rfxank (rfxank,LOC107599486,LOC107554808,LOC107687741,LOC107719616)


Basic Information

Item Value
gene id rfxank
gene name rfxank,LOC107599486,LOC107554808,LOC107687741,LOC107719616
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15665587 ~ 15668783 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912630.2
TAGTTCCTACGTGTTGGGGGGAAAAGCGCGTTCAACACAAGATGAAAAGAAAACGGTCTAAACTTCGCCAAATCTAAAAGTGGCGTTATGTTTGTTACTTTTAAACAAAACGTGTCACAAGTGTGATGTATGACTGTTTTTTACACCTCAAAATCGACGTGCTTTGAAATACCGGGGGATGATTTAGTTTCACTTTTGTTAGCTAGTAAATCAGGAACTAAAGAGAAATTGCTTTAAGAAGTGCTGATAGAGGAGCTACAGTTCCGATGTGATGATAAACACAGGGATGGAGAGTGTAAGTGACGAGAGCGCGCTTCACCACTCCACCACCCTCACTAACAAACAGCGCGGGAACGAGCTCACTGTCCCACCCGCCACTCTGGACAATTTGTCCATTCATCAACTGGCCGCTCATGGGGAAATCTCAAAAGTAAAGACACATCTTGCCAGTGacagTGCCCTATTGAACAGTCAGGATGAACGGGGATTCACGCCTCTTATGTGGGCAGCAGCATTTGGAGAGATTGAAATGGTCCAGTTTCTACTAGAGAAGGGTGCTGATCCGAAAACCTTCGCACGGGAGCGAGAGAGTGCTTTATCCTTAGCCAGTGCTGGGGGATACGCAGACATCGTTGAGATGCTTTTAACGCATGACCTTGATGTTGATTCCTATGATTGGAATGGAGGAACTCCTCTTCTTTATGCAGTTCGTGGCAATCATATAAAATGTGTGCAAGCTCTGTTAAgacaCGGAGCTGATATTACATTTGAAGCAGACTCCGGATACAGTCCAGTGGCGCTCGCCATTGCTCTCGGTTACAAAAAAATGCAAAAGCTGCTTGAGGATCACATACTGCACCTGCTTCGATGATCATACATGACTACATTTAAGAATCACAATTTTCTTTTTGAACGCAACGCTTTGTGTACCTTTGTAATAAAATgtcaatataaa
>XM_026912638.2
ATAGTTCCTACGTGTTGGGGGGAAAAGCGCGTTCAACACAAGATGAAAAGAAAACGGTCTAAACTTCGCCAAATCTAAAAGTGGCGTTATGTTTGTTACTTTTAAACAAAACGTGTCACAAGTGTGATGTATGACTGTTTTTTACACCTCAAAATCGACGTGCTTTGAAATACCGGGGGATGATTTAGTTTCACTTTTGTTAGCTAGTAAATCAGGAACTAAAGAGAAATTGCTTTAAGAAGTGCTGATAGAGGAGCTACAGTTCCGCAGATGTGATGATAAACACAGGGATGGAGAGTGTAAGTGACGAGAGCGCGCTTCACCACTCCACCACCCTCACTAACAAACAGCGCGGGAACGAGCTCACTGTCCCACCCGCCACTCTGGACAATTTGTCCATTCATCAACTGGCCGCTCATGGGGAAATCTCAAAAGTAAAGACACATCTTGCCAGTGacagTGCCCTATTGAACAGTCAGGATGAACGGGGATTCACGCCTCTTATGTGGGCAGCAGCATTTGGAGAGATTGAAATGGTCCAGTTTCTACTAGAGAAGGGTGCTGATCCGAAAACCTTCGCACGGGAGCGAGAGAGTGCTTTATCCTTAGCCAGTGCTGGGGGATACGCAGACATCGTTGAGATGCTTTTAACGCATGACCTTGATGTTGATTCCTATGATTGGAATGGAGGAACTCCTCTTCTTTATGCAGTTCGTGGCAATCATATAAAATGTGTGCAAGCTCTGTTAAgacaCGGAGCTGATATTACATTTGAAGCAGACTCCGGATACAGTCCAGTGGCGCTCGCCATTGCTCTCGGTTACAAAAAAATGCAAAAGCTGCTTGAGGATCACATACTGCACCTGCTTCGATGATCATACATGACTACATTTAAGAATCACAATTTTCTTTTTGAACGCAACGCTTTGTGTACCTTTGTAATAAAATgtcaatataaa

Function

symbol description
rfxank Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in MHC class II deficiency and severe combined immunodeficiency. Orthologous to human RFXANK (regulatory factor X associated ankyrin containing protein).

NR:

description
DNA-binding protein RFXANK-like

GO: NA

KEGG:

id description
K08062 RFXANK; regulatory factor X-associated ankyrin-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912630.2 False 955 mRNA 0.44 8 15665587 15668782
XM_026912638.2 True 959 mRNA 0.44 8 15665587 15668783

Neighbor

gene id symbol gene type direction distance location
ncanb ncan,LOC108270525,LOC103376785 coding downstream 20973 15535310 ~ 15644614 (-)
si:ch73-63e15.2 LOC108271013,LOC108429539,LOC107669818,LOC106573581 coding downstream 162931 15445028 ~ 15502656 (-)
tjp3 LOC108271152 coding downstream 226863 15417214 ~ 15438724 (-)
arhgap45b LOC108271042,LOC108429536,LOC107655244,LOC107669820 coding downstream 252955 15393109 ~ 15412632 (-)
pip5k1ca pip5k1c,LOC108429534 coding downstream 300015 15332264 ~ 15365572 (-)
tmem221 tmem221 coding upstream 2823 15671606 ~ 15675230 (-)
tmem161a tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814 coding upstream 26371 15695154 ~ 15705238 (-)
cirbpb cirbp,LOC108271114 coding upstream 211447 15880230 ~ 15885868 (-)
midn midn,LOC108271022,LOC103463687,LOC102230511,LOC106954193,LOC100691436,LOC102311033 coding upstream 302803 15971586 ~ 15990415 (-)
atp5f1d atp5d coding upstream 333268 16002051 ~ 16010315 (-)
G181810 NA non-coding downstream 497916 15167158 ~ 15167671 (-)
G181781 NA non-coding downstream 538405 15126661 ~ 15127182 (-)
G181779 NA non-coding downstream 543921 15121455 ~ 15121666 (-)
LOC117598447 NA non-coding downstream 601550 15060131 ~ 15064037 (-)
G181721 NA non-coding downstream 683028 14977671 ~ 14982559 (-)
G182209 NA non-coding upstream 19416 15688199 ~ 15688418 (-)
G182212 NA non-coding upstream 25186 15693969 ~ 15694702 (-)
LOC113546824 NA non-coding upstream 161741 15830524 ~ 15833544 (-)
G182298 NA non-coding upstream 224063 15892846 ~ 15893060 (-)
G182303 NA non-coding upstream 235495 15904278 ~ 15978716 (-)
lama3 LOC108270685 other downstream 1085840 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 1157977 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 1171728 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 1205250 14437360 ~ 14460337 (-)
rx1 LOC108270609 other downstream 1250518 14408726 ~ 14415069 (-)
G182210 NA other upstream 21991 15690774 ~ 15692350 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 606099 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 1576989 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 1674032 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 3647336 19316119 ~ 19316374 (-)

Expression


Co-expression Network