RNA id: XM_026912593.2


Basic Information

Item Value
RNA id XM_026912593.2
length 2426
RNA type mRNA
GC content 0.48
exon number 12
gene id tmem161a
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15695154 ~ 15705238 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCAGCGCTGGATAGAATAGGTCACAAATGTCATTCAAAACTCATTCAGCTGTTTCTAGTACTCAAGTGGTAGCAGTGCGGTAGCTGCTGAGAGCTGCATGGGACCACGCATGCTAATTAAATCCATTAATTCAAGATGGCACTGATGGGAGTTCAGCTGGTGGTCAGCTTGCTGGCGGTCAGCATAATGCAGAAAATGGCCCCGCATTGCTCCTTCGCACGCTGGCTCCTATGCAACGGCAGTCTCTTGAGGTTCAAGCATCCTTCCGAGGGAGAACTTTGTGCACTAGCAGGCAAGCAGATGCCCAGCAAGCCCGGCAGGAGAGACAGGAGGCAGAATGGCCACGGGGAGCCCAAGCCACTCACAGTCCCGAAGGACATTGATTTACACCTGGAGAGCACCCCTGTGAACGTTATAGATGCTCTGGTGCTGCGGTTCTTCGTGGAGTACCAGTGGTTGATCGACTTTGCCGTCTATGCAATGGGCATCTACCTCTTCACTGAGGGCTACTACTTTGTGGTGGATGCCAGTAAAGAGGTCAACATTGGGGCCATCTGGTGTGTCCTGATGGTGTTCTTCTGCCTGAGGACTCTGCATGTGCTGATGAGCCACTACTTCCGCTCAGACGAGGGCGGCGAGCGCTCTGTGTGCTTGGCATTTggcttcctctctctgctcgTGGCCATGTTAGTTCTCGTGGTGAGGGAGGACTATCTGGAGTTTGGCCTTGAGTCTGGTTTCACCAGTGTCTTTGATAACTTTGAAGCTTTTGCCAAACAACAAGGATTTGAATGGTCCATTCCTTTCACCAAACTGGGAGTGAAGTTGGGCTTGGCTTTCATTTGTGCCTTCTTCGGAGCTCTGCTTGCTTTCCCTGGACTTCGCCTGGCCCAAACTCACTTAGACGCTGTACAGATGAATGCTAGTAGGCCAATCATTCAAATCCTTCTGCACACCAGTTTTTTGTCCCCGTTGGTTATACTTGTGTTGTGGATCAAGCCTCTTGCTCGTGACTTCTTAGGAAACGCTCCTATGGGAAAGACTTCAGTTAcattgcTTTCCAGCTCGGCCTTTGACTCAGTGCGTCTGTGGATGATTATAGGGTTGTGTGCGCTGAGGCTGCTGCTCACCCGCTACCACCTGCAGGCTTACCTGAACCTCGCCCCCAAATGGGTGGAGCAGATGAAGAAGGAAGCAGGGCGTATTGCTGCTATTGACATCCAGAGAAAGGTGACCCGTGTGTACTGCTACCTGACTGTAGTAACGCTACAGTACCTCATCCCTGTTCTGCTTGTGCTGTTCTCAACTCTGGCCCTCAAGGCTCTAGGTGACTACTCATGGGGGCTGGGCGCGGAGACTCCAGGTGTGACGCTGGCACCAGTTCTTCCCACCACTCCTCCCCCTTTACCCAGGTCAGGAGAAGAGGACGATATAGAGGACATGGAGGAGGACATCCAAGTCACCGTAGCCCACCTGGCCGAGGTCTTTTCCGCACTACGTTCCGTCCTCACCCCTGTCTTCTTCAGAGGAATCTTTGCCTTCCTCACTTGGTGGGTGGCGGCCTGCCAGCTCATCAGCAGCCTGTTCGGCATCTACTTTCACCAGTATCTCGTGcagagctgagctgagctgaggaACACCCCTGTGTGCGGGCTGTGTGCACTGCGACAAGCTAATCGAGCTCCTGAGGAGAACACTTGAGctccaccaacacacaccaggTGTGTTTATGCCTCTGTGGGTTTGATCTTTACTGGAGACCGTGATGTTTGGTCTAAGACAAAGACAATGCTGAAGTGTTGATTTTGAAGCATTTTTACTGAAACAGATGAATTTGTTTGCTACACAAGACTTTAAATCAAATGGAGAAAGTGCAGAAGGAAAGTTGttgtataaaaaatgttttattttgttgaatAATCTGTTGCTACAAATTGAATCACCTTAATAATTTTGAAGAACTTCCACTGTTATTCAACAGTTAGTTAAAGTTTATGAGATGTGATACTAAGTGCCTGGTAACTCAGGGATTTGAAATCACAATTTTCCTTTACCAGCACTGTACTAATTATAAACTGCTTACTTTGATGCTGTAGCTTTAAACACAGAGGCACAAAATAGCAGGTTGCAGTTTTGCTCACTCCTGTTTCCCTCAGCTTGAGTGCTGATGTATTAAACGTTTTGGTACTTGCACAGTATTTTATCCAGTTTTGCTGATAAGCTCCTGAATCATGCTAAAATAACAATccaatcaatttttttttctaatttatttatttaccctaGTCCCATTGAATGACCACACACTAATTTAGTATAAGGTGATTTGTTTAGGTTAGAGCAGGTTTTAAGATGAAATGCATGGTGTGACAGAACTGTTtgactgagagtgtgtgttttattaaaattcaaaatgcctCGAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215668 lncRNA downstream 452 15693969 ~ 15694702 (-) True G182212
TU215665 lncRNA downstream 6736 15688199 ~ 15688418 (-) True G182209
TU215191 lncRNA downstream 527483 15167158 ~ 15167671 (-) True G181810
TU215156 lncRNA downstream 567972 15126661 ~ 15127182 (-) True G181781
TU215154 lncRNA downstream 573488 15121455 ~ 15121666 (-) True G181779
XR_003404752.2 lncRNA upstream 125286 15830524 ~ 15833544 (-) True LOC113546824
TU215771 lncRNA upstream 187608 15892846 ~ 15893060 (-) True G182298
TU215779 lncRNA upstream 199040 15904278 ~ 15978716 (-) True G182303
TU215798 lncRNA upstream 264827 15970065 ~ 15974619 (-) True G182318
TU215805 lncRNA upstream 292458 15997696 ~ 15997897 (-) True G182325
XM_026912617.2 mRNA downstream 19924 15671606 ~ 15675230 (-) True tmem221
XM_026912638.2 mRNA downstream 26371 15665587 ~ 15668783 (-) True rfxank
XM_026912630.2 mRNA downstream 26372 15665587 ~ 15668782 (-) False rfxank
XM_026924290.2 mRNA downstream 61594 15535310 ~ 15633560 (-) False ncanb
XM_026916579.2 mRNA upstream 174992 15880230 ~ 15885868 (-) False cirbpb
XM_026916574.2 mRNA upstream 176417 15881655 ~ 15885868 (-) True cirbpb
XM_026919604.2 mRNA upstream 266348 15971586 ~ 15990415 (-) True midn
XM_026929730.2 mRNA upstream 296813 16002051 ~ 16010315 (-) True atp5f1d
XM_026924607.2 mRNA upstream 418265 16123503 ~ 16172315 (-) True polrmt
TU215666 other downstream 2804 15690774 ~ 15692350 (-) True G182210
XR_004579061.1 other downstream 1115407 14553155 ~ 14579747 (-) False lama3
XR_003402957.2 other downstream 1234817 14439854 ~ 14460337 (-) False zfr2
XR_004579086.1 other downstream 1280085 14408726 ~ 14415069 (-) False rx1
TU214564 other downstream 1333507 14360936 ~ 14361647 (-) False LOC113527598
TU216001 other upstream 569644 16274882 ~ 16278809 (-) True micos13
TU216002 other upstream 570430 16275668 ~ 16278809 (-) False micos13
TU216000 other upstream 570628 16275866 ~ 16278809 (-) False micos13
TU216003 other upstream 570628 16275866 ~ 16278857 (-) False micos13
TU216998 other upstream 1540534 17245772 ~ 17342243 (-) False zgc:172076

Expression Profile