RNA id: XM_026924607.2


Basic Information

Item Value
RNA id XM_026924607.2
length 4688
RNA type mRNA
GC content 0.50
exon number 21
gene id polrmt
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16123503 ~ 16172315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTCTGATCGCGTCTgaatcaaaatggccgcctgCTGAGAGAGTAATGCGGTTGTTGTGAACTCTTGAACATGTCGAAATGTCACTTTTAAGACTGTGCGCTTTTCCGAAATACTTGAGCGGTAAATTCATGTTTGAAAGAAGTGCTCGTTTTACATTAAATGTCGACCACTGTCAAATCTGCCTCAGACTCCGGAATAACTGCGAGAGAGGAACAAGAGATAACCCATGGACAACACTGCACCAAAGGCACTACTCTGCAATTCCAAAGAAGGAAGATGGAAAAAGAGCGAGTGTGGGAACAGTCTCATTTGTTGGATGTTCTCGAGGCTCGGATGCAGCAGTTGCAGTCTGATGTTTTACATGTAAATCATTTGAAGGTTGAGTTTGTCAAAATGCcacaaggagaaaaaagagcCACTCCTGTGAAGAGTCAAAAGACAGTGGCAGAAACTCCTAAAGCTGTTCAGTCCACTAAAAAAGATGCCACGTCAGATAACTCACCCTCCAAAACACACACGAGCCGCTGGATTGAAAAACTAAAGCTTGAGAActcaaacaaaactaaaaaacagTCGTCTCTGCAGCAGAAACTCCGTgacaaaacaacagcagcagcgaAAAGCAGTAAAGGAAATCTGATGGCTcctggaacatccatgaaaacAATCACTACTGCCAAAAGGAGCAAACAAGCCAAACCCGAGTCCACAGCGGGTCCAACGCCTCAGTCCAAACACTTAAAACCAAAGGTGTCTAAACGTAGTACAAGTGCAACCACAGTGAAAGAGGATCCTGAAGAACTTTCCAGAGCTGAAGAGCTGGCTGAAGTCGAAGAGCTCGAAGAGATGATCGGTGAGTGGAGTCCAACGAACGCCGAGAAACTTCTGGAAGATAAAGACGGGAACCGTTATGGCGACGCGCAGCTAAACTTGCGCTGCTACCTGGAGGCATGTGTTTTTACGGGTGATGTGGAGCGAGCGCAGCGCTGCCTGTTTTTTCACCACCGGCACCTAAGCAAACGCAAAACACTCTCCATCAGCGCCTACAACATCATGATGAGGATGTGGGCCAAGAAGGGATCTGTGAATCACATTGGTCGCTTATTCGTTCTGGTGGAGGAAGCAGGCCTGAAGCCCAACCTGGTGTCATACGCCACGGCTCTGGAGTGCATGGGCCGCAATCCTGAGACCTCTTCACGCACCATTAACAGgtgtctgCAGCAGATGGCTGAAAGTGGCCTGTGTTTGGACGACATGTTCAGACAGTGTGTATTCAGACAGGATGAGCGAGACATGGTGCTGAAGGCCATCCGGACCGTACAACCCGACTATGAGCCACACTCTCCTACTGAACGGCTGCACTGCTCATTACCACTGGCGGAGAGCTTTTATACACAGAGGGAAGAAACCAGCTATCCTAAGCTAGACTTTAGTGTGGCTGAGCTGCAGGAGCGCTTCAGGCGTCAGCTGGCTATGGAGCAGgccaacaccatcaccatcgaCTCTGTGGAGGCCATTAAACCTGTCACCGAACACATGGCCAGGATGAGGAAGCTGTTAGCCGAGCAGCACTCTCACTGGCACAAAGCGCTGCTACAGGCTCTGAGAGAGAGCCGGATGGTTTTAGGCAGCAGCAACCAGAGGAACTGGAAGATCAGCATTTACCCATTCCTGCGCATCCTTCGCGATGAGGATTACGTCAACATCATGCTGCAGGGATTGGCCAGCCTGCCACCCAGCGGAGAGTCTCTGCTATTCCTGGCTAAGGAACTGGGCAACAGAGTCCACAACGTGTACTGCATCCAACAGAAGAGTCACAGCCAGATAGTGGAGAAACTGGGCAACATCTACAACTCATACGTGAAACTGCTTGGAAAAGACACAGAGCCCAGCAACGTGTTGCCACGGGAGCAATGGAGCACTATGGAGGCGGAGCGAACtgctggcccctccctcctgaGCGATGACACGCCCTGGCCACACATGCTGGTCATTCAGCTGGGCAGTTTCCTGGTGGATCTGCTGGTTCGCGAGCTCAAAATCCCGAACAACATCCTGAACCCCACCCTGGAGAACAAGCTCATCCCTGTGCTCTATCACATGTACACATTCCGCAGCAATCGGCAGATTGGTTTTATCAAGCCACACCCAATCCTGACCCAAATACAGTCAGAAGCCATGGAGACCAAGCTGACCTTTGACTCGTATGTGATGCCCATGCTGTGCCCACCAGTGCCCTGGACATCAGCCAAGAGTGGAGCTTACCTGCTAACTCCCACCAAGCTGATGCGCTCAGTTGAGGGTGCCATCCAGCACCAGCTGCTGCTGGAGAAGCGCCAGGATGAGGAACTGCATGCTGTGCTGGACTCCCTCAGCCAGCTGGGCAACTGTGCCTGGAGAATCAACAAACCTCTGTTGGACATAATCATCTCCATCTTTAACGATAAGGGTAGTGAGAAGCTGGACGTGCCTCCACCCATTTCCGAGGCGCCAGAAATCCCACGCTTCAACCCTCACGACCCGGCATACACGCCCGCCGAGAAGGCCCACCTGAAGCGTGAGGCCACAAGGGCCAAGAAGAAGGTGGCTGAGATGCACAGTCTGCGCATGGATGCACTCTACAAGCTGTCCATCGCCAACCACATGAGGGATGAGATCTTCTGGTTCCCTCACAACATGGATTTCCGAGGGCGTACTTACCCGTGCCCACCTTACTTTAATCATCTGGGAAGTGATGTAACCAGAGCCATCTTGCTGTTTGCTGAGGGGAAGCCGTTGGGTCCTAAAGGCCTGGACTGGTTAAAGATCCACCTGGTGAACCTCACGGGTCTGAAGAAGCGGAGTTCGCTAGCTGGGAGACTGGAATACGCCAACAGCATCATGGATGATATCCTAGACTCTGCAGACAACCCTTTAATGgGGAGGAAGTGGTGGATGAATGCTGATGAGCCTTGGCAGACTCTGGCATGCTGCATGGAAATAGCAAATGCCTCCAGATCACATGACCCCACGCAGTTCATCTCCCATTTCCCTGTACATCAGGATGGCTCCTGTAATGGCCTCCAGCACTATGCTGCACTGGGTCGTGACGTCATTGGTGCAACGTCGGTAAACTTAATGCCCTGTGAAGAACCGCAGGATGTCTACAGTGGTGTGGCTCAGCAGGTGGAGGAGTTTCGGGCCCGAGACGCTGCTAAGGGCATGAAGATTGCACAGGTGCTGGAGGGCTTCATCAGCAGGAAGGTAGTGAAGCAAACTGTGATGACGGTGGTCTATGGGGTCACGCGCTATGGTGGCCGACTGCAGATCGAAAAGCGCCTCAAGGAGATCGATGACTTCCCCAAGGAGTATATTTGGGACGCCTCACACTACCTAGTGCACCAGGTCTTCAGCAGCTTGAAGGAAATGTTCACTGGGACAAGAGAGATCCAGGACTGGCTAACTGAGAGTGCTAGGCTAATCGCTAAGTCTGGCAGCACGGTGGAGTGGGTGACCCCTCTGGGACTGCCCATCGTCCAGCCCTACCACCGCACCAGGAACCACGTGctCAAGAGCAACATTCAGTTTCTGAGTCTCCAGATAAGCCATGACGTCTATGAGAGGCCAGACACAGTAAAGCAAAAGAATGCATTTCCCCCAAACTTCATCCATTCTCTGGACTCCACACATATGATGCTGACTGCACTCAACTGTTACAGTGCTGGTTTGACATTCGTATCAGTGCATGACTGCTACTGGACCCATGCTCTTTCAGTAGACATCATGAACAAGGTGTGTCGTGAGCAGTTTGTGGCTCTGCACAGTCAGCCCATTCTGCAGAACCTCTCCAAGTTCCTGCTGCAAAAATACTGCTCAGGACCACCGGGCAACACCAAGAGCAAGAAGTTTCTGGAGTACTGGAAGATGTCGCAGCTGCTGGGGAAGGTTCCAGAAACAGGTGATTTTGATCTGCAGAGGGTGAAGGAATCCACATATTTCTTCAGTTGATGTAGATGAAGAACCTTCACAGGTTGAACCGGAGAGGAAGTGCTCTCCATGCTCTCTCCATCCTGGGCACCGAGACTGAGAGTCTGAATcaactgctgctactgctgccgCTCTCACGgcatctgcacacactgtgACAATTTCAAGAAATGGGCCAGATAGAGTAGGAATGGTGGTGCAATGGATGATTGGTGAAGTGTCTAGGTGTGTGATTGAAGGTGGTTAGTGTGTGTCTTCTATTCATAAAGACAACACAGCCATGCAGAATCACGGTAAAGAGTCTGTATGGAGgtaagatgcttttctggtcTCAGTAGGGCTGATCACTTTCCTCCACTCCGCTAGGCTGATTAAATACACAGCCCAGGCTCTCATCGATATCAGAGCTCGCACAGTAAACAGGCCACTCTGCCATTTCTACGCTGTTCTCATTTACCATCTAGCCTGCTGCTGTTCGACTCAGAGCCAGGAAGAGCAAGAAGGGAGAAAGGATGTCCCCTACAGAATGCTGTGAACACAGTTCAGGACTTAATAGGCACttaatggaattttaaaaaaacttttgtgCAAAAGCTATAATGTATACATATTGATCAATGtctaataaaaaatgtatttttatgctGTTGAGACTTTCGTAAGCTTTAATGATATCCATCAGGGACTGTCCTTTTTTCCatatctgtctgttttcttAAT

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10908 POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215857 lncRNA downstream 42200 16074631 ~ 16081303 (-) False G182372
TU215858 lncRNA downstream 42200 16074631 ~ 16081303 (-) True G182372
TU215824 lncRNA downstream 87081 16036209 ~ 16036422 (-) True G182341
TU215823 lncRNA downstream 90316 16032976 ~ 16033187 (-) True G182340
TU215807 lncRNA downstream 123190 16000078 ~ 16000313 (-) True G182327
TU215998 lncRNA upstream 87743 16260058 ~ 16260316 (-) True G182493
TU215999 lncRNA upstream 95071 16267386 ~ 16268430 (-) True G182494
TU216023 lncRNA upstream 149870 16322185 ~ 16323944 (-) True G182511
TU216803 lncRNA upstream 605702 16778017 ~ 16778955 (-) True G183145
TU216838 lncRNA upstream 674114 16846429 ~ 16849260 (-) True G183170
XM_026929730.2 mRNA downstream 113188 16002051 ~ 16010315 (-) True atp5f1d
XM_026919604.2 mRNA downstream 133088 15971586 ~ 15990415 (-) True midn
XM_026916579.2 mRNA downstream 237635 15880230 ~ 15885868 (-) False cirbpb
XM_026916574.2 mRNA downstream 237635 15881655 ~ 15885868 (-) True cirbpb
XM_026912593.2 mRNA downstream 418265 15695154 ~ 15705238 (-) True tmem161a
XM_026922641.2 mRNA upstream 103333 16275648 ~ 16278820 (-) False micos13
XM_034308831.1 mRNA upstream 162638 16334953 ~ 16523168 (-) False celf5a
XM_034308830.1 mRNA upstream 162638 16334953 ~ 16523168 (-) False celf5a
XM_026921572.2 mRNA upstream 162638 16334953 ~ 16523168 (-) False celf5a
XM_026921564.2 mRNA upstream 162638 16334953 ~ 16523168 (-) True celf5a
TU215666 other downstream 431153 15690774 ~ 15692350 (-) True G182210
XR_004579061.1 other downstream 1543756 14553155 ~ 14579747 (-) False lama3
XR_003402957.2 other downstream 1663166 14439854 ~ 14460337 (-) False zfr2
XR_004579086.1 other downstream 1708434 14408726 ~ 14415069 (-) False rx1
TU214564 other downstream 1761856 14360936 ~ 14361647 (-) False LOC113527598
TU216001 other upstream 102567 16274882 ~ 16278809 (-) True micos13
TU216002 other upstream 103353 16275668 ~ 16278809 (-) False micos13
TU216000 other upstream 103551 16275866 ~ 16278809 (-) False micos13
TU216003 other upstream 103551 16275866 ~ 16278857 (-) False micos13
TU216998 other upstream 1073457 17245772 ~ 17342243 (-) False zgc:172076

Expression Profile