G182372


Basic Information

Item Value
gene id G182372
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16074631 ~ 16081303 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU215857
CTACTTCTTACCTCAATGTAAAACAGTTCGAAAACAGTGACTTCAAGAACTCAAAATGCAAAAGGTAACATTTCTCAGACTTGACAATAATCTCAATATGTATACACTGCACATTACAGTCATACCTGAAGGCCAAGCTCAGTGACCTTATACCAGCTCCAGTCAGTGGCCGGGGGGTAGCTGTGGCAATCGCACACCAGCACCGCCTTATCATTCTCATTAGCATTCTCAGAGCGCTTGTGAGCCACAACATGAATGAGACCTTACTTCGATGAACCCTTTAGCATTTGGCTCAGAATGAAAGACGCAAGAATATTTTCCAGAGTTGGTCTCAATCTTCGAAACGCTGCCAACAGTGAAGAGAAAACAATAAGAGCATCCAGTTCCATGAGCTTCCTAAAAATTTTATACACCCAGAGAGGGGTGCAAACCCTGTCCTGGAAGGCCTGGAGTGATTTGGTTGATTTTTGGAATAGGCCAAAGCACAATATTCCCTCTGATTAAGGTAGGTTCAGACAGAGGGCGGTAaccaagtaaaaataaatggcTTCCATTTGGCAGGCTGCCATCACATCCCCATAGTTACAACATTCACAGGTCTATTGTGCTCCAGTGAAGGAATTTCAGCCAGTGCTGGGGTGGTTTTACCCTGCCAGCTCTGGTCTACACGCAAAGCTGCACACCAGTACTATCCCTACCTCACTGGGAATCAACTAGGCTGTGTGTTTCCAACCTAATGCATAGAACTGCTTGAAATATTTTCACCCTTTCGTCACTGCTCATTTAGAATCAGTTTTTGCATTCTAGGGCTAAATAACATTACAATATTCCATATGTGTAACAGGCCAAATCTTTGAGCAGTGTGGTTAGTAAGTGTGATGAGAACATACGTGTACTCAATGTAGCGATCAGCGCCATCCTTCTTGGTGGTCTCAATAACCTTGCCGTTTTTTTCCCAGTGGTGGCCTGTGATTGGAGATGCTGGGTTGGTGAAGTTGCAGCTGAGTGTTGCAGAGGTCTGGTTGTTCACCTCTTCTGGCTTAACCACAATCACAGGCCCTGTCCCCGCAAAGGCCTGctgaaaactaaataaaatagcaCCAAACGCCCACAACAGCCACATGTTGCCTCCTCACGCTTGTTAGCTCTTTATCTCGAAGGAAACGCTGTAGTAGAAGTGTAAAACTTGCCGTGAATGTACAAAACACGAGCGACTACTAAGCGCTCGGTATTTTTCTGACTAGCCGTTCGCTCGTCGTCCTCTATTTGATCCTGACGC
>TU215858
CTACTTCTTACCTCAATGTAAAACAGTTCGAAAACAGTGACTTCAAGAACTCAAAATGCAAAAGGTAACATTTCTCAGACTTGACAATAATCTCAATATGTATACACTGCACATTACAGTCATACCTGAAGGCCAAGCTCAGTGACCTTATACCAGCTCCAGTCAGTGGCCGGGGGGTAGCTGTGGCAATCGCACACCAGCACCGCCTTATCATTCTCATTAGCATTCTCAGAGCGCTTGTGAGCCACAACATGAATGAGACCTTACTTCGATGAACCCTTTAGCATTTGGCTCAGAATGAAAGACGCAAGAATATTTTCCAGAGTTGGTCTCAATCTTCGAAACGCTGCCAACAGTGAATTTAGCTGTAGCCCCGAGTGGCAAAACATGTCCTATGGCACGGACACAGGGAACtcatgatcaaaaaaaaaaacaacttttttttaaaaaattaatctttCTCAGCCGAGTTACTGGCGAGCAAGTGTCCGGATGTTTCCGCTCCCCTTTTGTTCGGTGTGGATTTCTGCACCACGGTGCTGGAAAGTTATAATGAGCTTACACTAAATCCTGTAAAGACTGAGGCCTCCCTGAAAGGTACAATGTCCACCAAACTGGTTAGATTTCTTCACTGTtaagccagtttttttttgttttgttttaatacagTACACACTTGGTTAATAACAGCAATTTGGTGAAACAGAACAGTTtgaaaaaaacaggttttatgTTTAACCTGATATGAGAAATTTCCAAAAGCCTACAAGATAGGGGCTGATAGAAAACTGGTCTAAACCGGTCTAACcatgtatgtaaatattaattaaatgcCATTAGTAAAACATAAAGTGGTGGTTTTAAAGGGCTGTAATGTAGGCAGCCACAAGGCGTGCAAAAGCAAGACTACCCCCTAACTTCACAACATTTCCACAACCTAGAAATGATCAACTTCTCTAAACCACAGAAGAGCATCAAGTCTCTCCCTAACTGTGAGCTAAATTAGTTTAGTGGGTTCATTTTGTGAGTTTGTGGGTTCATTTAATTCGTGTTATACTTGGCGTGTTGCTTTCAGGAGCcgaattaaatcttttttaagcTAATCAGGTTAACAGCCGGTGGGTTAGCGAGACATTTTAACTAACAATTATTTAGTCACCTTAGTAAACGCGTCGACGATTAATATTCATCATTATCAAGAACATTAATGTTGGAACGACActagtagtttaaaaaaaagtaaaaataagaattaactaataaataataaaaaggtgTCGCTAACCAAGTTGCTAACTAGCAAACTGCTTAGCTAGCTCACGCGAGCGACTTTGCTGGAGAGGAAATCCTTTAATTAACACTGAGAAACCTTTAAAGCTCCATGAAACTGTCGTATCTAGTCTAATATGTTCCATATAACTCGTGTACAATAAAAATCACTCGACgcaatgtttatttaaaacaaatttaaacagtTAACAGCACGTTTTCGCGAAGCAAACAGGCTACAGTGTATAGCATTCAGTGATGGCTGGTCAGCGATAAGAAAGACATCAGTCTTACCTGTCCCCGCAAAGGCCTGctgaaaactaaataaaatagcaCCAAACGCCCACAACAGCCACATGTTGCCTCCTCACGCTTGTTAGCTCTTTATCTCGAAGGAAACGCTGTAGTAGAAGTGTAAAACTTGCCGTGAATGTACAAAACACGAGCGACTACTAAGCGCTCGGTATTTTTCTGACTAGCCGTTCGCTCGTCGTCCTCTATTTGATCCTGACGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215857 False 1279 lncRNA 0.45 3 16074631 16081303
TU215858 True 1783 lncRNA 0.40 3 16074631 16081303

Neighbor

gene id symbol gene type direction distance location
atp5f1d atp5d coding downstream 64316 16002051 ~ 16010315 (-)
midn midn,LOC108271022,LOC103463687,LOC102230511,LOC106954193,LOC100691436,LOC102311033 coding downstream 84216 15971586 ~ 15990415 (-)
cirbpb cirbp,LOC108271114 coding downstream 188763 15880230 ~ 15885868 (-)
tmem161a tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814 coding downstream 369393 15695154 ~ 15705238 (-)
tmem221 tmem221 coding downstream 399401 15671606 ~ 15675230 (-)
polrmt polrmt,LOC107569035,LOC101483880,LOC107719647 coding upstream 42200 16123503 ~ 16172315 (-)
celf5a celf5 coding upstream 253650 16334953 ~ 16523168 (-)
rxfp3.2b LOC108270668,LOC107655214,LOC108435892,LOC107719591,LOC107729713,LOC107586455,LOC107596869,LOC107675915 coding upstream 470994 16552297 ~ 16554351 (-)
creb3l3a LOC108271409,LOC108435893 coding upstream 477403 16558706 ~ 16569245 (-)
btbd2a btbd2a,LOC108271001,LOC108435919,LOC107719589,LOC107586379,LOC107675907,LOC107655211 coding upstream 501997 16583300 ~ 16593189 (-)
G182341 NA non-coding downstream 38209 16036209 ~ 16036422 (-)
G182340 NA non-coding downstream 41444 16032976 ~ 16033187 (-)
G182327 NA non-coding downstream 74318 16000078 ~ 16000313 (-)
G182325 NA non-coding downstream 76734 15997696 ~ 15997897 (-)
G182303 NA non-coding downstream 95915 15904278 ~ 15978716 (-)
G182493 NA non-coding upstream 178755 16260058 ~ 16260316 (-)
G182494 NA non-coding upstream 186083 16267386 ~ 16268430 (-)
G182511 NA non-coding upstream 240882 16322185 ~ 16323944 (-)
G183145 chaf1a,LOC107679837,LOC107717976,LOC107593329 non-coding upstream 696714 16778017 ~ 16778955 (-)
G183170 NA non-coding upstream 765126 16846429 ~ 16849260 (-)
G182210 NA other downstream 382281 15690774 ~ 15692350 (-)
lama3 LOC108270685 other downstream 1494884 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 1567021 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 1580772 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 1614294 14437360 ~ 14460337 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 193579 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 1164469 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 1261512 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 3234816 19316119 ~ 19316374 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 3613959 19695262 ~ 19697709 (-)

Expression


Co-expression Network