCCGTGTCTTTCATCCTGAACACGGTGAGCGTGGTCACCTTGCTGAAGGTCTGCTGTGGACAGGACTCCACCCAGCGCCGGAGAGACTACGAGGTGGAGATGATGGTGCAGCTCATCCTTATCATGATCATTGCATCCGTCTGCTGGTATCCACTGCTGGTGTTTATTGCACAGACAGTATTGTCTGCATCAAATCTGCAGGTCCCCACCCTGTTGCTCTACATTCGCTTTGCCACCTGGAACCAGATCCTGGATCCCTGGGTCTACATCCTCTTCCGTCGTTCCATACTGAAGCGGGTCTATCCTCGCATGGACTGGTCTCGTGGCTCCATCATCAGCCTCTACCCATCTTTAGGCACCTCTATCAATCTCACTCGTTCCTCTATAGGGCACCCTCGCAGTCTCAGTCAACAAATCTCAGAAGAACCAAAGCAGGAAGATGCTTTACTATCAACGCGGAGAGTCTCTCCTCCTTCCTGATCAACACTCAGGACCTTCGGTTTAACACTTCAGGAgtcatttatgtttatgtaaagTCTATTTTGGTAAAATTCCCCCgaaatttaataacattatttttaaaaaggttagTTCTTCTTTGgctgaaaaagacaaagaatttGGGTCACATTTGTTAACGTTCCCTTTTCCAGCAGAGACTTTTAATTTAGttccatttaattttatttggataggacttttaacaatagacattgtcacagagcagctttacagaaattcacaTGTAGATCCAGATCCTTGGCAAGGACATaatccctgagatgacatgagaaagaaagcTTGAGAGAGAACCCAGTCTTTCTCAGTGCTTCTACAGAAAAGTGATTTGTGATCTACCTGTGACAAATGCGAGCTAGTTTCCTAACagttaactagccagctagctaggtTAGCCAATGTTAGTGATGAAGAACAAAGAACTGTTTGTTGCCATGAGTATATTTCGACAGGTTTGGCTGTTAAATATATCggtgtgaaaatggagaaatcAAAACTCGATACTGAAACATCACTCATGTCAATCTGTGATAAATGCGAGCTAGTTTTCTGCTAGCTAACACAGCTAATGTTGGTGACAGTCTGCTGGAAACAGCAGAAGGACATTAGGCAGgattctaatttgcatatttgtgtATAGTCATAGTTTCTGGCATTTCAAATGAGACTACAGATATAGAGATGTTCCTAGGCTAATTTAGTATAatatttaatggtttaaaaagcTAAAGTGATGGCAAAAAAGGATGTCGTAAGATACACtacctggccaaaaaaaaaagtcgcacaatctaatattttgttgccctgcatttagctttgattacggcacgcattcgtcctggcattgtttcaacaaccttatgcaa
>XM_026945973.2
AGAGCCCTCACTGCAGCCGCCCGAAATGAGACGCGCTCGACACATTACTGAGAGAATGAGCAGAAACAAGCCACCAAACTAATGCTCTCCTGctgaaggaacatctgtaagTTGTTTATGTAGGATGAAGACCATCATCGGGTCTTCCAGCctacttaaaccagcccatctggcaacaACCCTGCCTCTTTCAAATTTTGCAGATCTGGAGTAAGGCCCACAGGATGACCGGATTACCCAACCAAACGGACTAATTTGAAGACGAATCAAATAAAGCAAGCGTGCCACCATGATGCCAGTTCACTCAGACAATGCAAGCAAAGAGGCCTTAAATCAGTCCTTCTGCTTTTCCATTAACAGACCCCCATTCGCAGCCAACCATACCATTGCCTCGGCCTACTTCCCGGCTGTGTTCTGTGTGCTGGGCCTCAGCTCCAACCTGTTCGCCTTTGTGGTTCTGGTCAAGTCCTTCCTGCGAACACGCAGCCGCTCTCGCTCAtcctttcttctcttcctgTGCGGCCTGGTGGTGACTGACTTCATGGGCCTGTTGGTCACTGGAGTCATCGTGGTCTCTTTCCGCGTCACAGGCTTCAGCTGGATGGACCTGGACCCCCACTGTCACTTCTGCAACTTCATGGGCATGTCCATGGTGTTCTATGGCCTGTGCCCTCTCCTTTTGGGTGCCACAATGGCTGTGGAACGATTTGTAGGCATCACTCAGCCCTTCGCCCGTTCCACCAACATGTCAAAGAGCCGagtgtgcaccacagtgaccagCGTGTGGGTGACGGCTGGGTGCATCAGCCTGTTGCCTGTGCTCGGTCTGGGCAGCTACCACCTCCAGAGCCCGGGTTCATGGTGCTTCCTGAACATCAGCCCTATGCCCCTGGATATGGCCTTCTGCCTGGTGTTCTCACTGGTTGGTCTGATGTCTCTGGCCGTGTCTTTCATCCTGAACACGGTGAGCGTGGTCACCTTGCTGAAGGTCTGCTGTGGACAGGACTCCACCCAGCGCCGGAGAGACTACGAGGTGGAGATGATGGTGCAGCTCATCCTTATCATGATCATTGCATCCGTCTGCTGGTATCCACTGCTGGTGTTTATTGCACAGACAGTATTGTCTGCATCAAATCTGCAGGTCCCCACCCTGTTGCTCTACATTCGCTTTGCCACCTGGAACCAGATCCTGGATCCCTGGGTCTACATCCTCTTCCGTCGTTCCATACTGAAGCGGGTCTATCCTCGCATGGACTGGTCTCGTGGCTCCATCATCAGCCTCTACCCATCTTTAGGCACCTCTATCAATCTCACTCGTTCCTCTATAGGGCACCCTCGCAGTCTCAGTCAACAAATCTCAGAAGAACCAAAGCAGGAAGATGCTTTACTATCAACGCGGAGAGTCTCTCCTCCTTCCTGATCAACACTCAGGACCTTCGGTTTAACACTTCAGGAgtcatttatgtttatgtaaagTCTATTTTGGTAAAATTCCCCCgaaatttaataacattatttttaaaaaggttagTTCTTCTTTGgctgaaaaagacaaagaatttGGGTCACATTTGTTAACGTTCCCTTTTCCAGCAGAGACTTTTAATTTAGttccatttaattttatttggataggacttttaacaatagacattgtcacagagcagctttacagaaattcacaTGTAGATCCAGATCCTTGGCAAGGACATaatccctgagatgacatgagaaagaaagcTTGAGAGAGAACCCAGTCTTTCTCAGTGCTTCTACAGAAAAGTGATTTGTGATCTACCTGTGACAAATGCGAGCTAGTTTCCTAACagttaactagccagctagctaggtTAGCCAATGTTAGTGATGAAGAACAAAGAACTGTTTGTTGCCATGAGTATATTTCGACAGGTTTGGCTGTTAAATATATCggtgtgaaaatggagaaatcAAAACTCGATACTGAAACATCACTCATGTCAATCTGTGATAAATGCGAGCTAGTTTTCTGCTAGCTAACACAGCTAATGTTGGTGACAGTCTGCTGGAAACAGCAGAAGGACATTAGGCAGgattctaatttgcatatttgtgtATAGTCATAGTTTCTGGCATTTCAAATGAGACTACAGATATAGAGATGTTCCTAGGCTAATTTAGTATAatatttaatggtttaaaaagcTAAAGTGATGGCAAAAAAGGATGTCGTAAGATACACtacctggccaaaaaaaaaagtcgcacaatctaatattttgttgccctgcatttagctttgattacggcacgcattcgtcctggcattgtttcaacaaccttatgcaa
>XM_026946043.2
AGCCGCCCGAAATGAGACGCGCTCGACACATTACTGAGAGAATGAGCAGAAACAAGCCACCAAACTAATGCTCTCCTGctgaaggaacatctgtaagTTTTGCAGATCTGGAGTAAGGCCCACAGGATGACCGGATTACCCAACCAAACGGACTAATTTGAAGACGAATCAAATAAAGCAAGCGTGCCACCATGATGCCAGTTCACTCAGACAATGCAAGCAAAGAGGCCTTAAATCAGTCCTTCTGCTTTTCCATTAACAGACCCCCATTCGCAGCCAACCATACCATTGCCTCGGCCTACTTCCCGGCTGTGTTCTGTGTGCTGGGCCTCAGCTCCAACCTGTTCGCCTTTGTGGTTCTGGTCAAGTCCTTCCTGCGAACACGCAGCCGCTCTCGCTCAtcctttcttctcttcctgTGCGGCCTGGTGGTGACTGACTTCATGGGCCTGTTGGTCACTGGAGTCATCGTGGTCTCTTTCCGCGTCACAGGCTTCAGCTGGATGGACCTGGACCCCCACTGTCACTTCTGCAACTTCATGGGCATGTCCATGGTGTTCTATGGCCTGTGCCCTCTCCTTTTGGGTGCCACAATGGCTGTGGAACGATTTGTAGGCATCACTCAGCCCTTCGCCCGTTCCACCAACATGTCAAAGAGCCGagtgtgcaccacagtgaccagCGTGTGGGTGACGGCTGGGTGCATCAGCCTGTTGCCTGTGCTCGGTCTGGGCAGCTACCACCTCCAGAGCCCGGGTTCATGGTGCTTCCTGAACATCAGCCCTATGCCCCTGGATATGGCCTTCTGCCTGGTGTTCTCACTGGTTGGTCTGATGTCTCTGGCCGTGTCTTTCATCCTGAACACGGTGAGCGTGGTCACCTTGCTGAAGGTCTGCTGTGGACAGGACTCCACCCAGCGCCGGAGAGACTACGAGGTGGAGATGATGGTGCAGCTCATCCTTATCATGATCATTGCATCCGTCTGCTGGTATCCACTGCTGATTTACATTCTGAAGACTGTTTTATCCGCTGATGATGTCGACCCCTATTTTGTTCTGTTCTGCCTTCGAATGGCCACCGTCAATCAGATATGCGACCCCTGGATATACATCCTCTGTCAGGAGTCTAGACTAAGGTGTTTATTGCACAGACAGTATTGTCTGCATCAAATCTGCAGGTCCCCACCCTGTTGCTCTACATTCGCTTTGCCACCTGGAACCAGATCCTGGATCCCTGGGTCTACATCCTCTTCCGTCGTTCCATACTGAAGCGGGTCTATCCTCGCATGGACTGGTCTCGTGGCTCCATCATCAGCCTCTACCCATCTTTAGGCACCTCTATCAATCTCACTCGTTCCTCTATAGGGCACCCTCGCAGTCTCAGTCAACAAATCTCAGA

Function

symbol description
nup160 Predicted to be a structural constituent of nuclear pore. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Human ortholog(s) of this gene implicated in nephrotic syndrome type 19. Orthologous to human NUP160 (nucleoporin 160).

NR:

description
PREDICTED: thromboxane A2 receptor-like

GO:

id name namespace
GO:0038193 thromboxane A2 signaling pathway biological_process
GO:0004961 thromboxane A2 receptor activity molecular_function

KEGG:

id description
K04264 TBXA2R; thromboxane A2 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945905.2 False 2230 mRNA 0.47 3 13516683 13527750
XM_026945973.2 True 2328 mRNA 0.47 4 13516683 13527764
XM_026946043.2 False 1398 mRNA 0.53 4 13517649 13527750

Neighbor

gene id symbol gene type direction distance location
si:zfos-943e10.1 LOC108270864,LOC103026993 coding downstream 25509 13470587 ~ 13491174 (-)
lonp1 lonp1,LOC107744642,LOC107679084,LOC107548847 coding downstream 69756 13432083 ~ 13446927 (-)
lmnb2 lmnb2 coding downstream 92261 13405769 ~ 13424422 (-)
ing5a ing5,LOC108424972,LOC105898337 coding downstream 199088 13310779 ~ 13317595 (-)
pigx pigx coding downstream 208366 13303501 ~ 13308317 (-)
kdm4b kdm4b,LOC108271011,LOC107717157,LOC105011321,LOC106574093 coding upstream 569890 14097654 ~ 14160605 (-)
uhrf1 uhrf1 coding upstream 637402 14165166 ~ 14179580 (-)
fbn2b fbn3,fbn2b,LOC108441289,LOC106573567,LOC106613712 coding upstream 713539 14241303 ~ 14317837 (-)
rad23ab LOC108271249,LOC107704496,LOC107717165 coding upstream 834559 14362323 ~ 14374028 (-)
calr3a calr3,calr3a,LOC107702625,LOC107717161,LOC107561598 coding upstream 847721 14375485 ~ 14382765 (-)
G180877 NA non-coding downstream 86510 13426731 ~ 13430173 (-)
G180819 NA non-coding downstream 243741 13251418 ~ 13272942 (-)
G180793 NA non-coding downstream 340663 13094163 ~ 13176020 (-)
G180783 tpm4,tpm1,LOC103156889,LOC106946143,LOC106929302 non-coding downstream 389245 13069936 ~ 13127438 (-)
G180628 NA non-coding downstream 467983 12989773 ~ 13048700 (-)
G181062 NA non-coding upstream 190559 13718323 ~ 13719757 (-)
G181128 NA non-coding upstream 527644 14055408 ~ 14055615 (-)
G181197 NA non-coding upstream 552735 14080499 ~ 14124923 (-)
G181205 NA non-coding upstream 608690 14136454 ~ 14136955 (-)
G181207 NA non-coding upstream 628739 14156503 ~ 14203731 (-)
rpp21 LOC108271386 other downstream 273483 13239723 ~ 13243200 (-)
rc3h1a rc3h1,LOC108429496 other downstream 734148 12752078 ~ 12782535 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 796207 12717361 ~ 12720476 (-)
ncln ncln other downstream 1484677 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 1627534 11862989 ~ 11889149 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 19150 13546914 ~ 13783127 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 830756 14358520 ~ 14361647 (-)
rx1 LOC108270609 other upstream 880962 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 909596 14437360 ~ 14460337 (-)
LOC113532209 LOC108271183 other upstream 959356 14487120 ~ 14493859 (-)

Expression


Co-expression Network