RNA id: XM_026927657.2


Basic Information

Item Value
RNA id XM_026927657.2
length 2059
RNA type mRNA
GC content 0.39
exon number 8
gene id ing5a
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13310779 ~ 13317595 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGTATACCAATGTTGTTCTACTTCATGCGCGCTGGcgctgacagaaaaaaaaaacaagctacatttttaacTTGAAGGTTGATGATAATGGCGACGGCGATATACCTCGAACACTATCTTGACAGCATTGAAAATTTGCCATGTGAACTACAGAGGAACTTCACCCTGATGCGGGAGCTGGACAACAGGACAGAGGAAAAGAAGGGAGAGATCGATAAACTCGCCGAAGAGTACATCACAAACGTCCGGAACCTTGCGTCTGAGCAGAGGGTGGAACATCTGCAGAAGATTCAGAGCGCCTATAGCAAATGTAAAGAATATAGTGATGACAAAGTGCAGCTTGCCATGCAGACATATGAAATGGTTGACAAGCACATCCGAAGGCTGGATGCAGACCTGGCCCGCTTTGAGAATGAGCTAAAAGAGAAGCTGGATGTCAGTGGTTATGAGAGCCCTGAGAGTAGAGCACTAAAAAaaggaGGAGGCAGAGGGTTTAAGGATAAGCGAGGATCTAAAGGCAGAGGAAGAAAATGCTCAGATGATGACTCACCgcgaaagaaaaaaatgaaaaacagTCCTGATTTCCAGGAGTCCCTGCTGCCGGTGCACCCATCAGATGTCCTGGACATGCCAGTGGACCCCAATGAGCCCACATACTGTTTGTGCCATCAGGTGTCATATGGAGAAATGATTGGATGTGACAACCCTGATtgtccAATCGAATGGTTTCACTTTGCATGTGTGGATCTCACAACAAAGCCCAAAGGAAAATGGTTTTGTCCGCGGTGCACCCAGGATCGGAAGAAAAAATAAGATTTCTAACTCTATGACTTTTATACATAActgtatgcatatatatgtattttgtcTATGTGGTAAAATAGGAtactatgtacagtataaatatatcaCTTTCTATATGACTATGATAAAGGAAGAGAGGGTCACAATGAAAcaaaacctttattttttaatgtacttgaaatgtgtctgttttgttatttcaaaaaaaagttgaatattGTACTGCAAGTAATCTggtatctattttatttttattttctatggAAAGTGTAAGcttacatgtgtatatatacacacttctACTGAATTAGCAACATAGGATTTCTTGCTAAATGAAGTCAAAGCACCAAAATCATTGTTCTTGCaacttcatttttaatatttacatgctGAAATGTTGTTAATGCCTCAAAAAAACATTCACGGCAAGAATTTAAGTTATGAGGATTTTATTTTGAACGTAAATGTTAAAGATGCCATGTGCAGCTGTCCTGCTGGATGTCGTATCtttagaggaaaaaagtgtTTATGACGTGACTACTTCTGTAACTCCATCCGGATGAACAACAGCTCATCTGTGTTACGTGTGTACTAACGGCTGCTGTTTTGGCAGAATCGGACTTTTCCTCCACCAGCTTTgatgcactttttcttttaaccAGAATTTGTTCCCTTGAGCACCATGACCAAGGCCTGTGTTCTCAGTAGTGTTTCAGAGGAGGGGTCAGGTCTCGGATCAGCTGTCCTGCTATGTCGTTTTGTTCATTAAACAACCTCTGGTCATGCATGTGTCCTAGAATGGAGGAACTCAGTCCTTAAGGAAATAAggggaccaaaaaaaaaaagaatccaatGAAGACCATAAATGCAGATCATCTTTGATGGGTTATTTGTGATGTTTGTATGTCAATCATAAATTAATACCCTGAATCAATACTCCTGCAAGATACTTTATTGCTCTGTATTTGagtttacatttgtaaatgtaactgAGTTTAAAATAACCCTAAGCATGGTGGTTTTATGATTACATCCCTACAGTCCACACGCTGGACAAAGTGTGCAACCTGTCTGCAGcatgaattttatttcttttttttaactgaactaAAAATCTGATTGGAAAATAGGCTTctggtttagggttagggttcttacagtttttacacctgtgtttttatttttttgtagggTTTGAGACACTTCTTTGCATCATCATAAAATCTGGATTTATTAAATGTACGTGCTGCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214014 lncRNA downstream 37837 13251418 ~ 13272942 (-) True G180819
TU213983 lncRNA downstream 134759 13094163 ~ 13176020 (-) True G180793
TU213972 lncRNA downstream 183341 13069936 ~ 13127438 (-) True G180783
TU213800 lncRNA downstream 262079 12989773 ~ 13048700 (-) True G180628
TU213798 lncRNA downstream 323256 12986787 ~ 12987523 (-) True G180627
TU214092 lncRNA upstream 109136 13426731 ~ 13430173 (-) True G180877
TU214294 lncRNA upstream 192856 13510451 ~ 13521721 (-) True G181047
TU214285 lncRNA upstream 229361 13546956 ~ 13570169 (-) False ptprsa
TU214309 lncRNA upstream 400728 13718323 ~ 13719757 (-) True G181062
TU214377 lncRNA upstream 737813 14055408 ~ 14055615 (-) True G181128
XM_026947751.2 mRNA downstream 2462 13303501 ~ 13308317 (-) True pigx
XM_026924707.2 mRNA downstream 8413 13286632 ~ 13302366 (-) True pak2b
XM_034308980.1 mRNA downstream 67579 13239723 ~ 13243200 (-) True rpp21
XM_026930328.2 mRNA downstream 79656 13158387 ~ 13231123 (-) True gpc5b
XM_034308427.1 mRNA downstream 79656 13172729 ~ 13231123 (-) False gpc5b
XM_026942133.2 mRNA upstream 88174 13405769 ~ 13424422 (-) True lmnb2
XM_026942022.2 mRNA upstream 114488 13432083 ~ 13446927 (-) True lonp1
XM_026926763.2 mRNA upstream 152992 13470587 ~ 13491174 (-) False si:zfos-943e10.1
XM_034308778.1 mRNA upstream 152992 13470587 ~ 13484001 (-) False si:zfos-943e10.1
XM_034308779.1 mRNA upstream 152992 13470587 ~ 13479989 (-) True si:zfos-943e10.1
TU214009 other downstream 67617 13239749 ~ 13243162 (-) False rpp21
trnam-cau_27 other downstream 74304 13236403 ~ 13236475 (-) True trnam-cau_27
TU213621 other downstream 590303 12717361 ~ 12720476 (-) True G180485
TU212758 other downstream 1806817 11496074 ~ 11503962 (-) False LOC117598430
TU212749 other downstream 1895339 11409092 ~ 11415440 (-) False G179803
TU214564 other upstream 1043341 14360936 ~ 14361647 (-) False LOC113527598
XR_004579086.1 other upstream 1091131 14408726 ~ 14415069 (-) False rx1
XR_003402957.2 other upstream 1122259 14439854 ~ 14460337 (-) False zfr2
XR_004579061.1 other upstream 1235560 14553155 ~ 14579747 (-) False lama3
TU215666 other upstream 2373179 15690774 ~ 15692350 (-) True G182210

Expression Profile