pak2b (pak2,LOC107741800,LOC107678112,LOC107679089)


Basic Information

Item Value
gene id pak2b
gene name pak2,LOC107741800,LOC107678112,LOC107679089
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13286632 ~ 13302366 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924707.2
CGCTTTGTGTTAATACGGGTGGGGAGAACTGAACACAAGGCTGTCTGTATGGAAGGGTTGGGGCAGGTAGGAGCCGAGACTCGGGGAGAAAAGTCTGTGTTAAACCGCCTCCCCGTCGCTCGCCTTGCGCCGAAATACCACAAAGAGTGAAAAGTCGCTAGTTAGCTCGATGTTCCGAGTATAAAGTTGACGTCGGGAATTTTCCTTGACCGTcagttttttgtatttgtagaTTTTGCTCCTAAACGAGTGCAGAATCTGGTTTTGGTGGAGAAGAAGTGAGGAGCTGCTTCAGGTCTGGATTGCCTACTAGCCAAGTTTCGTGGAAGTTTGCAGAGTGGGGCTGCACAGTTCTAATTCCTCTGGTTCTTATCTGCTCCTGCATTTCTCTCCCCCTTCCAAAATCTGATTCGGTCCATCCCtcccctctttttttcttttccttgctGTTTTACTTTTCCTCTTGAACCATGTGTGATAACATGGACCATGAGGACAAGCCACCTGCCCCACCTGTGAGGATGAGTAGCACGATCTTCAGTGGTGATGGGAAAGACTACACGCTGCTGGCCAATCACAGCTCCAAGCCCTTACCGTCCGTGCCTGAAGAGAGGAAACCTCGCAGCAAAATCATCTCCATCTTTTCAGGGGCagagaaagGTGGAAGACGGAAAGACAGGGACAGGGAGCGGCCGGAAATCTCTTCTCCTTCAGGTTTCGAGCACACCATCCATGTGGGCTTTGATGCTGTGACTGGGGAGTTCACGGGAATGCCAGAACAGTGGGCACGATTACTGCAGACCTCCAACATCACCAAGTCCGAACAGAAGAAAAACCCTCAAGCTGTGCTAGATGTCCTCAAGTTCTATGACTCCACAGGAAACACAGGCAGGCAGAAGTACCTCAGCTTCTCTTCAGAGAAGGATGGATTTCCTTCGGCTGATCATTCGCCTGTTAAAAAGAGCACAGAACAGCCATCACCAAACATCAAgaatgttgatgatgatgaagatgacgaGGAGACACCTCCCCCTGTTGTAGCGCCGCGGCCAGAACACACGAAGGGGgTGAACACTCGGTCAGTTATTGATCCCATCCCTGCACCAGTCTCTCCAGATGGGGATGTTGCATCCAAAGCTGCAGACAAACAAAGACCCAAAAAGGGCAAGATGTCTGATGAGGAGATCATGGACAAATTGAGAACCATAGTCAGTATTGGAGATCCTAAAAAGAAGTACACACGATACGAGAAGATTGGACAAGGAGCTTCAGGAACAGTGTTCACGGCCATCGATGTTGCTACTGGgcaagagGTGGCCATCAAGCAGATCAAcctgcaaaagcaacccaagaagGAGCTAATTATCAATGAAATTCTTGTTATGAAGGAACTGAAGAACCCTAACATTGTCAACTTCTTAGACAGtTTTCTAGTAGGGGAAGAGCTCTTTGTGGTGATGGAGTACCTGGCTGGTGGCTCACTGACTGACGTAGTGACAGAGACGTGTATGGATGAAGCTCAGATCGCTGCTGTTTGCAGAGAGtgtttacaaGCACTAGAATTCCTTCACGCCAACCAGGTCATTCATCGAGACATCAAGAGTGACAATGTTCTGCTCGGAATGGACGGCTCTGTTAAACTTACCGATTTCGGTTTCTGTGCCCAAATCACACCAGAGCAGAGCAAGAGGAGCACAATGGTCGGCACTCCATACTGGATGGCCCCCGAGGTTGTTACCCGCAAAGCTTATGGGCCCAAAGTGGACATCTGGTCTCTTGGCATCATGGCTATTGAGATGGTGGAAGGAGAGCCTCCATACCTTAATGAGAATCCACTGAGGGCACTTTACCTCATTGCTACTAATGGAACACCAGAGTTGCAGAGTCCAGAGAAACTGTCACCCATTTTTCGGGATTTCTTAGCTCGCTGTCTGGAAATGGATGTAGAAAAGAGGGGCAGCAGTAAAGACCTTTTACAGCATCCTTTCCTGAAGTTGGCGAAGCCTCTGTCCAGTCTCACGCCGCTCATTCTGGCTGCCAAGGACGCCATGAAGAACAACCGCTAACGTCCTCACTGGACGAGCCATGCTGAGAAACCCAGCGCGCTGAACGGACTCCGACTCCTGTGCCACGTCTCTTACCGCTGTGCCTCCTGGCCAGCTAGTATTGCCAAAACAACGTTTCTACAAGCATTTCAACAGCGCTTTTTAAACTGGTGGGACTCTTCTTGGGTGTGGGCCGGGGAGGGCTGCGGCATCTAAAATGTTCTCATCTGTTTTCCTGTAGCCTTTTTCCATACTGTTTTATGCTGCACGTCATTTCATCAGTTTTTTCATGTCCATTCTTCTCTTATGACTATTATGTGCAGGAGATTTATGTCTTTAAGGGTTGAAGTATTTAAAGTGTCCTTGAGCTGTTTGTtagtaatttcatttttatagaaagattaatgagctaaaaaaaaaaaaaaacttttttctcatttttcttaaaaatgtagCTGGGATGAGTAAAACCAGCATTATCAGTGGGCGTTTGGTTTGTTACCTGGTGTCATTTCCTCTTCAAGCATGAACTGATGTAAGAATGGACCAGTTTCTGGAGCTCTATAACAACATGTAAACATTCATGACACAGATGGCATATGTTGTGTACTTTAAAGAACTATAATAACTGGTCCACCAAGAATTTCAGACTACATGTTTGTATAAATGAGTGTTTTTGTAGTAA

Function

symbol description
pak2 Enables several functions, including enzyme binding activity; identical protein binding activity; and protein tyrosine kinase activator activity. Involved in several processes, including cell-cell junction assembly; negative regulation of stress fiber assembly; and regulation of apoptotic process. Acts upstream of or within protein autophosphorylation. Located in cell-cell junction and cytosol. Implicated in ductal carcinoma in situ.

NR:

description
serine/threonine-protein kinase PAK 2

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0006950 response to stress biological_process
GO:0000910 cytokinesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0001568 blood vessel development biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0007409 axonogenesis biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function

KEGG:

id description
K04410 PAK2; p21-activated kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924707.2 True 2730 mRNA 0.47 15 13286632 13302366

Neighbor

gene id symbol gene type direction distance location
trnam-cau_27 NA coding downstream 50157 13236403 ~ 13236475 (-)
gpc5b LOC108270519 coding downstream 55509 13158387 ~ 13231123 (-)
gpc1a gpc1,LOC108424978 coding downstream 130614 13111812 ~ 13156018 (-)
lpl lpl,LOC108271131,LOC107588078,LOC107665505,LOC107561902,LOC107715086 coding downstream 239784 13037990 ~ 13046848 (-)
LOC113536692 NA coding downstream 254088 13024401 ~ 13032544 (-)
pigx pigx coding upstream 1135 13303501 ~ 13308317 (-)
ing5a ing5,LOC108424972,LOC105898337 coding upstream 8413 13310779 ~ 13317595 (-)
lmnb2 lmnb2 coding upstream 103403 13405769 ~ 13424422 (-)
lonp1 lonp1,LOC107744642,LOC107679084,LOC107548847 coding upstream 129717 13432083 ~ 13446927 (-)
si:zfos-943e10.1 LOC108270864,LOC103026993 coding upstream 168221 13470587 ~ 13491174 (-)
G180819 NA non-coding downstream 13690 13251418 ~ 13272942 (-)
G180793 NA non-coding downstream 110612 13094163 ~ 13176020 (-)
G180783 tpm4,tpm1,LOC103156889,LOC106946143,LOC106929302 non-coding downstream 159194 13069936 ~ 13127438 (-)
G180628 NA non-coding downstream 237932 12989773 ~ 13048700 (-)
G180627 NA non-coding downstream 299109 12986787 ~ 12987523 (-)
G180877 NA non-coding upstream 124365 13426731 ~ 13430173 (-)
G181047 NA non-coding upstream 208085 13510451 ~ 13521721 (-)
G181062 NA non-coding upstream 415957 13718323 ~ 13719757 (-)
G181128 NA non-coding upstream 753042 14055408 ~ 14055615 (-)
G181197 NA non-coding upstream 778133 14080499 ~ 14124923 (-)
rpp21 LOC108271386 other downstream 43432 13239723 ~ 13243200 (-)
rc3h1a rc3h1,LOC108429496 other downstream 504097 12752078 ~ 12782535 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 566156 12717361 ~ 12720476 (-)
ncln ncln other downstream 1254626 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 1397483 11862989 ~ 11889149 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 244548 13546914 ~ 13783127 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 1056154 14358520 ~ 14361647 (-)
rx1 LOC108270609 other upstream 1106360 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 1134994 14437360 ~ 14460337 (-)
LOC113532209 LOC108271183 other upstream 1184754 14487120 ~ 14493859 (-)

Expression


Co-expression Network