RNA id: XM_026930262.2


Basic Information

Item Value
RNA id XM_026930262.2
length 4397
RNA type mRNA
GC content 0.52
exon number 21
gene id rc3h1a
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12752078 ~ 12782535 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCTGTAGTTTTAGCCGAGCTGGTGCCGCTTTGCTGTAGCGCGCGCACATCCCCGTCGAGATGGTGactgaaatgaaatcatttaatttctCTATAGACGGCTGAAGAATGGcacaatttaaacaaatattGTTATGTATTCAGCACTGTGTGCTACAAGTCCACGATGCCTGAAGATATTTAAAACCACCGTTCAGAAGAGTGATTTGATTCCTGTGGAATCTATACAGCATTtggcctctgtttttttttattattattttgctgtatttgtttttaacaaaacGTACCCACGTTTGTGAGAGCGTGGATATCTGAACGTCACGTCGAAGACATCCTTTTTGGTCAACGATGCCCGTGCAAGCGCCGCAATGGACCGAGTTTCTGTTGTGTCCCATCTGCACACAGACGTTCGAGGAGAGTGTGCGCAAGCCCATCAGCCTGGGCTGCGGTCACACCGTCTGCAAGATGTGCCTGAACAAGCTGCACCGCAAAGCCTGCCCTTTTGACCAGACCACCATCAGCACAGACATCGAGCTTCTGCCCGTCAACACGGCGCTGCTGCAGCTCGTCTGCCCTCAGGTACCCAAGTCTCAGCCCGTCACCTTAGTGAAAGGAGTGGAGGACATCAAGCATTATGATGAAGCACGCACGTGTGTGGAGGAGCTGGCTCTCTACCTCAAACCCCTCAGCAACACCCGAGgTGTAGGGCTGGGCACTGCGAGTCAGAGTCTCCTCAGCAGACCCATGCAGAGGAAGCTGGTGACCCTGGTGCACTGCCagctggtggaggaggagggtCGTATCCGGGCCATGCGTGCCGCTCGCTCTCTGGGTGAACGCACAGTCACCGAGCTCATCCTGCAACACCAAAACCCCCAGCAGCTCTCTTCCAACCTGTGGGCCGCTGTCCGAGCTCGTGGCTGCCAGTTCCTCGGCCCTGCCATGCAGGAGGAGGCTCTGAAGTTGGTGCTGCTGGCGTTGGAGGATGGTTCGCCTCTGTCCCGCAAGGTTCTGGTTCTGTTTGTGGTCCAGAGGCTGGAGCCACGCTTCCCTCAAGCCTCTAAAACCAGTATAGGGCATGTCGTACAGCTGCTGTACAGAGCCTCATGTTTTAAGGTGACTAAGCGAGATGAGGACTCATCCCTGATGCAGCTAAAGGAAGAGTTCAGGACGTACGAGGCTCTGCGGAGAGAGCACGACTCCCAGATCGTGCAGATTGCCATGGAGGGAGGCCTGCGCATCGCCCCTGACCAGTGGTCCTCCCTACTCTATGGGGATCAGTCCCACAAGTCCCACATGCAGTCCATCATTGATAAGtTGCAGACCCCAGCCTCTTTTGCTCAGAGTGTACAGGAGCTCACCATTGCCCTGCAGAGAACAGGAGACCCAGCCAACCTCAACCGCCTCAGACCGCATTTAGAGCTGCTGGCTGACATCGACCCGAGCCCAGATGCCCCTGCCCCCACTTGGGAGCAGCTGGACAAAGGGCTGGTGGCTGTAAAGACAGTAGTGCATGGTCTTGTGGACTTCATCCAGAACCACAGCAAGAAGGCTGGAGACCCACAGCAGGCTCCTCAGCACAGCAAGTACAAGACGTACATGTGTAGAGACATGAAGCAGAAGGGAGGGTGTCCCAGAGGAGCCAGCTGCACCTTTGCCCATTCCCAGGAAGAGCTGGAAAAGTTCCGTAAGATGAACAAGCGTCTACCTTTGAGGAAGCCCCTCAGCCAGTCGCTGACCCAGCTTAACGACATGGACGTAGCTTGCAACCCGGGCCTTCTGTCTGATGAGGGTTTGGTTGTGGAGGGTCTGGCCCACAAACCTGCCATGGTCACTAATGGCATTCTACCAGTGCCACCTGGATCAGAACTCACACATCTGGTCTCCCGTGGATCAGCAGCAGCCTATGACACCTCTCGCAAGCTGGGAAAACCAGACACAGGCAGCCTCAGTGCTCCTGAATCACCACCAGACTCACTGGACTCCATTCCTAAAGTGGTGATGCCTTCAGCTTCTCATCCTAGAATCCAGAGGGAGAGTCTGGCTGGACACACACTGTCTGCTGTCTCCAGAGTTCCCCAGATACCGCAGTACCCTCCTCATCAGCCTGAGGCCTATTACCCAGAATCCAGAGTACCACCACCTGCCTCCCAATACGAGTCCTCTCAGTATCCCACTGgCAACTCATACGCTTATCAGCACTTGCAGCCTCGCTACGCTCGCCCCCCAGTTGACCCCAGCTTGGTGCCCTACCCAGACCCCTATCCTGTGTCCTACGCCCCAGAGCGCCAGTACCCTGCTCAATCTGACCCTCGCTACAGCTATCACGACAACCGCCGCCATGCGCCTTATGGAGGCCACCCTCCACTCCCACCATATGCTCGAGATGAGCTGGGCCACAGGAGTCCTGTCCCTATGGAGATGCCCCCACCACCACAGGCACCGACAGCAGGAGCCTCATCCTCATACCTCCCAGAATCACGGGACAGATATGGCCCTGAGAGCTACAACCACTCTGGCCACGGCAGGCCTTACAGCGGCAGGaGTGCATATGCCCGGCCACAGCCCAGCCTGGACTACCTGCACCGTCGGAAGAAGGAAATCATGGCCCAGTTGGAGGAGTGGAAAGTcgtctctcctcctccctttGCCTCCTCTCCAAACCTGGCCCACTCTTATGACCCCAGTTTTACGCAAGAGGTCAGGGGGCAAAACCATGGCCAACAGTATATTGGAGAGAACCCTCCAGAGTTCCAGAATGTCAGAGAACCGGAATACGCGGCTTCGTACTCGCCgtggtcatgtgacactttTGCCCCCTACATCGGCACCAAggatatgaagtccaaagactGCCCAGCCACAGGCTACATGGAGATGCAGACTATAGAAAAAAGCCTGAGAGATCCGGCTCTGGAGCTGCAGCGTCGAGCGGCGGAGGTCAAAGATGATGACCCGATCATCCCATTTGGCTCGCTGCCCACCGTCTCTCGCTTTGGAGCCATATCTCGCACGTCCAGATCGGGATATCAGCCTGCTGGACTTGTTCCAGGCCCCCCAGCCAAACACTCTGCAAGCGCAGTTGATTACAGCTATAGGAATCATGGAGGATGGAATGAAGCCTCTTACACCCAGCACCAAATCATGCCACCTCAGGGACATTTCAGTGAGCGTCTGCCCCCTGCTGCCCAGGAAAGGGAACAGCTGAAGATGGAGCTCCAGCGGGTCAACCAACAGATTACCCAACAGACTCGCTGTATGGAGAGGGAACCAGGTTCAGCAGCTGGCCAAGCTGCTCCAGTGGAGTGGTCAACGGCTAGTGTTTCCAGCGAGCAGCTGAGCCTAGAGTTGCAccaggtggagagagagatcGGCATGAGGACACGTGAGATGGCCATGGAGGCGGCTGGCATGAAGTACAAGCTGGTAGCAGGAAGTGAAAATGGACAGGGCGAGCACAATTTACAGCGGGAGGATCACCACCTAGCCCTCAGTGAGGGATCAAATGGTTCCAGTTCTGTGGTGCAGGACTGTGGTATGGGCAGCACCAGCATGTCCTCCCTGACCAGCAAGACATCCTCACTCAGCCTGTCGTCTGAACTGGTGGGCAGCAGCCCGGACCTGACCAAGAATGGGGTGGCTCACGCATGCTCATAGATGGAGTGGGAGGGGCTTCCATGTGGACCAATGAGTGAGTGTTAAACAGGAAGTCGAGCGTCAGGCACACTTGCTCAGAGAAGCTCAGGAAAGACTCCTCActgacacaccacacacacacaaacacaggtgtTAGTGTTCAGCTCATAGACATAGGATGTTGTTTCAGAATTGATGATCATGTACGAGTCCCGATGGgagtgtttttgtctttttctttttgttcacGCTGAACATGCTCACTGCTTGCAGTcacctgttttttcttttttttccattgcatCTAGCTGTTCTTGCATttatgcatattattattttatttttttaaatgtgtaaatccTAACCTTGGGAAAATGTAATTGCTTTTGATTACTCTCAGGTTAGCTTATAAAAGATTGCTTAAATTAAGGTACACAAACCAACTGCAACATGAGTAAGAatttaagggtttttttaaatatatatatattatactccATTAAGGAATGTTTAGAACTATTTCTCCAATGTGGATTTAgctgaaccttttttttttctttgttaaaaattcACTGTGTGAAATTTTGGATTGCATTTTGTATAATACAATTGCTTTTCTTCATGGAATGGGGAAGGAAGGGGAACTGACTGGAAGGCTGAATTAgataaaacatgaaattatttaaaagtgtaaCTTAATGTGCAACAATAATTCTGTACTGGCAGGGATTGTGATTAAATGATATTGTAAACAGCT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K15690 RC3H; RING finger and CCCH-type zinc finger domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213686 lncRNA downstream 4534 12747334 ~ 12747544 (-) True G180541
TU213555 lncRNA downstream 126507 12623102 ~ 12625571 (-) True G180434
TU213549 lncRNA downstream 132427 12578718 ~ 12619651 (-) True G180429
TU213731 lncRNA upstream 99120 12881655 ~ 12881911 (-) True G180574
TU213797 lncRNA upstream 194052 12976587 ~ 12980695 (-) True G180626
TU213802 lncRNA upstream 199477 12982012 ~ 12984113 (-) True G180629
TU213798 lncRNA upstream 204252 12986787 ~ 12987523 (-) True G180627
TU213800 lncRNA upstream 207238 12989773 ~ 13048700 (-) True G180628
XM_026930383.2 mRNA downstream 7320 12736065 ~ 12744758 (-) True serpinc1
XM_026930485.2 mRNA downstream 75179 12666723 ~ 12676899 (-) True dph5
XM_026930292.2 mRNA downstream 256410 12488208 ~ 12495668 (-) True dbt
XM_026930505.2 mRNA downstream 268027 12479396 ~ 12484051 (-) False lrrc39
XM_026930504.2 mRNA downstream 268028 12479396 ~ 12484050 (-) True lrrc39
XM_026930295.2 mRNA upstream 784 12783319 ~ 12802687 (-) True stil
XM_026930825.2 mRNA upstream 64316 12846851 ~ 12849646 (-) True klf2a
XM_026930882.2 mRNA upstream 160891 12943426 ~ 12946820 (-) True fam32a
XM_026930799.2 mRNA upstream 241866 13024401 ~ 13032544 (-) True LOC113536692
XM_026930682.2 mRNA upstream 255455 13037990 ~ 13046848 (-) False lpl
TU213621 other downstream 31602 12717361 ~ 12720476 (-) True G180485
TU212758 other downstream 1248116 11496074 ~ 11503962 (-) False LOC117598430
TU212749 other downstream 1336638 11409092 ~ 11415440 (-) False G179803
TU212647 other downstream 1505773 11243975 ~ 11246305 (-) False nppc
TU211855 other downstream 2936853 9813892 ~ 9815225 (-) True G179035
trnam-cau_27 other upstream 453868 13236403 ~ 13236475 (-) True trnam-cau_27
TU214009 other upstream 457214 13239749 ~ 13243162 (-) False rpp21
TU214564 other upstream 1578401 14360936 ~ 14361647 (-) False LOC113527598
XR_004579086.1 other upstream 1626191 14408726 ~ 14415069 (-) False rx1
XR_003402957.2 other upstream 1657319 14439854 ~ 14460337 (-) False zfr2

Expression Profile