G180819


Basic Information

Item Value
gene id G180819
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13251418 ~ 13272942 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU214014
TGATCTCACaacatgcttttctgagataccTTGTAAACTCTTGTGTGCGAACTCAAGCCAACCCATCTGATGCCatcatccatgccacaatcaaagtcacagagatcacattttttcttcattctgatgtttgatgtcaacattaactgaagctcttgacctgtatcggTACGTTTTGGTTTGGATTTTTTCCCATTACGCTGCTGCCCCATGATttactgattggataactgcatgaatgtacgggtgttgctaataaagtggacggtgagtgtatgttctgtattatgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214014 True 292 lncRNA 0.40 2 13251418 13272942

Neighbor

gene id symbol gene type direction distance location
trnam-cau_27 NA coding downstream 14943 13236403 ~ 13236475 (-)
gpc5b LOC108270519 coding downstream 20295 13158387 ~ 13231123 (-)
gpc1a gpc1,LOC108424978 coding downstream 95400 13111812 ~ 13156018 (-)
lpl lpl,LOC108271131,LOC107588078,LOC107665505,LOC107561902,LOC107715086 coding downstream 204570 13037990 ~ 13046848 (-)
LOC113536692 NA coding downstream 218874 13024401 ~ 13032544 (-)
pak2b pak2,LOC107741800,LOC107678112,LOC107679089 coding upstream 13690 13286632 ~ 13302366 (-)
pigx pigx coding upstream 30559 13303501 ~ 13308317 (-)
ing5a ing5,LOC108424972,LOC105898337 coding upstream 37837 13310779 ~ 13317595 (-)
lmnb2 lmnb2 coding upstream 132827 13405769 ~ 13424422 (-)
lonp1 lonp1,LOC107744642,LOC107679084,LOC107548847 coding upstream 159141 13432083 ~ 13446927 (-)
G180793 NA non-coding downstream 75398 13094163 ~ 13176020 (-)
G180783 tpm4,tpm1,LOC103156889,LOC106946143,LOC106929302 non-coding downstream 123980 13069936 ~ 13127438 (-)
G180628 NA non-coding downstream 202718 12989773 ~ 13048700 (-)
G180627 NA non-coding downstream 263895 12986787 ~ 12987523 (-)
G180629 safb2 non-coding downstream 267305 12982012 ~ 12984113 (-)
G180877 NA non-coding upstream 153789 13426731 ~ 13430173 (-)
G181047 NA non-coding upstream 237509 13510451 ~ 13521721 (-)
G181062 NA non-coding upstream 445381 13718323 ~ 13719757 (-)
G181128 NA non-coding upstream 782466 14055408 ~ 14055615 (-)
G181197 NA non-coding upstream 807557 14080499 ~ 14124923 (-)
rpp21 LOC108271386 other downstream 8218 13239723 ~ 13243200 (-)
rc3h1a rc3h1,LOC108429496 other downstream 468883 12752078 ~ 12782535 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 530942 12717361 ~ 12720476 (-)
ncln ncln other downstream 1219412 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 1362269 11862989 ~ 11889149 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 273972 13546914 ~ 13783127 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 1085578 14358520 ~ 14361647 (-)
rx1 LOC108270609 other upstream 1135784 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 1164418 14437360 ~ 14460337 (-)
LOC113532209 LOC108271183 other upstream 1214178 14487120 ~ 14493859 (-)

Expression


Co-expression Network