RNA id: XM_026924707.2


Basic Information

Item Value
RNA id XM_026924707.2
length 2730
RNA type mRNA
GC content 0.47
exon number 15
gene id pak2b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13286632 ~ 13302366 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTTTGTGTTAATACGGGTGGGGAGAACTGAACACAAGGCTGTCTGTATGGAAGGGTTGGGGCAGGTAGGAGCCGAGACTCGGGGAGAAAAGTCTGTGTTAAACCGCCTCCCCGTCGCTCGCCTTGCGCCGAAATACCACAAAGAGTGAAAAGTCGCTAGTTAGCTCGATGTTCCGAGTATAAAGTTGACGTCGGGAATTTTCCTTGACCGTcagttttttgtatttgtagaTTTTGCTCCTAAACGAGTGCAGAATCTGGTTTTGGTGGAGAAGAAGTGAGGAGCTGCTTCAGGTCTGGATTGCCTACTAGCCAAGTTTCGTGGAAGTTTGCAGAGTGGGGCTGCACAGTTCTAATTCCTCTGGTTCTTATCTGCTCCTGCATTTCTCTCCCCCTTCCAAAATCTGATTCGGTCCATCCCtcccctctttttttcttttccttgctGTTTTACTTTTCCTCTTGAACCATGTGTGATAACATGGACCATGAGGACAAGCCACCTGCCCCACCTGTGAGGATGAGTAGCACGATCTTCAGTGGTGATGGGAAAGACTACACGCTGCTGGCCAATCACAGCTCCAAGCCCTTACCGTCCGTGCCTGAAGAGAGGAAACCTCGCAGCAAAATCATCTCCATCTTTTCAGGGGCagagaaagGTGGAAGACGGAAAGACAGGGACAGGGAGCGGCCGGAAATCTCTTCTCCTTCAGGTTTCGAGCACACCATCCATGTGGGCTTTGATGCTGTGACTGGGGAGTTCACGGGAATGCCAGAACAGTGGGCACGATTACTGCAGACCTCCAACATCACCAAGTCCGAACAGAAGAAAAACCCTCAAGCTGTGCTAGATGTCCTCAAGTTCTATGACTCCACAGGAAACACAGGCAGGCAGAAGTACCTCAGCTTCTCTTCAGAGAAGGATGGATTTCCTTCGGCTGATCATTCGCCTGTTAAAAAGAGCACAGAACAGCCATCACCAAACATCAAgaatgttgatgatgatgaagatgacgaGGAGACACCTCCCCCTGTTGTAGCGCCGCGGCCAGAACACACGAAGGGGgTGAACACTCGGTCAGTTATTGATCCCATCCCTGCACCAGTCTCTCCAGATGGGGATGTTGCATCCAAAGCTGCAGACAAACAAAGACCCAAAAAGGGCAAGATGTCTGATGAGGAGATCATGGACAAATTGAGAACCATAGTCAGTATTGGAGATCCTAAAAAGAAGTACACACGATACGAGAAGATTGGACAAGGAGCTTCAGGAACAGTGTTCACGGCCATCGATGTTGCTACTGGgcaagagGTGGCCATCAAGCAGATCAAcctgcaaaagcaacccaagaagGAGCTAATTATCAATGAAATTCTTGTTATGAAGGAACTGAAGAACCCTAACATTGTCAACTTCTTAGACAGtTTTCTAGTAGGGGAAGAGCTCTTTGTGGTGATGGAGTACCTGGCTGGTGGCTCACTGACTGACGTAGTGACAGAGACGTGTATGGATGAAGCTCAGATCGCTGCTGTTTGCAGAGAGtgtttacaaGCACTAGAATTCCTTCACGCCAACCAGGTCATTCATCGAGACATCAAGAGTGACAATGTTCTGCTCGGAATGGACGGCTCTGTTAAACTTACCGATTTCGGTTTCTGTGCCCAAATCACACCAGAGCAGAGCAAGAGGAGCACAATGGTCGGCACTCCATACTGGATGGCCCCCGAGGTTGTTACCCGCAAAGCTTATGGGCCCAAAGTGGACATCTGGTCTCTTGGCATCATGGCTATTGAGATGGTGGAAGGAGAGCCTCCATACCTTAATGAGAATCCACTGAGGGCACTTTACCTCATTGCTACTAATGGAACACCAGAGTTGCAGAGTCCAGAGAAACTGTCACCCATTTTTCGGGATTTCTTAGCTCGCTGTCTGGAAATGGATGTAGAAAAGAGGGGCAGCAGTAAAGACCTTTTACAGCATCCTTTCCTGAAGTTGGCGAAGCCTCTGTCCAGTCTCACGCCGCTCATTCTGGCTGCCAAGGACGCCATGAAGAACAACCGCTAACGTCCTCACTGGACGAGCCATGCTGAGAAACCCAGCGCGCTGAACGGACTCCGACTCCTGTGCCACGTCTCTTACCGCTGTGCCTCCTGGCCAGCTAGTATTGCCAAAACAACGTTTCTACAAGCATTTCAACAGCGCTTTTTAAACTGGTGGGACTCTTCTTGGGTGTGGGCCGGGGAGGGCTGCGGCATCTAAAATGTTCTCATCTGTTTTCCTGTAGCCTTTTTCCATACTGTTTTATGCTGCACGTCATTTCATCAGTTTTTTCATGTCCATTCTTCTCTTATGACTATTATGTGCAGGAGATTTATGTCTTTAAGGGTTGAAGTATTTAAAGTGTCCTTGAGCTGTTTGTtagtaatttcatttttatagaaagattaatgagctaaaaaaaaaaaaaaacttttttctcatttttcttaaaaatgtagCTGGGATGAGTAAAACCAGCATTATCAGTGGGCGTTTGGTTTGTTACCTGGTGTCATTTCCTCTTCAAGCATGAACTGATGTAAGAATGGACCAGTTTCTGGAGCTCTATAACAACATGTAAACATTCATGACACAGATGGCATATGTTGTGTACTTTAAAGAACTATAATAACTGGTCCACCAAGAATTTCAGACTACATGTTTGTATAAATGAGTGTTTTTGTAGTAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0006950 response to stress biological_process
GO:0000910 cytokinesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0001568 blood vessel development biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0007409 axonogenesis biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function

KEGG:

id description
K04410 PAK2; p21-activated kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214014 lncRNA downstream 13690 13251418 ~ 13272942 (-) True G180819
TU213983 lncRNA downstream 110612 13094163 ~ 13176020 (-) True G180793
TU213972 lncRNA downstream 159194 13069936 ~ 13127438 (-) True G180783
TU213800 lncRNA downstream 237932 12989773 ~ 13048700 (-) True G180628
TU213798 lncRNA downstream 299109 12986787 ~ 12987523 (-) True G180627
TU214092 lncRNA upstream 124365 13426731 ~ 13430173 (-) True G180877
TU214294 lncRNA upstream 208085 13510451 ~ 13521721 (-) True G181047
TU214285 lncRNA upstream 244590 13546956 ~ 13570169 (-) False ptprsa
TU214309 lncRNA upstream 415957 13718323 ~ 13719757 (-) True G181062
TU214377 lncRNA upstream 753042 14055408 ~ 14055615 (-) True G181128
XM_034308980.1 mRNA downstream 43432 13239723 ~ 13243200 (-) True rpp21
XM_026930328.2 mRNA downstream 55509 13158387 ~ 13231123 (-) True gpc5b
XM_034308427.1 mRNA downstream 55509 13172729 ~ 13231123 (-) False gpc5b
XM_026930600.2 mRNA downstream 130614 13111812 ~ 13156018 (-) True gpc1a
XM_034308865.1 mRNA downstream 239784 13041002 ~ 13046848 (-) False lpl
XM_026947751.2 mRNA upstream 1135 13303501 ~ 13308317 (-) True pigx
XM_026927657.2 mRNA upstream 8413 13310779 ~ 13317595 (-) False ing5a
XM_026927665.2 mRNA upstream 8413 13310779 ~ 13317419 (-) True ing5a
XM_026942133.2 mRNA upstream 103403 13405769 ~ 13424422 (-) True lmnb2
XM_026942022.2 mRNA upstream 129717 13432083 ~ 13446927 (-) True lonp1
TU214009 other downstream 43470 13239749 ~ 13243162 (-) False rpp21
trnam-cau_27 other downstream 50157 13236403 ~ 13236475 (-) True trnam-cau_27
TU213621 other downstream 566156 12717361 ~ 12720476 (-) True G180485
TU212758 other downstream 1782670 11496074 ~ 11503962 (-) False LOC117598430
TU212749 other downstream 1871192 11409092 ~ 11415440 (-) False G179803
TU214564 other upstream 1058570 14360936 ~ 14361647 (-) False LOC113527598
XR_004579086.1 other upstream 1106360 14408726 ~ 14415069 (-) False rx1
XR_003402957.2 other upstream 1137488 14439854 ~ 14460337 (-) False zfr2
XR_004579061.1 other upstream 1250789 14553155 ~ 14579747 (-) False lama3
TU215666 other upstream 2388408 15690774 ~ 15692350 (-) True G182210

Expression Profile