tmem161a (tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814)


Basic Information

Item Value
gene id tmem161a
gene name tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15695154 ~ 15705238 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912593.2
CCCCAGCGCTGGATAGAATAGGTCACAAATGTCATTCAAAACTCATTCAGCTGTTTCTAGTACTCAAGTGGTAGCAGTGCGGTAGCTGCTGAGAGCTGCATGGGACCACGCATGCTAATTAAATCCATTAATTCAAGATGGCACTGATGGGAGTTCAGCTGGTGGTCAGCTTGCTGGCGGTCAGCATAATGCAGAAAATGGCCCCGCATTGCTCCTTCGCACGCTGGCTCCTATGCAACGGCAGTCTCTTGAGGTTCAAGCATCCTTCCGAGGGAGAACTTTGTGCACTAGCAGGCAAGCAGATGCCCAGCAAGCCCGGCAGGAGAGACAGGAGGCAGAATGGCCACGGGGAGCCCAAGCCACTCACAGTCCCGAAGGACATTGATTTACACCTGGAGAGCACCCCTGTGAACGTTATAGATGCTCTGGTGCTGCGGTTCTTCGTGGAGTACCAGTGGTTGATCGACTTTGCCGTCTATGCAATGGGCATCTACCTCTTCACTGAGGGCTACTACTTTGTGGTGGATGCCAGTAAAGAGGTCAACATTGGGGCCATCTGGTGTGTCCTGATGGTGTTCTTCTGCCTGAGGACTCTGCATGTGCTGATGAGCCACTACTTCCGCTCAGACGAGGGCGGCGAGCGCTCTGTGTGCTTGGCATTTggcttcctctctctgctcgTGGCCATGTTAGTTCTCGTGGTGAGGGAGGACTATCTGGAGTTTGGCCTTGAGTCTGGTTTCACCAGTGTCTTTGATAACTTTGAAGCTTTTGCCAAACAACAAGGATTTGAATGGTCCATTCCTTTCACCAAACTGGGAGTGAAGTTGGGCTTGGCTTTCATTTGTGCCTTCTTCGGAGCTCTGCTTGCTTTCCCTGGACTTCGCCTGGCCCAAACTCACTTAGACGCTGTACAGATGAATGCTAGTAGGCCAATCATTCAAATCCTTCTGCACACCAGTTTTTTGTCCCCGTTGGTTATACTTGTGTTGTGGATCAAGCCTCTTGCTCGTGACTTCTTAGGAAACGCTCCTATGGGAAAGACTTCAGTTAcattgcTTTCCAGCTCGGCCTTTGACTCAGTGCGTCTGTGGATGATTATAGGGTTGTGTGCGCTGAGGCTGCTGCTCACCCGCTACCACCTGCAGGCTTACCTGAACCTCGCCCCCAAATGGGTGGAGCAGATGAAGAAGGAAGCAGGGCGTATTGCTGCTATTGACATCCAGAGAAAGGTGACCCGTGTGTACTGCTACCTGACTGTAGTAACGCTACAGTACCTCATCCCTGTTCTGCTTGTGCTGTTCTCAACTCTGGCCCTCAAGGCTCTAGGTGACTACTCATGGGGGCTGGGCGCGGAGACTCCAGGTGTGACGCTGGCACCAGTTCTTCCCACCACTCCTCCCCCTTTACCCAGGTCAGGAGAAGAGGACGATATAGAGGACATGGAGGAGGACATCCAAGTCACCGTAGCCCACCTGGCCGAGGTCTTTTCCGCACTACGTTCCGTCCTCACCCCTGTCTTCTTCAGAGGAATCTTTGCCTTCCTCACTTGGTGGGTGGCGGCCTGCCAGCTCATCAGCAGCCTGTTCGGCATCTACTTTCACCAGTATCTCGTGcagagctgagctgagctgaggaACACCCCTGTGTGCGGGCTGTGTGCACTGCGACAAGCTAATCGAGCTCCTGAGGAGAACACTTGAGctccaccaacacacaccaggTGTGTTTATGCCTCTGTGGGTTTGATCTTTACTGGAGACCGTGATGTTTGGTCTAAGACAAAGACAATGCTGAAGTGTTGATTTTGAAGCATTTTTACTGAAACAGATGAATTTGTTTGCTACACAAGACTTTAAATCAAATGGAGAAAGTGCAGAAGGAAAGTTGttgtataaaaaatgttttattttgttgaatAATCTGTTGCTACAAATTGAATCACCTTAATAATTTTGAAGAACTTCCACTGTTATTCAACAGTTAGTTAAAGTTTATGAGATGTGATACTAAGTGCCTGGTAACTCAGGGATTTGAAATCACAATTTTCCTTTACCAGCACTGTACTAATTATAAACTGCTTACTTTGATGCTGTAGCTTTAAACACAGAGGCACAAAATAGCAGGTTGCAGTTTTGCTCACTCCTGTTTCCCTCAGCTTGAGTGCTGATGTATTAAACGTTTTGGTACTTGCACAGTATTTTATCCAGTTTTGCTGATAAGCTCCTGAATCATGCTAAAATAACAATccaatcaatttttttttctaatttatttatttaccctaGTCCCATTGAATGACCACACACTAATTTAGTATAAGGTGATTTGTTTAGGTTAGAGCAGGTTTTAAGATGAAATGCATGGTGTGACAGAACTGTTtgactgagagtgtgtgttttattaaaattcaaaatgcctCGAAA

Function

symbol description
tmem161a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; myotome; polster; and somite. Orthologous to human TMEM161A (transmembrane protein 161A).

NR:

description
PREDICTED: transmembrane protein 161A

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912593.2 True 2426 mRNA 0.48 12 15695154 15705238

Neighbor

gene id symbol gene type direction distance location
tmem221 tmem221 coding downstream 19924 15671606 ~ 15675230 (-)
rfxank rfxank,LOC107599486,LOC107554808,LOC107687741,LOC107719616 coding downstream 26371 15665587 ~ 15668783 (-)
ncanb ncan,LOC108270525,LOC103376785 coding downstream 50540 15535310 ~ 15644614 (-)
si:ch73-63e15.2 LOC108271013,LOC108429539,LOC107669818,LOC106573581 coding downstream 192498 15445028 ~ 15502656 (-)
tjp3 LOC108271152 coding downstream 256430 15417214 ~ 15438724 (-)
cirbpb cirbp,LOC108271114 coding upstream 174992 15880230 ~ 15885868 (-)
midn midn,LOC108271022,LOC103463687,LOC102230511,LOC106954193,LOC100691436,LOC102311033 coding upstream 266348 15971586 ~ 15990415 (-)
atp5f1d atp5d coding upstream 296813 16002051 ~ 16010315 (-)
polrmt polrmt,LOC107569035,LOC101483880,LOC107719647 coding upstream 418265 16123503 ~ 16172315 (-)
celf5a celf5 coding upstream 629715 16334953 ~ 16523168 (-)
G182212 NA non-coding downstream 452 15693969 ~ 15694702 (-)
G182209 NA non-coding downstream 6736 15688199 ~ 15688418 (-)
G181810 NA non-coding downstream 527483 15167158 ~ 15167671 (-)
G181781 NA non-coding downstream 567972 15126661 ~ 15127182 (-)
G181779 NA non-coding downstream 573488 15121455 ~ 15121666 (-)
LOC113546824 NA non-coding upstream 125286 15830524 ~ 15833544 (-)
G182298 NA non-coding upstream 187608 15892846 ~ 15893060 (-)
G182303 NA non-coding upstream 199040 15904278 ~ 15978716 (-)
G182318 NA non-coding upstream 264827 15970065 ~ 15974619 (-)
G182325 NA non-coding upstream 292458 15997696 ~ 15997897 (-)
G182210 NA other downstream 2804 15690774 ~ 15692350 (-)
lama3 LOC108270685 other downstream 1115407 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 1187544 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 1201295 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 1234817 14437360 ~ 14460337 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 569644 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 1540534 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 1637577 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 3610881 19316119 ~ 19316374 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 3990024 19695262 ~ 19697709 (-)

Expression


Co-expression Network