G182494


Basic Information

Item Value
gene id G182494
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16267386 ~ 16268430 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU215999
AGCTACTGTCATGTTCACCATGGGTAATTtcccccagaccaccagaggtcACTTTTACTCACTGTTGCATCAAGAAATTCCTGCAGAGGGCAGAGCAGTGTGGTTGTAATAAAAATGGTGCACCTCTAAGAGCACATGGAGGTGAAAAGTTTGGAGAAGGTCTTTATTGGCAAAGGAAGGGCTTTCACCCATTCAGCTCAAATTCAACCCTGAAGATGCAACTGGTTATCAACCTTCTTGTACTGCAATTACAGCTACTTTGCTGCTTCTACTATTGCTTTGCTAAGCCTTTGCAAGcagaagaaaaattaaaaaacagtaaAGATGAGTTGTCCTCTTGCGCCCTTCAAAACTTAAAAGCCATTTATCAAGTTTGGGCAGAGCTGAATGGGAAAACCTAAAAAACTTGACACTCACAATTTTTGAATTTCTTCCTGTGTTGTCTGCCCCATGTCCTTCCTTGTTTGTACACACCTGATTTGTGTTCCTCTGAATAGTtaccctatttaagttctgtgttttcctccTTAGTGGCCCAGCATTACATGTTGTATAGTCACTGGTATGTTGTATTTGCACTGTAAGtagcttttatttttgtcatatttcctTTTTGCCCTGTCTTGCTGTAgtctaatttttgtttttttttctgccttttgtttgtttttttagttgttcATTATTAAAGACACACTGTGCTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215999 True 705 lncRNA 0.39 2 16267386 16268430

Neighbor

gene id symbol gene type direction distance location
polrmt polrmt,LOC107569035,LOC101483880,LOC107719647 coding downstream 95071 16123503 ~ 16172315 (-)
atp5f1d atp5d coding downstream 257071 16002051 ~ 16010315 (-)
midn midn,LOC108271022,LOC103463687,LOC102230511,LOC106954193,LOC100691436,LOC102311033 coding downstream 276971 15971586 ~ 15990415 (-)
cirbpb cirbp,LOC108271114 coding downstream 381518 15880230 ~ 15885868 (-)
tmem161a tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814 coding downstream 562148 15695154 ~ 15705238 (-)
celf5a celf5 coding upstream 66523 16334953 ~ 16523168 (-)
rxfp3.2b LOC108270668,LOC107655214,LOC108435892,LOC107719591,LOC107729713,LOC107586455,LOC107596869,LOC107675915 coding upstream 283867 16552297 ~ 16554351 (-)
creb3l3a LOC108271409,LOC108435893 coding upstream 290276 16558706 ~ 16569245 (-)
btbd2a btbd2a,LOC108271001,LOC108435919,LOC107719589,LOC107586379,LOC107675907,LOC107655211 coding upstream 314870 16583300 ~ 16593189 (-)
si:dkey-110c1.10 si:dkey-110c1.10,LOC108270951,LOC108430112 coding upstream 381713 16650143 ~ 16668321 (-)
G182493 NA non-coding downstream 7070 16260058 ~ 16260316 (-)
G182372 NA non-coding downstream 186083 16074631 ~ 16081303 (-)
G182341 NA non-coding downstream 230964 16036209 ~ 16036422 (-)
G182340 NA non-coding downstream 234199 16032976 ~ 16033187 (-)
G182327 NA non-coding downstream 267073 16000078 ~ 16000313 (-)
G182511 NA non-coding upstream 53755 16322185 ~ 16323944 (-)
G183145 chaf1a,LOC107679837,LOC107717976,LOC107593329 non-coding upstream 509587 16778017 ~ 16778955 (-)
G183170 NA non-coding upstream 577999 16846429 ~ 16849260 (-)
G183166 NA non-coding upstream 643288 16911718 ~ 16952993 (-)
G183276 NA non-coding upstream 920931 17189361 ~ 17192232 (-)
G182210 NA other downstream 575036 15690774 ~ 15692350 (-)
lama3 LOC108270685 other downstream 1687639 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 1759776 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 1773527 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 1807049 14437360 ~ 14460337 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 6452 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 977342 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 1074385 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 3047689 19316119 ~ 19316374 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 3426832 19695262 ~ 19697709 (-)

Expression


Co-expression Network