Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034308980.1 |
| length | 1068 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 5 |
| gene id | rpp21 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 13239723 ~ 13243200 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0001682 | tRNA 5'-leader removal | biological_process |
| GO:0004526 | ribonuclease P activity | molecular_function |
| id | description |
|---|---|
| K03540 | RPR2, RPP21; ribonuclease P protein subunit RPR2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU213983 | lncRNA | downstream | 63703 | 13094163 ~ 13176020 (-) | True | G180793 |
| TU213972 | lncRNA | downstream | 112285 | 13069936 ~ 13127438 (-) | True | G180783 |
| TU213800 | lncRNA | downstream | 191023 | 12989773 ~ 13048700 (-) | True | G180628 |
| TU213798 | lncRNA | downstream | 252200 | 12986787 ~ 12987523 (-) | True | G180627 |
| TU213802 | lncRNA | downstream | 255610 | 12982012 ~ 12984113 (-) | True | G180629 |
| TU214014 | lncRNA | upstream | 8218 | 13251418 ~ 13272942 (-) | True | G180819 |
| TU214092 | lncRNA | upstream | 183531 | 13426731 ~ 13430173 (-) | True | G180877 |
| TU214294 | lncRNA | upstream | 267251 | 13510451 ~ 13521721 (-) | True | G181047 |
| TU214285 | lncRNA | upstream | 303756 | 13546956 ~ 13570169 (-) | False | ptprsa |
| TU214309 | lncRNA | upstream | 475123 | 13718323 ~ 13719757 (-) | True | G181062 |
| XM_026930328.2 | mRNA | downstream | 8600 | 13158387 ~ 13231123 (-) | True | gpc5b |
| XM_034308427.1 | mRNA | downstream | 8600 | 13172729 ~ 13231123 (-) | False | gpc5b |
| XM_026930600.2 | mRNA | downstream | 83705 | 13111812 ~ 13156018 (-) | True | gpc1a |
| XM_026930682.2 | mRNA | downstream | 192875 | 13037990 ~ 13046848 (-) | False | lpl |
| XM_034308865.1 | mRNA | downstream | 192875 | 13041002 ~ 13046848 (-) | False | lpl |
| XM_026924707.2 | mRNA | upstream | 43432 | 13286632 ~ 13302366 (-) | True | pak2b |
| XM_026947751.2 | mRNA | upstream | 60301 | 13303501 ~ 13308317 (-) | True | pigx |
| XM_026927657.2 | mRNA | upstream | 67579 | 13310779 ~ 13317595 (-) | False | ing5a |
| XM_026927665.2 | mRNA | upstream | 67579 | 13310779 ~ 13317419 (-) | True | ing5a |
| XM_026942133.2 | mRNA | upstream | 162569 | 13405769 ~ 13424422 (-) | True | lmnb2 |
| trnam-cau_27 | other | downstream | 3248 | 13236403 ~ 13236475 (-) | True | trnam-cau_27 |
| TU213621 | other | downstream | 519247 | 12717361 ~ 12720476 (-) | True | G180485 |
| TU212758 | other | downstream | 1735761 | 11496074 ~ 11503962 (-) | False | LOC117598430 |
| TU212749 | other | downstream | 1824283 | 11409092 ~ 11415440 (-) | False | G179803 |
| TU212647 | other | downstream | 1993418 | 11243975 ~ 11246305 (-) | False | nppc |
| TU214564 | other | upstream | 1117736 | 14360936 ~ 14361647 (-) | False | LOC113527598 |
| XR_004579086.1 | other | upstream | 1165526 | 14408726 ~ 14415069 (-) | False | rx1 |
| XR_003402957.2 | other | upstream | 1196654 | 14439854 ~ 14460337 (-) | False | zfr2 |
| XR_004579061.1 | other | upstream | 1309955 | 14553155 ~ 14579747 (-) | False | lama3 |
| TU215666 | other | upstream | 2447574 | 15690774 ~ 15692350 (-) | True | G182210 |
