lmnb2 (lmnb2)


Basic Information

Item Value
gene id lmnb2
gene name lmnb2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13405769 ~ 13424422 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942133.2
AACGTTAAGAAGAACTACAACTGCGATatggttgtaaaaaaaaactacaactcCCAGTATCATTTCCTTATTCCGGCAGCTTTTGGCGGGTTTTTACGTTAGTGTCGGCCATTTTGTTTTAACAATTCTTTCAAAGCTAGCCAACCAGCTACGGGCTCAAACACGAACAATTGTGCCAGACTTTTCATTCAAAACGTCAGTGAGTAATTCCGGAAGGTAGTATATTTTACGTTCGGATTTACTTTACAAAATTCACCGGTTTGTTCTGAAACGGGACTGAAAGAGAACCgcttgggaggaaaaaaaaagcacaaataagTTGCTGTCTCTCGCGTGAAGATATGGCGACCGCAACCCCAAGCCGCTCTGCCGCCGAATCCGGCCGGGCGACTGCTGCTTCGACGCCGCTCTCCCCGACCCGCATCTCCCGCTTACAGGAGAAGGAGGAACTGCGGCACCTGAATGACAGACTGGCCGTGTATATCGACCGCGTCCGCTCTTTGGAGCTGGAGAACGACAGGCTCTCGCTGAAGGTCTCGGAGAAGGAGGAGGTCACAACAAGAGAGGTCACCGGGATTAAGTCTCTGTATGAGGCAGAACTGGCGGATGCCAGACGTGTTCTTGACGAGACTgcgagagagaaagcaaaactCCAGATCGATCTGGGCAAGGTCAGCTCTGAGCTTGAGGAGGTCAATAAGAACTATAAGAAGAGGGGTGGTGACCTGGCATCGGCTCAGGCCCGGATCAAGGAGCTGGAGTCTCAGTATAACCAGAGTGAAGCGTCACTCACTACAGCTCTCAGCGAGAATGCTGCGCTCTCTGCAGAGATCGCTGACCTGAAGAACCAGCTCTCTAAGGCTGAGGATGCTCATGCCGTGGCTAAGAAGCAGCTGGAGTCCGAGACACTGATGCGAGTGGATGTGGAGAACCGCTGCCAAAGCCTGACTGAGGAACTTGAATTTAGGAAGAACATGTTTGAGGAGGAGGTGCGTGATACGAGGAAGCGCCACGAGAAGCGGATGGTGGAGGTGGACACTGGAGCTAAGCAGGACTATGAATACAAACTGGCCCAGGCTCTGCAGGACCTCCGCAAGGAGCACGAGGAGCAAGTCAGCCTCTATAAGACTGAGCTCGAGCAAACCTTCCAGGCTAAGCTGGACAATGCCAAGGTGTCCTCTGACCTCAATGATAAGGCAGTGAGCACAGCACGGGAGGAGCTGCAGGAGGCTCGTGTCAGGATTGAGGGGCTGACCTATCAGCTCTCTGCACTCCAGAAACAGGCAGCAACAGTGGAGGAGCGTGTGCGTGAGCTGGAAGACTTGCTGAACAGCGAGCGTGATAAACACCGCAGAACAATGGACGGCAAGGAACGCGAGATGGCCGAGATGAGGGACCGCATGCAGCTGCAGCTCAACGAGTATCAGGAGCTGCTGGATGTAAAGCTGGCCTTGGACATGGAAATCAATGCCTACAGGAAGCTGCTGGAGGGAGAAGAGGACAGGCTGAAGCTGTCCCCCAGCCCCCCCTCACGGGTCACTGTTTCCCGAAGCGTTGCTGCTAGCAGCAGCTCCTCCCGCTCATCCCGTGCTAAGAGGAAGCGTGTGGAGGTGGAAGATGAGACGCCCAGTGCTCCCAGTTTTCATATCACCCAGCATGCTGAGGCAACAGGCTCAATCAGTATTGAGGAGCTTGACCTCGAGGGCAAGAGTGTCACCCTCAAAAATAACTCCAATAAGGATCAGTCTCTGGGTAGCTGGCGGCTAAAGAGGCGAGTTGGAGAGGGAGATGAGATTGCCTACAAATTCAGCCCTAAGTTTGCTCTTAAAGCAGGACAGACTGTTACAGTGTGGGCTGCAGATGCAGGCGTGGCTCACAGTCCTCCCTCAGACCTGCTGTGGAAGAGTCAGAGCAGCTGGGGCAGCGGAGATGAAACAGTCACCCTGCTGATCAATTCAGATGGAGAGGAGGTGGCAAAGCGAATGGTCACCAAAAGCGTGCTAGAGATGGAAAATGGAGATGACGAGAATGGAGATTTTGGAAATGAGGATCTGTTCCACCAGCAGGGCGATCCAAAGATCAGATCCAGAGAATGTGCCGTCATGTGAGAGAGCTTCATTCACCACAGTATTTCCCCCTGATTGTTCCCTCAGAGCCACAaattttttgtattcttcaaTCATGAATCCTTAAAATCCCCCCCCCCCGCCAGAATGTCACTGGCATACAGTTTTTACGGACCTCGTTTTTAAAGCCAGGTAACCTTGAACTGTGTatcaaagaattttttttaattgcagtctatcagaatgtttttctttttttgtctttttgataAGCATCAAATGGAAGTTGGACAGCTTCCGAACACCAGCCTCACCTCCATGTAACAGAGGTCTGCACAATATAACAGCAGGAAATGACttgatgtatttaaaaaaaaaaaaaaaaaaaatg

Function

symbol description
lmnb2 Located in nuclear envelope. Human ortholog(s) of this gene implicated in partial lipodystrophy; primary autosomal recessive microcephaly; and progressive myoclonus epilepsy 9. Orthologous to human LMNB2 (lamin B2).

NR:

description
lamin-B2

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07611 LMNB; lamin B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942133.2 True 2457 mRNA 0.51 12 13405769 13424422

Neighbor

gene id symbol gene type direction distance location
ing5a ing5,LOC108424972,LOC105898337 coding downstream 88174 13310779 ~ 13317595 (-)
pigx pigx coding downstream 97452 13303501 ~ 13308317 (-)
pak2b pak2,LOC107741800,LOC107678112,LOC107679089 coding downstream 103403 13286632 ~ 13302366 (-)
trnam-cau_27 NA coding downstream 169294 13236403 ~ 13236475 (-)
gpc5b LOC108270519 coding downstream 174646 13158387 ~ 13231123 (-)
lonp1 lonp1,LOC107744642,LOC107679084,LOC107548847 coding upstream 7661 13432083 ~ 13446927 (-)
si:zfos-943e10.1 LOC108270864,LOC103026993 coding upstream 46165 13470587 ~ 13491174 (-)
tbxa2r nup160,LOC108271239 coding upstream 92261 13516683 ~ 13527764 (-)
kdm4b kdm4b,LOC108271011,LOC107717157,LOC105011321,LOC106574093 coding upstream 673232 14097654 ~ 14160605 (-)
uhrf1 uhrf1 coding upstream 740744 14165166 ~ 14179580 (-)
G180819 NA non-coding downstream 132827 13251418 ~ 13272942 (-)
G180793 NA non-coding downstream 229749 13094163 ~ 13176020 (-)
G180783 tpm4,tpm1,LOC103156889,LOC106946143,LOC106929302 non-coding downstream 278331 13069936 ~ 13127438 (-)
G180628 NA non-coding downstream 357069 12989773 ~ 13048700 (-)
G180627 NA non-coding downstream 418246 12986787 ~ 12987523 (-)
G180877 NA non-coding upstream 2309 13426731 ~ 13430173 (-)
G181047 NA non-coding upstream 86029 13510451 ~ 13521721 (-)
G181062 NA non-coding upstream 293901 13718323 ~ 13719757 (-)
G181128 NA non-coding upstream 630986 14055408 ~ 14055615 (-)
G181197 NA non-coding upstream 656077 14080499 ~ 14124923 (-)
rpp21 LOC108271386 other downstream 162569 13239723 ~ 13243200 (-)
rc3h1a rc3h1,LOC108429496 other downstream 623234 12752078 ~ 12782535 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 685293 12717361 ~ 12720476 (-)
ncln ncln other downstream 1373763 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 1516620 11862989 ~ 11889149 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 122492 13546914 ~ 13783127 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 934098 14358520 ~ 14361647 (-)
rx1 LOC108270609 other upstream 984304 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 1012938 14437360 ~ 14460337 (-)
LOC113532209 LOC108271183 other upstream 1062698 14487120 ~ 14493859 (-)

Expression


Co-expression Network