RNA id: XM_034308779.1


Basic Information

Item Value
RNA id XM_034308779.1
length 4399
RNA type mRNA
GC content 0.43
exon number 12
gene id si:zfos-943e10.1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13470587 ~ 13491174 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTAAGAAAACCAGACCTTGTGTTTTAAGGAAATGCACCTTAAATTAGGCATTGGTGATCTGTACTTGTGATGCAAGTTAACTATATATGAAGGATATGAATAGGAAATCACGTAGCAGGAAGTTTTAACATCTTCAACACACCCACAGAATTGAAGGCTTCCACAAAAAGAAGAGCCTACACAGGAAGCCGACGCTGACTCCTTTTTCTCCGCAGACGGCTTGAGGAAAGAGCGAGTCTGTCATTAGTGCTGCTCCACCCAGAGAAACAGGCACACTGAAATCTGTCAATCTGTGCACTTTAATTTCAAACTCTTTAtagttcagatttttttctgaaacgGCAGTGGTTAAAGCACCGCAGGTGTGAGTTTCATTGTGAGGAAGGAGGAAGTAGGGTGGGTTCTTGTCTGATTCAGGCAAGTCTGTACCTGCGTGCTTGCGTTATGCTGCATTGTGTGCGATGTCGGAGGTGTTTCATTTCATCACGCGATGGTGTGTCACACCTTTTCCAAGACCCACCTCTTACAAGAATTTCTATTCACTGAGAGGAGGTGGTTTAAAGTGTGCACTGTTCTGCTGTGACAatacagtgtttttctttttctgttgaACGACATACTcaggttttgatttattttttatggatTCTACCAGACGAGTGTGATTtacaaaggaatggcttgaaACTACTCATTTGGTTGCTACTTGAAAGGATTACGGTGCTATGCATAGATCTCTGAGTTTGAGATTATCCAGAAGACTAAATGAGTACAGCTACCCGGTGGAGAGCGGGTCTCTCCCCACGAGATCTAAGAAGGAGAAGACGGCGAAAAAGAAGCTGGAGCAAAAGAAAGCCTTCAGTCTGGAGGAAGCTCAGCTCGAGGTGGAGCAGCAGAACAAGAGCCAGAGCAGGCCGGCCCTGCCCAGGTCTCAGACAGTTGGAGGATCATTGGAAAGAACCGACAGCATGAACTCAAGAAGTAGCTTCATGAAGCACAACAAAACATTCCACAAACTCTTTCCAGACATCCCTGAGAGCGAAGACTTATTACACGCCTACATCTGTGCACTGCAGAGGGAGGTACCATACCATGGCCGTCTCTATATCACAGAGAACAACGTGTGCTTTCACTCCTCTGTGCTTCTCAAGGCCACCAAGgTGGTGATCCCCGTGTCTAATATCACTGTCCTGAAGAAGCAGAACACAGCGCTGCTGGTGCCAAATGCTCTGTCCATCCGTAGCAACCTGGGAGAGAAGtaTTTGTTCGTGTCTCTGCGGAACCGTGAAGGCTGCTACAAGCTGCTGCGCACTGTTTGCACACATCTGGAGGACATCAGCGCCAACAGCAGCCCTCTTTTCTCGTCCGCCGAGAACAGCTTCGATCAGGGCAAGCTGGTGaacTCGAGCCAGTCGAGCCTGACTGACGCCTACGAGGAGCTCGATGGAACAGACTCGGGACTTTTACCGCAACCTCCTCCTACTAAACTTCACAGAGCCTCAACCTCGAATGGAAGTCCTCCGCCTTTAAGAAGTCCTCTCAGAGAAGGTGATGAGAGTCCGACAGAGGAGCACACAGggggctCGTGGATGTGGAGCGTGACTGATGGAGCCAGATCACTGCTCATCCAGAGAGAACCCACCAACCTCAACACTCTGCTGCTCATCTACTTAATGCTggtggtGCTGCTCGTGTTGTCCTCTGGATATATCGGCCTGCGCATCGTGGCTCTGGAGGAGCAGCTGACCACTCTGGGAGCCTTGCCTGAATTCACTCTACACAGCGGGTACAAGGACACATAAGCATCCCAGTGAAAGGAGAGATGTGTTTATCTGATGACCCTGAGGAGGAATGACGGATTCTGATGATGTCAGTCCATACTTCAGCATTTCTCAGACCCCAGTAGAGCCAAAGTGCTGTGAACGTTATTCACTCACAGCAAGAAGAAAACCAAAGCGCTCCGTCACGCCGCGTCGTACCAGGAGACTGCTGATGCTTTTCTCCCACCGGAGCCAGACTCGGCTCTGAGCGGGACGCGGCGGCGCTCTAATGACAGCAGAAACCAAGCAGTTTCCAAAGAAAGGCTGTCTGTAGTGTAACTCAGCTACACTTTTTCAGGCTTTTCCTCCTTTCCACCTTTAACCCCAACATGGTTGATGATTGAATCTTTCATCCTTTCTGATCAAGCTCCTCTCGTGAAGatgatttttctctctgtttctgatCACCAGGTGGCAGTATTACACCTTGCTTTGGCATGATTCAGAAATTCATGAATGATCGCTGCTTGGTGGCCAatcttttcccctttttttttttcttttttccatcatttaTGGACGTATGCATCTTCTATGCACAAAATAATCTCCCGATCAGGTATTTTTAGCctcttttgtttgtcttttttgtacTTTGGTCGACAAAGTAGTCGACGCCCATTTCTAATCagataaactgttaaaaagatCCAGAGGCACTGTGCAGCCCAGACGggacatttttcaaattcacTACACAAAAAGACTCTGGCGTGTCTGAAAGGAGCAAAaccgccaaaaaaaaaaaaaaaaaaaggagagagaaacataCTTGAGTCACATTTCAAGAACTGACAAACTTTGACATGGTCCAATATATGCATGTTTAGtttgagtgtatgtgagtgtacaTACGATTATAAAATAAGAGACTTGAAGTGAATCAGTGCACTTTAATGTGTGTAGATTGTGGGAAAGCATCAGACTGTACAATGAGGAAGTCTGCTATCATCATCTGGACCTGGAGAATTATACCGGCATTATGCTTCATTTTACCTACACACACTTGTGCGCATtcttgtgtgttactgtgtaccAGGGTGTCCACACGTATACGGTTTTaattaagacattttaaattcaaCTCCAAATATTTCAGACAActattatatataacatatgaAAATACTTGCACATAAGGAAAATACTTGAATtacatgtattttaaattaagaaaaatgcaaaacaccATCTACTGTAAAAATCTCactgttaaagtgtgtgtaaagcacTAATACGCTGTAATTTGTTCTCTTAATTCAAACAGATGTTTTAAGCAGCAAGACTATTGAATTTTCATTTCCCCAAATCCTAGCCCAAGAGCAGGAAGCTAACACTGACCTTGATTTAATACACACTTCTTGTGCGAGTGGCCCTGGTATTATCCAGTAtcaaatattttcaaaacaGATTCACGTGAGAAAACTAAGTCAATCATGACTGATTAGGAATAGGCAAAAATCTTGGACGTGTGAAATAATATGTAAGATTTAAGCCTTGGATTAATACTATCAGTAATCACAGAATGATCGAGACTGTTTGAGGACATGTGGACACACTGGTGCACTTTTTGTGTTTCAGTAGGGTTAAAATCTCTGTCCACTAGGGGCAGATTTGAGCCCAGACATGTCTAGTCaacagcttttcattttacagtTGACCTGTAAAATATTAGTGATTTCGCACCAACCAGACCAATTTGTATATTTTCACACAGATATGGTTGTCATGGTGTCACGTTTAGACTAGCTTATCATACTCATGTCACATCTCGCTACTGGTTAATGTCAGTCTTGCATCCTGTGGAAGAGCACGAGCACAGGACAGCCATCCTGCACACCTGTATGGCGTATGTAGTTAAAATAGAGTACAACGCCGGCTTCAGAAGGTGCTAAAGAGTCTTTTACTCAGGGCTTCTCGCACTCAGCGCCCTGTTTCTCTCAATCCCTTACAGTGTACATCTGTGCTTTCTCGGCTCATAAAGAATTAGCTAATAATTTAAGTAAGGTGTGTTATAGCAGGGAAAGCACATGTCGAACTCAGCTCTGGGATTTCCTCTCCAACGCTTCTGCTGCTTCTTTATCTAAGATTAGCACAATGCCAACTCCAGTTGTGTTCATTACTAGCTACAATGTCTGTGTACCaccaggatgtttttttttatcttttttttaaatgatatatttaaagatatatataCCCCAATGAAGGCATGTTGATCATCCTGCTGGGGTATTTGTCACTGATCAGTTCATTCTGATTTCCTGATTTGATGGATCATTTTATCTACATCTAGTAAAGAGGAAAGAAGTGTTGCACAGAGACTAATTAAGAGACTAAAAGTGTTGGACTTGGCTCATTCTGAGCTTTTGTGATTCCCTTTCAATAATAACAATGCAGGAATTCAATGAGTGTATCATTTCTCTTTGCACTATTGAAGggtatgtaaatattattttgtattgatttgtctTTAAACAATCCCCACTGATCTATTTATTGCATTCTCTGTAAGGCAAAGTCATCTCTGTGAGACCAGCTTTGACGTTTGAATAAATCAAATGATTGGGGAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214092 lncRNA downstream 40414 13426731 ~ 13430173 (-) True G180877
TU214014 lncRNA downstream 197645 13251418 ~ 13272942 (-) True G180819
TU213983 lncRNA downstream 294567 13094163 ~ 13176020 (-) True G180793
TU213972 lncRNA downstream 343149 13069936 ~ 13127438 (-) True G180783
TU213800 lncRNA downstream 421887 12989773 ~ 13048700 (-) True G180628
TU214294 lncRNA upstream 30462 13510451 ~ 13521721 (-) True G181047
TU214285 lncRNA upstream 66967 13546956 ~ 13570169 (-) False ptprsa
TU214309 lncRNA upstream 238334 13718323 ~ 13719757 (-) True G181062
TU214377 lncRNA upstream 575419 14055408 ~ 14055615 (-) True G181128
TU214468 lncRNA upstream 600510 14080499 ~ 14124923 (-) True G181197
XM_026942022.2 mRNA downstream 23660 13432083 ~ 13446927 (-) True lonp1
XM_026942133.2 mRNA downstream 46165 13405769 ~ 13424422 (-) True lmnb2
XM_026927657.2 mRNA downstream 152992 13310779 ~ 13317595 (-) False ing5a
XM_026927665.2 mRNA downstream 153168 13310779 ~ 13317419 (-) True ing5a
XM_026947751.2 mRNA downstream 162270 13303501 ~ 13308317 (-) True pigx
XM_026945973.2 mRNA upstream 36694 13516683 ~ 13527764 (-) True tbxa2r
XM_026945905.2 mRNA upstream 36694 13516683 ~ 13527750 (-) False tbxa2r
XM_026946043.2 mRNA upstream 37660 13517649 ~ 13527750 (-) False tbxa2r
XM_026943826.2 mRNA upstream 66925 13546914 ~ 13783127 (-) False ptprsa
XM_026943911.2 mRNA upstream 66925 13546914 ~ 13783127 (-) True ptprsa
TU214009 other downstream 227425 13239749 ~ 13243162 (-) False rpp21
trnam-cau_27 other downstream 234112 13236403 ~ 13236475 (-) True trnam-cau_27
TU213621 other downstream 750111 12717361 ~ 12720476 (-) True G180485
TU212758 other downstream 1966625 11496074 ~ 11503962 (-) False LOC117598430
TU212749 other downstream 2055147 11409092 ~ 11415440 (-) False G179803
TU214564 other upstream 880947 14360936 ~ 14361647 (-) False LOC113527598
XR_004579086.1 other upstream 928737 14408726 ~ 14415069 (-) False rx1
XR_003402957.2 other upstream 959865 14439854 ~ 14460337 (-) False zfr2
XR_004579061.1 other upstream 1073166 14553155 ~ 14579747 (-) False lama3
TU215666 other upstream 2210785 15690774 ~ 15692350 (-) True G182210

Expression Profile