LOC110488433 (LOC106569773)


Basic Information

Item Value
gene id LOC110488433
gene name LOC106569773
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 41126017 ~ 41137556 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971327.1
GGACAGCCTAAATCGACAGCGGGAGGAAGGACGGCTCTGTGACCTCTCCATCCAGGTGCAGGGACAGGTGTTCAGGGCCCACCGCTGTGTGCTGGCTGCCTCCTCGCCATACTTTCACGATCAGAGACCCGTTCCAAATGGACCTGAGGACAACTAGACCCATTCCATATAGAACTGGACAGATCCaagtgagggaagcagcagaaaagtcCATTTTTAAGGTGTTGCTGAAGAATGTGACGACAGTGTCTCTGCCCTCTGTCATGGACCCTGTGGCCTTTGAGAGTGTCCTGAGTTCAGCCTACACTGGCCAACTGAGCATAGTGCGTGATGACATTGTCAACTACGTGACTGTAGCCAGCTTCCTCCAGATGTGGCATATTGTTGACAAGTGTACAGAGATCCTGAAGAGACCTCGACCCCCAGCAGAATGCAACCCTGGGGATGCTGCAGCTGCCACACACCATGGTGCCTCCTCAAGGCAGCAGTCCCCAAGCAGCACTGACTGCctatacatggagagagaggggaaaggtaaggAGAGGAGGCCCTATGGCCAGGAGCAGAATTCGCTGCCTCCATTGGCCACGTGGAGGAGGCCCCAGCAGTTCCCCAGGTGGAGCCGCCCCAGGTCCTCACCCCAGCAAGTCATATCCATGCCTGCCCAGCACCTAGCTGACTCACACCTGGACTACCACCCTGCTGGGGAGAGTGACTACTCCAGCTGTGAGGAGGTGTGGATGTCCAGCCACAGCAAAGCCAGCCCCCTAAGTCATCATGATGGGAGAGGACTGGACCATAGCCACACCAGGCATGGGGGGATTCCTGGTGAGGCGTTGAGACTGAGAGCTAGACTGAGACAGAGGGCAGTGCCACCAAGTGCTGAGAAACTCCATGGCAGGGATAGAGGAAGTGGAGGGGGCTTTGGGGAAGAAcctcaggagaagagagggacTGAAAGAGGGATTGAAGCAAATGAAGAAAtgggggaagaggagaagagggaggtgcCTGAGCGGAGAGGAAACTCTGGAGACTTCCACACTAGTGTACACCAAGTTGAAGAGGGAGGACAGCCAGAGGGGAAAAAGAGCTCAGGGGAACTgcagaagaaagaggagagaccgCTGGGGAGAAGCTTAGCCCTGACTTCTCCCCATGTTGTGGATCCAGATGATGTGATTCCTGGCCCATCCTGCCCAGCTCCTACACCCTCATCCCGGATGCAGTGGCAGGCCGGTCCCTGGTCTCAGCAAGTAGCTAGGCCGCAAGCTGGAGAGGAATACTACAGAAGAGAAGACGATgaagaagatgaggaggaagTGGACTTTGGCCGATTTGCAGATGGTGCTTTTGGAAGGGGCACCTATGATGAGATTGAGGATGGCACCGGGCAAGTTTCTCAGAGACCCTTAGTACCTGACTCTCCTGATGACAATGACTTTATCCTGGGGGCCCAAGTGTTGAACTGGCCCTCTGGGGCAGACATGACCCTTGGTGGTGGTACCCCAACCTCCAGCtgccccctgtccccatcccctgCTCCATTCCCCCCTTCCTCCTCACCCCccatcccctcttcctcctccctctcccttgctGGGGCCCCTTACACGGGCAAAGTGCACTTCTGCCACTGTGGGAAGGCCTACACCCTAAAGAGCATGCGTGACCGCCACGTCAAGATGCAGCACCTCAACCTGCGGCCCTTCGCCTGCCCTGTGTGCACCAAGAGCTTCAAGATGAAGCACCACCTGACCAAGCACCTGAAGACCCATGGTGGGCTGCGGCCTTATGAGTGTGGCCTGTGTGGGAAGAAGGTCATCTGGAGGGACAGTTTCCTGCGCCACCAGGCCCGCTGTGAGAGACTGGCCGCCAGCTGTGATGGCGCTGCTGCCAGTAGTAACACCAGAGCGGCTGCCGACATGGACGATGGTTATGCTTATGGGTTCGGGGAGGGGTTTCTCTCACAAGGCGGGCAGGTGAAAGTGGAGCAGGCAGACTTTCAGGGGGAGGCAGAGTCTGGGATGAGTGGGCTGTTAGGGGCTGGGGCTGAGTTAGGCTCTCAGTCAAGGACTCTGGTTAGTCACAACTTTAAGGAGGAAGCCAGCGACAGGTTTAGCTGAAGCGAAATGAGGTAAACAGTTGGAATATAGGGCCCACAGCACTTGAATTGAGTAATAGATTGGTTGATTATGCTCATAATGGTCCATGTGTAATCCATTAACACTCTGATCCATGTTAATGCACCTGTTTGTGAACAGTTATTCTACGAGGGacatttgtttattatttatttaaatgacTATCCCATCATGCTATTGATATCGCAAAAGAGGGCACAAACATGTGATGTGAGTCTGTGTACATTTTGTATTTAAATGAGCCAATTTATCTAATGAGCTGTCTTGTGAATGTATTTGAGTCACAATAAACTCAGTTTGCACAGATA
>XM_036971325.1
AGACAAACGtctgtacacacctactcattcaaggatctAGGAGACAAATAACGAGGGGTAGATGCCTAGATGATTTTAGTAGTTCCGTGAGTTAGCCATGGTTGGTATATGGGCACAGTCACAGACAAGCTCTCACACCCAACACCGATGATGGAACTGTCGAGTCGAGTGTACGTTACTAAACGAGGACGGGGTGATAGAACAATGCTGCATAGAATGTGCTTTAGCTGAAATTGCTGGCATATTTTGAAGACTCGTTTCGCTTTGAGAACCTTAAAACATAGGCTCAATGGATCAGGGCTGCATTAGCATAGTCTCTGGTGCCCCTGCTGGCCCGAAGGTTCAAGTATGCTTCCCTGGTGTGCGTGCAGCAGTTTTGGACAGCCTAAATCGACAGCGGGAGGAAGGACGGCTCTGTGACCTCTCCATCCAGGTGCAGGGACAGGTGTTCAGGGCCCACCGCTGTGTGCTGGCTGCCTCCTCGCCATACTTTCACGATCAGGTGTTGCTGAAGAATGTGACGACAGTGTCTCTGCCCTCTGTCATGGACCCTGTGGCCTTTGAGAGTGTCCTGAGTTCAGCCTACACTGGCCAACTGAGCATAGTGCGTGATGACATTGTCAACTACGTGACTGTAGCCAGCTTCCTCCAGATGTGGCATATTGTTGACAAGTGTACAGAGATCCTGAAGAGACCTCGACCCCCAGCAGAATGCAACCCTGGGGATGCTGCAGCTGCCACACACCATGGTGCCTCCTCAAGGCAGCAGTCCCCAAGCAGCACTGACTGCctatacatggagagagaggggaaaggtaaggAGAGGAGGCCCTATGGCCAGGAGCAGAATTCGCTGCCTCCATTGGCCACGTGGAGGAGGCCCCAGCAGTTCCCCAGGTGGAGCCGCCCCAGGTCCTCACCCCAGCAAGTCATATCCATGCCTGCCCAGCACCTAGCTGACTCACACCTGGACTACCACCCTGCTGGGGAGAGTGACTACTCCAGCTGTGAGGAGGTGTGGATGTCCAGCCACAGCAAAGCCAGCCCCCTAAGTCATCATGATGGGAGAGGACTGGACCATAGCCACACCAGGCATGGGGGGATTCCTGGTGAGGCGTTGAGACTGAGAGCTAGACTGAGACAGAGGGCAGTGCCACCAAGTGCTGAGAAACTCCATGGCAGGGATAGAGGAAGTGGAGGGGGCTTTGGGGAAGAAcctcaggagaagagagggacTGAAAGAGGGATTGAAGCAAATGAAGAAAtgggggaagaggagaagagggaggtgcCTGAGCGGAGAGGAAACTCTGGAGACTTCCACACTAGTGTACACCAAGTTGAAGAGGGAGGACAGCCAGAGGGGAAAAAGAGCTCAGGGGAACTgcagaagaaagaggagagaccgCTGGGGAGAAGCTTAGCCCTGACTTCTCCCCATGTTGTGGATCCAGATGATGTGATTCCTGGCCCATCCTGCCCAGCTCCTACACCCTCATCCCGGATGCAGTGGCAGGCCGGTCCCTGGTCTCAGCAAGTAGCTAGGCCGCAAGCTGGAGAGGAATACTACAGAAGAGAAGACGATgaagaagatgaggaggaagTGGACTTTGGCCGATTTGCAGATGGTGCTTTTGGAAGGGGCACCTATGATGAGATTGAGGATGGCACCGGGCAAGTTTCTCAGAGACCCTTAGTACCTGACTCTCCTGATGACAATGACTTTATCCTGGGGGCCCAAGTGTTGAACTGGCCCTCTGGGGCAGACATGACCCTTGGTGGTGGTACCCCAACCTCCAGCtgccccctgtccccatcccctgCTCCATTCCCCCCTTCCTCCTCACCCCccatcccctcttcctcctccctctcccttgctGGGGCCCCTTACACGGGCAAAGTGCACTTCTGCCACTGTGGGAAGGCCTACACCCTAAAGAGCATGCGTGACCGCCACGTCAAGATGCAGCACCTCAACCTGCGGCCCTTCGCCTGCCCTGTGTGCACCAAGAGCTTCAAGATGAAGCACCACCTGACCAAGCACCTGAAGACCCATGGTGGGCTGCGGCCTTATGAGTGTGGCCTGTGTGGGAAGAAGGTCATCTGGAGGGACAGTTTCCTGCGCCACCAGGCCCGCTGTGAGAGACTGGCCGCCAGCTGTGATGGCGCTGCTGCCAGTAGTAACACCAGAGCGGCTGCCGACATGGACGATGGTTATGCTTATGGGTTCGGGGAGGGGTTTCTCTCACAAGGCGGGCAGGTGAAAGTGGAGCAGGCAGACTTTCAGGGGGAGGCAGAGTCTGGGATGAGTGGGCTGTTAGGGGCTGGGGCTGAGTTAGGCTCTCAGTCAAGGACTCTGGTTAGTCACAACTTTAAGGAGGAAGCCAGCGACAGGTTTAGCTGAAGCGAAATGAGGTAAACAGTTGGAATATAGGGCCCACAGCACTTGAATTGAGTAATAGATTGGTTGATTATGCTCATAATGGTCCATGTGTAATCCATTAACACTCTGATCCATGTTAATGCACCTGTTTGTGAACAGTTATTCTACGAGGGacatttgtttattatttatttaaatgacTATCCCATCATGCTATTGATATCGCAAAAGAGGGCACAAACATGTGATGTGAGTCTGTGTACATTTTGTATTTAAATGAGCCAATTTATCTAATGAGCTGTCTTGTGAATGTATTTGAGTCACAATAAACTCAGTTTGCACAGATA
>XM_036971326.1
ACCAGACAAACGtctgtacacacctactcattcaaggatctAGGAGACAAATAACGAGGGGTAGATGCCTAGATGATTTTAGTAGTTCCGTGAGTTAGCCATGGTTGGTATATGGGCACAGTCACAGACAAGCTCTCACACCCAACACCGATGATGGAACTGTCGAGTCGAGTGTACGTTACTAAACGAGGACGGGGTGATAGAACAATGCTGCATAGAATGTGCTTTAGCTGAAATTGCTGGCATATTTTGAAGACTCGTTTCGCTTTGAGAACCTTAAAACATAGGCTCAATGGATCAGGGCTGCATTAGCATAGTCTCTGGTGCCCCTGCTGGCCCGAAGGTTCAAGTATGCTTCCCTGGTGTGCGTGCAGCAGTTTTGGACAGCCTAAATCGACAGCGGGAGGAAGGACGGCTCTGTGACCTCTCCATCCAGGTGCAGGGACAGGTGTTCAGGGCCCACCGCTGTGTGCTGGCTGCCTCCTCGCCATACTTTCACGATCAGGTTAGTTAGGCACGGAGGAAAAGGCAGTGATGGGGAGATCTGGCTTTTGTACGTCACTGCCTTATCCGTTTGTTGGACTAGCACAATTCCCGCCCACATTTTAAGCCTACACAAACTTGTGAGTTATCTATATGAAGTTGGACCCGTTTCCCGAAATCGATCTGGTATTTCCCATCCGGACCCGATATACATAAATACTTTTCTACAATATAGAGACCCGTTCCAAATGGACCTGAGGACAACTAGACCCATTCCATATAGAACTGGACAGATCCaagtgagggaagcagcagaaaagtcCATTTTTAAGGTGTTGCTGAAGAATGTGACGACAGTGTCTCTGCCCTCTGTCATGGACCCTGTGGCCTTTGAGAGTGTCCTGAGTTCAGCCTACACTGGCCAACTGAGCATAGTGCGTGATGACATTGTCAACTACGTGACTGTAGCCAGCTTCCTCCAGATGTGGCATATTGTTGACAAGTGTACAGAGATCCTGAAGAGACCTCGACCCCCAGCAGAATGCAACCCTGGGGATGCTGCAGCTGCCACACACCATGGTGCCTCCTCAAGGCAGCAGTCCCCAAGCAGCACTGACTGCctatacatggagagagaggggaaaggtaaggAGAGGAGGCCCTATGGCCAGGAGCAGAATTCGCTGCCTCCATTGGCCACGTGGAGGAGGCCCCAGCAGTTCCCCAGGTGGAGCCGCCCCAGGTCCTCACCCCAGCAAGTCATATCCATGCCTGCCCAGCACCTAGCTGACTCACACCTGGACTACCACCCTGCTGGGGAGAGTGACTACTCCAGCTGTGAGGAGGTGTGGATGTCCAGCCACAGCAAAGCCAGCCCCCTAAGTCATCATGATGGGAGAGGACTGGACCATAGCCACACCAGGCATGGGGGGATTCCTGGTGAGGCGTTGAGACTGAGAGCTAGACTGAGACAGAGGGCAGTGCCACCAAGTGCTGAGAAACTCCATGGCAGGGATAGAGGAAGTGGAGGGGGCTTTGGGGAAGAAcctcaggagaagagagggacTGAAAGAGGGATTGAAGCAAATGAAGAAAtgggggaagaggagaagagggaggtgcCTGAGCGGAGAGGAAACTCTGGAGACTTCCACACTAGTGTACACCAAGTTGAAGAGGGAGGACAGCCAGAGGGGAAAAAGAGCTCAGGGGAACTgcagaagaaagaggagagaccgCTGGGGAGAAGCTTAGCCCTGACTTCTCCCCATGTTGTGGATCCAGATGATGTGATTCCTGGCCCATCCTGCCCAGCTCCTACACCCTCATCCCGGATGCAGTGGCAGGCCGGTCCCTGGTCTCAGCAAGTAGCTAGGCCGCAAGCTGGAGAGGAATACTACAGAAGAGAAGACGATgaagaagatgaggaggaagTGGACTTTGGCCGATTTGCAGATGGTGCTTTTGGAAGGGGCACCTATGATGAGATTGAGGATGGCACCGGGCAAGTTTCTCAGAGACCCTTAGTACCTGACTCTCCTGATGACAATGACTTTATCCTGGGGGCCCAAGTGTTGAACTGGCCCTCTGGGGCAGACATGACCCTTGGTGGTGGTACCCCAACCTCCAGCtgccccctgtccccatcccctgCTCCATTCCCCCCTTCCTCCTCACCCCccatcccctcttcctcctccctctcccttgctGGGGCCCCTTACACGGGCAAAGTGCACTTCTGCCACTGTGGGAAGGCCTACACCCTAAAGAGCATGCGTGACCGCCACGTCAAGATGCAGCACCTCAACCTGCGGCCCTTCGCCTGCCCTGTGTGCACCAAGAGCTTCAAGATGAAGCACCACCTGACCAAGCACCTGAAGACCCATGGTGGGCTGCGGCCTTATGAGTGTGGCCTGTGTGGGAAGAAGGTCATCTGGAGGGACAGTTTCCTGCGCCACCAGGCCCGCTGTGAGAGACTGGCCGCCAGCTGTGATGGCGCTGCTGCCAGTAGTAACACCAGAGCGGCTGCCGACATGGACGATGGTTATGCTTATGGGTTCGGGGAGGGGTTTCTCTCACAAGGCGGGCAGGTGAAAGTGGAGCAGGCAGACTTTCAGGGGGAGGCAGAGTCTGGGATGAGTGGGCTGTTAGGGGCTGGGGCTGAGTTAGGCTCTCAGTCAAGGACTCTGGTTAGTCACAACTTTAAGGAGGAAGCCAGCGACAGGTTTAGCTGAAGCGAAATGAGGTAAACAGTTGGAATATAGGGCCCACAGCACTTGAATTGAGTAATAGATTGGTTGATTATGCTCATAATGGTCCATGTGTAATCCATTAACACTCTGATCCATGTTAATGCACCTGTTTGTGAACAGTTATTCTACGAGGGacatttgtttattatttatttaaatgacTATCCCATCATGCTATTGATATCGCAAAAGAGGGCACAAACATGTGATGTGAGTCTGTGTACATTTTGTATTTAAATGAGCCAATTTATCTAATGAGCTGTCTTGTGAATGTATTTGAGTCACAATAAACTCAGTTTGCACAGATA

Function

NR:

description
hypermethylated in cancer 2 protein-like

GO: NA

KEGG:

id description
K10502 ZBTB22, BING1; zinc finger and BTB domain-containing protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971327.1 False 2452 mRNA 0.54 4 41126017 41134066
XM_036971325.1 False 2733 mRNA 0.53 4 41126017 41137553
XM_036971326.1 True 3046 mRNA 0.52 5 41126017 41137556

Neighbor

gene id symbol gene type direction distance location
usf2 LOC106569770 coding downstream 77360 41019276 ~ 41048657 (-)
lipea lipe2 coding downstream 362287 40741805 ~ 40763730 (-)
LOC110531058 LOC106570129 coding downstream 402317 40678082 ~ 40723700 (-)
LOC110518971 LOC106570128 coding downstream 466385 40652557 ~ 40659632 (-)
LOC110511528 LOC106570118 coding downstream 762092 40343940 ~ 40363925 (-)
eppk1 LOC106598963 coding upstream 280991 41418547 ~ 41445133 (-)
LOC110487689 plec coding upstream 332007 41469563 ~ 41609380 (-)
nudcd1 nudc1 coding upstream 506764 41644320 ~ 41675688 (-)
LOC110529149 LOC103393926 coding upstream 608732 41746288 ~ 41747390 (-)
G2329330 NA non-coding downstream 146695 40973394 ~ 40979322 (-)
G2328880 LOC106597055 non-coding downstream 394559 40730409 ~ 40731458 (-)
G2328835 NA non-coding downstream 474993 40650643 ~ 40651024 (-)
G2328854 NA non-coding downstream 500491 40625156 ~ 40625526 (-)
G2328826 NA non-coding downstream 508264 40590714 ~ 40617753 (-)
G2329431 NA non-coding upstream 3526 41141082 ~ 41142617 (-)
G2329463 NA non-coding upstream 31778 41169334 ~ 41170322 (-)
G2329427 NA non-coding upstream 68141 41205697 ~ 41208946 (-)
G2329429 NA non-coding upstream 72203 41209759 ~ 41211651 (-)
G2329433 NA non-coding upstream 77603 41215159 ~ 41223904 (-)
G2328836 NA other downstream 476595 40648804 ~ 40649422 (-)
G2328315 LOC106570114 other downstream 917286 40208053 ~ 40208731 (-)
G2328279 LOC106570112 other downstream 986833 40136592 ~ 40139184 (-)
G2328245 NA other downstream 1043171 40082363 ~ 40082846 (-)
G2329495 NA other upstream 116439 41253995 ~ 41257340 (-)
G2329999 NA other upstream 631212 41768768 ~ 41769560 (-)

Expression


Co-expression Network