RNA id: XM_034308427.1


Basic Information

Item Value
RNA id XM_034308427.1
length 2042
RNA type mRNA
GC content 0.52
exon number 9
gene id gpc5b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13158387 ~ 13231123 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCAACTCCCCTCCTCTCTGAATTAGGCAGCAGCGCTTCTTTTAGCTCCTGTGAGTCTTCTGAGCTGCTGGGAATTCATAAGCATGTGAAATTCACCGCAGCTCTCTTTCAGGATATTACCAAAACTTGTCTTCATAAATACTGGACCGTAGGGAATCTTCCTGGGTAATTCTGCAGAATAGCTTTGCACTTCTTTGTCACTCTGTTATTATAGGAGACTATGGATTGAAATGGTGCAATGCTCCGTGAGACAGTGTGGCGAGTTTGGATCTGTTGGATATTGATGAGTTTTGGGCCTCAGTGGGGAGTTCAGAGCGCAGGTGCACATAGCTGCCACGAAGTTAAAACAGCTTTCCAACTGCGGCAGATTGGCCCTTTAAAATGGGTCCCAGAAACAGCGGCAACAGATGCGGAGCTCCAAATCTGCAAACACCAGGGTCCGACTTGCTGCACGCGCAAAATGGAGGAGAGCTACCATGCTGCTGCACGCAGAGACACACTGCAGAACATTCTCTCCTACAGCCTTGAGCTAAAGTACCTCATCATTGGCCATGCTGCCGCCATCCAGGACACCTTCCATTCCCTGCTGTCTTTCACACTCAaccacactctctcactcctcgACCTAGCCTACGAACCAATCGCTGCTGAGTCCCGTCCCTTAGTCTCCGCCCTCTTCTCTGACCTTGCTCTCTACCTGCGTGGCAATGATGACGTCTCTGTCATCCGCTCTGTGCGGCACTTTTTCGATGAGCTATTCCCGCTGGTCTATCGGCACCTGGTGAACCCAGGGCTGGCATCCTCCACCTGGTCAGCAGAGGGTGCCGAATGCCTCCACGCCACACGGCAAGACCTCAACCCATTCGGCCCTCACCCGCAGGCACTGGCACATGGGCTGGCACGGGTGTTAGGGGTCGGCCGATCACTCATGCAGGCACTAACAGTGGGCGTTGAGGTCCTGAACGCCTCAGAATCAGCAGGCATGGCAAAAGAGTGTGGAAGAGCAATAGTGAGGATGCAGTTCTGCTCACACTGCAAGGGGCTCACACTGATCCGGCCATGCCAGGGGCTCTGCCTGAATGTGATGAGGGGTTGCCTGGCAGGACTGGCGGAACTGCAAGGGCCATGGAGCCGCTACATAGCGCTGCTGGAGGGCACAAGTGCAGCACTGGCCGGAGGACATGAGCTGGAGCTAACTCTACTGGGCATTCGTGAGAGGATCAACGATGCCATCCTGAGTGCCCAGTTGAATGGACCACATCTCAGCGCCATTGTGGAAAAGGTGTGTGGTCCTCTCACTGAGTCTGCCTCATCCACTCAAGAAGGTCCAAAACTACAGAGTCTCTCACCACAGAGTCCTGCAGGCTTAGACCAGAGTTCGAGTGTGGAGCCAGTCTCCTCTATACCGTCCTTAAGCCCTACCATACAGGACAACTCTGATGATCACCGAGACAGCCACGTTACACTGAGGAAAAGATCCTTGCCTCTCAAACCTTCCAAGCATGACAAGCCCAGAAGTCTGAAGAAGCTGTCTAAGGAGTTTATGAGCTACATTCAGCGGTACAAATCCTTCTTCTCCATGTTGCCAGAGGTGCTATGTGACAGTGAGATGGTGCTGGATGAATACACCTGCTGGAATGGGGAGGATGTGGTGGAGAGttacacacattctGTGGTGGGGAACGGCTTCCAGGCCCAAAGACAAAACCCTGAGATTAAGGTCAGAGGTGTGGACCCGGTTTTAGTCGAGGCCAAAGAGACACTGGAGAGATTTAATCAGGATATGTGGGCTGAAACGGGATTGGATGATGAGCAGCATGAGCACTTGCATGTGGACAGTGGCAGTGGAACTGAAACCAGCGGCGAATGTGATGATGAAGACGGGTGTGAAGGTTCAGCGGAGGATGAAGAGGAAATagACCCCTGACTATGCAGTGCCCAAGACGGATGTGGTATTTAGCCTGTAACTTTATATATCCAGTTTATAGAAGCTGGGACTGATAAGTAGTTGCTGAGACTGAAATCTGGAACctggtgtaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213972 lncRNA downstream 45291 13069936 ~ 13127438 (-) True G180783
TU213800 lncRNA downstream 124029 12989773 ~ 13048700 (-) True G180628
TU213798 lncRNA downstream 185206 12986787 ~ 12987523 (-) True G180627
TU213802 lncRNA downstream 188616 12982012 ~ 12984113 (-) True G180629
TU213797 lncRNA downstream 192034 12976587 ~ 12980695 (-) True G180626
TU214014 lncRNA upstream 20295 13251418 ~ 13272942 (-) True G180819
TU214092 lncRNA upstream 195608 13426731 ~ 13430173 (-) True G180877
TU214294 lncRNA upstream 279328 13510451 ~ 13521721 (-) True G181047
TU214285 lncRNA upstream 315833 13546956 ~ 13570169 (-) False ptprsa
TU214309 lncRNA upstream 487200 13718323 ~ 13719757 (-) True G181062
XM_026930600.2 mRNA downstream 16711 13111812 ~ 13156018 (-) True gpc1a
XM_026930682.2 mRNA downstream 125881 13037990 ~ 13046848 (-) False lpl
XM_034308865.1 mRNA downstream 125881 13041002 ~ 13046848 (-) False lpl
XM_026930681.2 mRNA downstream 125882 13037990 ~ 13046847 (-) True lpl
XM_026930799.2 mRNA downstream 140185 13024401 ~ 13032544 (-) True LOC113536692
XM_034308980.1 mRNA upstream 8600 13239723 ~ 13243200 (-) True rpp21
XM_026924707.2 mRNA upstream 55509 13286632 ~ 13302366 (-) True pak2b
XM_026947751.2 mRNA upstream 72378 13303501 ~ 13308317 (-) True pigx
XM_026927657.2 mRNA upstream 79656 13310779 ~ 13317595 (-) False ing5a
XM_026927665.2 mRNA upstream 79656 13310779 ~ 13317419 (-) True ing5a
TU213621 other downstream 452253 12717361 ~ 12720476 (-) True G180485
TU212758 other downstream 1668767 11496074 ~ 11503962 (-) False LOC117598430
TU212749 other downstream 1757289 11409092 ~ 11415440 (-) False G179803
TU212647 other downstream 1926424 11243975 ~ 11246305 (-) False nppc
TU211855 other downstream 3357504 9813892 ~ 9815225 (-) True G179035
trnam-cau_27 other upstream 5280 13236403 ~ 13236475 (-) True trnam-cau_27
TU214009 other upstream 8626 13239749 ~ 13243162 (-) False rpp21
TU214564 other upstream 1129813 14360936 ~ 14361647 (-) False LOC113527598
XR_004579086.1 other upstream 1177603 14408726 ~ 14415069 (-) False rx1
XR_003402957.2 other upstream 1208731 14439854 ~ 14460337 (-) False zfr2

Expression Profile