RNA id: XM_034308830.1


Basic Information

Item Value
RNA id XM_034308830.1
length 7096
RNA type mRNA
GC content 0.43
exon number 12
gene id celf5a
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16334953 ~ 16523168 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgcgagtgtatgcgcgtgcgtgcgtgtgcgcgcgcgcgcgctgtCATTATTGCTATCCAGTCTGCTCCGCGCTCGCGATGGCCAGATTCATTTCGCGTGAGGCAGGAAGGCAGCAGCGCTGTCCCGCTCCCGCTCCGGTTCCCGCTCCCGCTCCCGCTCCCTCACGCGCTCCGGTTCCGGTTCCGTGCAGCCTGCTCGCGCCTGGCCCCGGGGCAGCACCGAGCCCACagcctctcctcttcctcctcctcctcccctacCAGCACCAGGTTCTTCCCGAACCCATGAACGGCTCCGAGTCCATCTCCATCCACCCGGAGAGCGGCACCATGAAAGACCAAGACGCGATCAAACTGTTTATCGGGCAAATCCCGCGCAACCTGGAGGAGAAAGACCTGAAGCCACTGTTCGAACAGTTTGGGAAAATCCACGAACTGACAGTGTTAAAGGACCGATACACCGGCATGCACAAAGGTTGTGCGTTCCTCACCTACTGCGCCCGCGAGTCAGCCATCAAAGCCCAGAACGCCCTCCACGAACAGAAGACGCTGCCAGGGatgactCGCCCCATCCAGGTGAAGCCGGCTGACAGTGAAAGTCGTGGAGACAGGAAGCTGTTTGTGGGGATGCTGAACAAACAACAGACGGAGGAGGATGTCTATCGCCTGTTCGAGCCCTACGGAGTCATCGAGGAGTGCACTGTGCTAAGAGGTCCTGATGGGAACAGTAAAGGCTGCGCCTTTGTTAAGTTCTCCACACATGCTGAAGCTCAGTCTGCAATCAGTGCGCTACACGGCAGTCAGACCATGCCGGGTGCCTCATCCAGTCTGGTGGTCAAGTTTGCTGACACAGACAAGGAGCGCACCATCCGGCGCATGCAGCAGATGGTGGGCCAATTCGGCATCTTTAACCCGGCCATCGCGCTGCCCTTCAGCACCTACAGCAGCTACGCACATGCGCTGATGCAGCAGCAGGCGGCCCTCATGGCCGCGAGTCATGGTGGCTACCTGACACCCAGCGTGGCGTTCCCGGCCACCCAGATCCACCAGATGGGGGCGCTGAACATCAACAGCCTCCCTCCCACCCCCATGACCCCGGTGTCGGGTGAGTTTCATCAGCCTCTGGGCCTTAGCTCACCACCCGCAAACATCACGTCTTCAGCCGTGCCCAGCATCGTCACTCCAATTGTCAACGGCTTCACTGGCATCCCTCACCAGCCCAACGGCCACCCAGCAGTGGAAGCTGTGTATGCCAACGGCCTGCCCCCTTACTCCACCCAAAGCCCCACTGCTGCAGACACACTGCAGCAGGCCTTCACCGGGGTGCAGCAGTACACAGCGATCTATCCGGCGACCACACTGACCCCTATTGGCCAAAGCTTGCCTCCACCACCGCAGGtcattcagcagcagcagcagagggaAGGCCCTGAGGGCTGCAACCTCTTCATCTACCACCTACCACAGGAGTTTGGGGATAATGAACTCATGCAGATGTTCCTGCCCTTTGGGACGGTCATCTCCTCTAAGGTGTTCATGGACAGAGCCACCAACCAGAGCAAGTGCTTCGGCTTTGTGAGCTTCGACAACCCAGCCAGCGCGCAGGCCGCCATCCAGGCCATGAACGGCTTTCAGATTGGCATGAAGAGGTTGAAAGTGCAGTTAAAACGGCCAAAGGACGCCAGCCGCCCCTACTGACACAGCCCCAAGACACATGGAGCTCTCTGCTacagcacagGTTTTGAAAAGTGAAATCTCAAAAGgagcttgatttttttctttaaaaataaataaaacaagataaaaaaaaagaagatgaaagGGTTTTTTTCGAAGACATATCAGCATATCCTTATGAAGACGTTCATCAGAGCGAAGAGATGCTGGAGAAGCGGCACACTACAGACAACCTACAAGCAGCACAGAGTGAGAAAGTCAAAGCTGGATCATGGTGGGAAATCCCAAAAGACAAGAACTTTTAAGCTACAGAACTTCTCTCGCTAAGACTGAGTCGACAAATAcgcaacaaacaaaaaaaagagcagcaaGAACAACATAGATTtctatatacatattatatacacgTGCTATATTATGGAAGAGGCGCTTCCAGCTTTTAATGATACTGGACAAATGAGGGTTAAAACTTGAAAATCAAGGAAAAAGGccgtggagaaaaaaaaaagctctttttaACCACTGGCAgaccttctttctctttctctgtttccttTCAACTGTCTTCATGTCTCTGAGCAAGCGCAGGACTTTTGGCCTTCTGTGGTCGCGGAGGTTTCCAGAGGTACAGTGCAACTGAAAAATCTTTCACTCCAAGGGACCAAAGGACCAAATATCTTTTTATTGTTCGACAGTAATATATAGTATTAATGAGGATACTAATACTACAAACTACTACTAATGATGTtacatgtttgaaaaaaaaaaatctaagaggAAATACTTGCTTCAGGTTGGAAGAGGAAAGAGATTttgatttcttttccttttacatttataactaCTGGGTTTCagaatatttaaacaaaatagaaaaaaagaagaagaaaaaaagtattttaaaagcTATACTATTTTAGAGGACTAGAATATGTGGATGGTGAAAGGTGTGTTCAGTTACTTCTCATCAGTGGAGATTTAAACTCTTTATCTGGGATGTGTGGCACCGACCCACTGCCTTTCAGCTCCGCGTCTGACCTTCACATTCACTCAGACATTAAGTTTAAGCACACGTGCCAGAGAAATTACACTCACTGAACTGGTCAAAGTTCCAGTTGCCTTTCATTTAGCAAAAGATCCTGAGTAGCAACTACATTTTCTGGGGACGAACCACAGAGGCATAATGAAATGCACACAATTTTCAGATTGACACAAATATAATCAATCAGTTAgaacttgttttatttctgaagtttgcttctttagttttgaaCTGGAGCTACTGATACCAACATTACACTCCTAGCTCCTTaacactgtttattttgttgatGAAAACTTGACTGTTTTCCATGATATAAACTAAACAATAGGTAAATAATAATTCACCCTTTTACTCAAAATATAGGACAAAATAACGTGATGAACATGTCAGAACTACTCAGCTAGAGAAGCTCTTTTCCCCGTCTTAACACACTCATGTTGCAAAGCCGTTATACAAGCAAACTAAACCATGCTGTGTGCTAcagggaaggagagaggaaaTTGCTGCAGTCGTACGCACTGGTACACAGGATTAGCAGGTCTGAGCAAAATTTCTAGCCCAACTACATTGGGCTAGacattttgctgtaaaaaaaaaaaatgcacaacaagACCTGAAACCTGCCCAAAACGTTGCCACTATATGATACAAAAGTGACAATACAGTTTAAGTTTGCTTATTTATCAGTCGGAAAAAGCTCCACAAGTAATtgttaaagtaaaaatgaataaaaaccctCCTTTTACTTCAAAACCTCTTAATGTCCCAAAAAAGTACAGTCTTTGATTCTCATTTAAGACTAAGAGTGTTAGTGTACAGTTCCCACTACAAACAAatactgtctgcacttacactttccctttgtttgccatagccTATTTTTTGGAAATTGCTTcgatttaattctgatttgaTTGATCTTGGTGGCCGCAGAATGTTTTAAATgaccccccaaaaaaaccccaaacaacaagaacaacaacaacaacatcagcaacaacaaaaaagccaCCTTCAGACTTGCTTTTTCTGCTTATAACCTGTTTCAAAACTTGCCTAATTTGGTGTAAAAACATTAGGCTAACATTAAAGCGACTTGATTGGAAATGCTGTCCTGCACTAGCATGATGTTATTTTGTgagaaaatgcagctttttgtaatttttttccctagCTTGAACTAGCATACCTGAAGACACCTCATAAAACGCCgaagttattttatttgaacttgTGTGTTTACTTCCCTGCTGAGTGTCACAGACTAAGTCGTAGCTCTATGATAGCTttcatttaacaaacaaaaggTGAAAACCTTTACCAAGCCTGTAATGTGcatttgtaaaacattttaatgttccATTTAAGACAAAATTAAAACTTCATCTTAAATGGCACACTAAAAtttcaaagtaaaataaaattttaaaaaattaagataCTGATGTGGCAAAAACAGCTtaaaaaattagtttaaaagAGAATATAGATGCTTGTTCTGTTTTAGTTGTCTAAAATAGCTGTTTTTCATTAACTACATCTAAACAaaaactaattaataattaaagtatggcaaaagattTGGCAAAATTACCAGAAGCGAATGGCCAGCAAACCTTTCTTTGTTATTTGACATTGTGTTCATTTTAGTTTCCTTTAACACCTCCATCAGCAGCAGGCACACTGTGTGAACATGAGCATTTTATCTAAGCCTCTATATTACTGAAATGTTGCCTAATGTGAGTTCTCGAAAAATGACACTGACCCTAGCACGTCTTGAGCTTCCCAGCTTAGCCGACTCTTACAGTATTCTGTCCTACTCCTTATAGTTTCCTAAACTCTAAAGCCTCAAGGGTCCTTTAACAGGGATTATGGTAATCCAGGCACCTACGTCCCAACACCCCACATCATTACCATACAGCTTGTATTGATCAAATGGCCAGCCTCAGCCTCGGGGCCGCTCCTGCACAATCAATTACACATGACTGAgttcatttttttacactttatataaCAAAAGCTTGAGACAAGCTCACCGCGGGATTGCTTTATTGATGCAGACCAGACCAATGTTTAATAATACAGGTCAGAAATGTCATTAGAAAAATTAAGATAGTGATGAGGCACATCTTAAAGCTGTGAAAAACAGTTTAGAGAGCCTGAAGAATGAGTGCTATTAGTAAGGCCACAGTGAGGGCAGTTTAAAGGGCACAGACACCGAAGCCATGATGTACTTACAGCAGCTGCTGGTGTTCTGATGAatagcacgcacacacacacacacacacacacacacaagcacacacagagacactctGTTGACAAAAGGTCAGAGGATGGAACTGCATTCCTTTATAACATGGCGAACGTCCACTGAGTCCCTCATAAAGAGCTgaaaaaggtgtttttttttttcttattcacaCCAAATCTcatgttttgctttattttcatcATCTGTCTTAAAGCTCATGTCACCCATTGATAATTACTCATATATTATCAGCTTTGTGCTTATAGATTTTGAACTGTATAATATCCTTATGCAGATTACAGAGTGCAACAACTGacaacaatagaaaaaaaattaatttcattttcatttaatttaattttccacattttgacCCTTTTGGCAAACCCAGAAATCTATCTAAGCTATCAGGAGCGGCtcgtgaccatagattttggtggggcagaacaacattaataatatagTCTCAAACCAAATTAAGTTGAAAGGCTATCACAGTTGACTTATGccataggctactatctagtgaatttttagagtaatagGCAGTTAAGAGTTGATAATATACgttcatccagcatacagtctagcagtaTACAGTCTAGTGCTTAACCTGAAAAGACCTGGAACTAGCCCAAAAAAATCAGGCATTGGAAAAGCGAGACACATTTATCTTCGTTTTTTCAGCGTTTGTGTGGAAAACAATGTCACcgtggtgcacacgcatttctgaaGTACAGACATTATCCTCATGATGTCCCATATCCCATAtcccataatccccctttccctctcccaatctttgcaatatatcttacaatagaaagaaatggttctgtatatCATAGACACAATGTCCTCACTTACACTTTGTCTTTGGTTGCGgaaatttattcaatttaattctgattaactGCTATCTCGGTGGccacagaatatttttaaactagcccaatttggcaaacctgtcattaactgtcctgtttgCCGCTCATCCTCCAATAGTTTGATTCAGCGTGATTCTTTACCCACTGAGCCTCTATTAGCACTTGATGTAATTcccattttgaccactaggtgcaacaATAACTCTATAGAAGCTAAGTGATTGCACAATAGCTAGAAATATTGGCTTACATCTGTCAAAGagcaacatatttttaaatcattggtcactcaggagaggtaattagtatttcaatgaaatttaaaatgtatggagttgtgaatgaagAATTTAAGATAATTAATGTTTGCTGAACGGTTGATATAGTGGAGCTCTGCCTAACCTGCCCCTGTGGACGAGCCGCCACTGATCGCTATGTTTTACATTGGAATTGGAAACTCTGGAATTGAAACTTGGGTACCATGATTGATTTTTATCTGGGTATAATGCCATTTTCCTCCGGACCTCTGTTCACTTCATCTCTTCCTGCCCGGTAATAATGAATGACAACAtggtaatatactgtacacatacGCAGCCCTCAGGCATCCATGCTCTAATAACCCTGCGTCCTCTCCAAATCTCTACATTCCAGGCATgtgaattattaaaatcaaattaaatgtgGCCCTCACATAACAGCAGGCctaatgcaaattaaaaatggCAACTCACGCCTGAAGTTTAATAAGTTTGAGACATGATATCATTACAGCGAGACGAGAAAAAGATGAGAAAAACCAATAAAATGGAGTAAACATGGGGGTGATTGAGGATGAGTGgatgagtgtgttagtgtgacaATACAGTTAGTTAGTTAAGCTTATCATgttttgctgtttaaaaaaagggcTGCACAGGCTCTGTTGCACTGCTCATAGTTACTAGTGCTCCAAATCACCAGCATTTCTCATTTGTGTTCTCATTCCAGCCATATTCATGTTCACAGTTGAGTTTTCTCACACCATGATGCCCAGCGTGATGTTTGAGCATGTTCAGACGTGGTGGTGGGTGGGCGTGGGGACGGCGGGGCGTAAAGTATATTAACGGTACTACTCGTATTAACAATAtgattctttaattaattaattacctaTGGTTTGTATGCTAAGGAAAGTAGCTTATTATAGATCTAAAATGTGTATATTAGGGAACATGAGCACAGGAACCTTT

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216023 lncRNA downstream 11009 16322185 ~ 16323944 (-) True G182511
TU215999 lncRNA downstream 66523 16267386 ~ 16268430 (-) True G182494
TU215998 lncRNA downstream 74637 16260058 ~ 16260316 (-) True G182493
TU215857 lncRNA downstream 253650 16074631 ~ 16081303 (-) False G182372
TU216803 lncRNA upstream 254849 16778017 ~ 16778955 (-) True G183145
TU216838 lncRNA upstream 323261 16846429 ~ 16849260 (-) True G183170
TU216840 lncRNA upstream 323261 16846429 ~ 16849260 (-) False G183170
TU216841 lncRNA upstream 323261 16846429 ~ 16849260 (-) False G183170
TU216833 lncRNA upstream 388550 16911718 ~ 16952993 (-) True G183166
XM_026922641.2 mRNA downstream 56133 16275648 ~ 16278820 (-) False micos13
XM_026924607.2 mRNA downstream 162638 16123503 ~ 16172315 (-) True polrmt
XM_026929730.2 mRNA downstream 324638 16002051 ~ 16010315 (-) True atp5f1d
XM_026919604.2 mRNA downstream 344538 15971586 ~ 15990415 (-) True midn
XM_026916574.2 mRNA downstream 449085 15881655 ~ 15885868 (-) True cirbpb
XM_026929893.2 mRNA upstream 29129 16552297 ~ 16554351 (-) True rxfp3.2b
XM_026929882.2 mRNA upstream 35538 16558706 ~ 16567911 (-) True creb3l3a
XM_034308981.1 mRNA upstream 36246 16559414 ~ 16569245 (-) False creb3l3a
XM_026925243.2 mRNA upstream 60132 16583300 ~ 16593189 (-) False btbd2a
XM_026925236.2 mRNA upstream 60132 16583300 ~ 16593189 (-) True btbd2a
TU216003 other downstream 56096 16275866 ~ 16278857 (-) False micos13
TU216001 other downstream 56144 16274882 ~ 16278809 (-) True micos13
TU216002 other downstream 56144 16275668 ~ 16278809 (-) False micos13
TU216000 other downstream 56144 16275866 ~ 16278809 (-) False micos13
TU215666 other downstream 642603 15690774 ~ 15692350 (-) True G182210
TU216998 other upstream 722604 17245772 ~ 17342243 (-) False zgc:172076
trnav-uac_1 other upstream 2786843 19310011 ~ 19310083 (-) True trnav-uac_1
trnav-uac_2 other upstream 2788643 19311811 ~ 19311883 (-) True trnav-uac_2
trnai-uau_3 other upstream 2789017 19312185 ~ 19312256 (-) True trnai-uau_3
trnav-uac_3 other upstream 2789204 19312372 ~ 19312444 (-) True trnav-uac_3

Expression Profile