RNA id: XM_026929730.2


Basic Information

Item Value
RNA id XM_026929730.2
length 743
RNA type mRNA
GC content 0.54
exon number 5
gene id atp5f1d
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16002051 ~ 16010315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTAACTCCACTGTGCCCTTGCGCTCTCGGTTGCtcactgaatgactgactgCTCGCTCGCTCGGCCCGGGGGTCTGTAGCTCGTTTATTTGTGTGCTGGAAAGTCGAGCTTTGTTCACAGTTAGAAGACAGAATGATGGCCGCGAGATTTCTGCTCCGCCGCGCGGCTCCTGCGCTGAAACAGGTTCGCGCTTACGCCGAGGCGGCCGCCGGGTCTCCGCAGATGTCCTTCACATTCGCCTCGCCGAATGAGGTCTTCTTCAATGGAGCCAGTGTGAAGCAGGTCGATGTCCCCACGATGACCGGCGCCTTCGGTATCCTCCCTGCTCATGTCCCCACGCTGCAGGTGCTGAGGCCCGGGGTGGTCACTGTCTTCAGCGAGGACGGCTCCTCTGCTAAGTATTTTGtgagcagtGGTTCAGTCACCGTCAATGCTGACTCTTCGGTGCAGCTGCTTGCTGAGGAGGCTGTTCCTCTGGATAGCCTGGACCTTTCTGCTGCTAAAGCTAATCTGGATAAGGCCCAGTCCGAGTTGGTCAGCGCTTCAGATGAGGCCTCTAGGGCAGAAGCCCAGATCAGCATAGAAGCCAATGAAGCTATCATCAAAGCTCTGGAATAAATTTGTCATCTTCATGGTCAGAAGCTCTTATCAATTCCCGAACCCAGACGAAGTCAGTAACCGCAAGTCAAGCCGATTGCTTTGTACAGTGGATGAATATACCAATAAATTTATTTGGAAATAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02134 ATPeF1D, ATP5D, ATP16; F-type H+-transporting ATPase subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215807 lncRNA downstream 1738 16000078 ~ 16000313 (-) True G182327
TU215805 lncRNA downstream 4154 15997696 ~ 15997897 (-) True G182325
TU215779 lncRNA downstream 23335 15904278 ~ 15978716 (-) True G182303
TU215798 lncRNA downstream 27432 15970065 ~ 15974619 (-) True G182318
TU215771 lncRNA downstream 108991 15892846 ~ 15893060 (-) True G182298
TU215823 lncRNA upstream 22661 16032976 ~ 16033187 (-) True G182340
TU215824 lncRNA upstream 25894 16036209 ~ 16036422 (-) True G182341
TU215857 lncRNA upstream 64316 16074631 ~ 16081303 (-) False G182372
TU215858 lncRNA upstream 64316 16074631 ~ 16081303 (-) True G182372
TU215998 lncRNA upstream 249743 16260058 ~ 16260316 (-) True G182493
XM_026919604.2 mRNA downstream 11636 15971586 ~ 15990415 (-) True midn
XM_026916579.2 mRNA downstream 116183 15880230 ~ 15885868 (-) False cirbpb
XM_026916574.2 mRNA downstream 116183 15881655 ~ 15885868 (-) True cirbpb
XM_026912593.2 mRNA downstream 296813 15695154 ~ 15705238 (-) True tmem161a
XM_026912617.2 mRNA downstream 326821 15671606 ~ 15675230 (-) True tmem221
XM_026924607.2 mRNA upstream 113188 16123503 ~ 16172315 (-) True polrmt
XM_026922641.2 mRNA upstream 265333 16275648 ~ 16278820 (-) False micos13
XM_034308831.1 mRNA upstream 324638 16334953 ~ 16523168 (-) False celf5a
XM_034308830.1 mRNA upstream 324638 16334953 ~ 16523168 (-) False celf5a
XM_026921572.2 mRNA upstream 324638 16334953 ~ 16523168 (-) False celf5a
TU215666 other downstream 309701 15690774 ~ 15692350 (-) True G182210
XR_004579061.1 other downstream 1422304 14553155 ~ 14579747 (-) False lama3
XR_003402957.2 other downstream 1541714 14439854 ~ 14460337 (-) False zfr2
XR_004579086.1 other downstream 1586982 14408726 ~ 14415069 (-) False rx1
TU214564 other downstream 1640404 14360936 ~ 14361647 (-) False LOC113527598
TU216001 other upstream 264567 16274882 ~ 16278809 (-) True micos13
TU216002 other upstream 265353 16275668 ~ 16278809 (-) False micos13
TU216000 other upstream 265551 16275866 ~ 16278809 (-) False micos13
TU216003 other upstream 265551 16275866 ~ 16278857 (-) False micos13
TU216998 other upstream 1235457 17245772 ~ 17342243 (-) False zgc:172076

Expression Profile