RNA id: XM_036971327.1


Basic Information

Item Value
RNA id XM_036971327.1
length 2452
RNA type mRNA
GC content 0.54
exon number 4
gene id LOC110488433
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 41126017 ~ 41137556 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACAGCCTAAATCGACAGCGGGAGGAAGGACGGCTCTGTGACCTCTCCATCCAGGTGCAGGGACAGGTGTTCAGGGCCCACCGCTGTGTGCTGGCTGCCTCCTCGCCATACTTTCACGATCAGAGACCCGTTCCAAATGGACCTGAGGACAACTAGACCCATTCCATATAGAACTGGACAGATCCaagtgagggaagcagcagaaaagtcCATTTTTAAGGTGTTGCTGAAGAATGTGACGACAGTGTCTCTGCCCTCTGTCATGGACCCTGTGGCCTTTGAGAGTGTCCTGAGTTCAGCCTACACTGGCCAACTGAGCATAGTGCGTGATGACATTGTCAACTACGTGACTGTAGCCAGCTTCCTCCAGATGTGGCATATTGTTGACAAGTGTACAGAGATCCTGAAGAGACCTCGACCCCCAGCAGAATGCAACCCTGGGGATGCTGCAGCTGCCACACACCATGGTGCCTCCTCAAGGCAGCAGTCCCCAAGCAGCACTGACTGCctatacatggagagagaggggaaaggtaaggAGAGGAGGCCCTATGGCCAGGAGCAGAATTCGCTGCCTCCATTGGCCACGTGGAGGAGGCCCCAGCAGTTCCCCAGGTGGAGCCGCCCCAGGTCCTCACCCCAGCAAGTCATATCCATGCCTGCCCAGCACCTAGCTGACTCACACCTGGACTACCACCCTGCTGGGGAGAGTGACTACTCCAGCTGTGAGGAGGTGTGGATGTCCAGCCACAGCAAAGCCAGCCCCCTAAGTCATCATGATGGGAGAGGACTGGACCATAGCCACACCAGGCATGGGGGGATTCCTGGTGAGGCGTTGAGACTGAGAGCTAGACTGAGACAGAGGGCAGTGCCACCAAGTGCTGAGAAACTCCATGGCAGGGATAGAGGAAGTGGAGGGGGCTTTGGGGAAGAAcctcaggagaagagagggacTGAAAGAGGGATTGAAGCAAATGAAGAAAtgggggaagaggagaagagggaggtgcCTGAGCGGAGAGGAAACTCTGGAGACTTCCACACTAGTGTACACCAAGTTGAAGAGGGAGGACAGCCAGAGGGGAAAAAGAGCTCAGGGGAACTgcagaagaaagaggagagaccgCTGGGGAGAAGCTTAGCCCTGACTTCTCCCCATGTTGTGGATCCAGATGATGTGATTCCTGGCCCATCCTGCCCAGCTCCTACACCCTCATCCCGGATGCAGTGGCAGGCCGGTCCCTGGTCTCAGCAAGTAGCTAGGCCGCAAGCTGGAGAGGAATACTACAGAAGAGAAGACGATgaagaagatgaggaggaagTGGACTTTGGCCGATTTGCAGATGGTGCTTTTGGAAGGGGCACCTATGATGAGATTGAGGATGGCACCGGGCAAGTTTCTCAGAGACCCTTAGTACCTGACTCTCCTGATGACAATGACTTTATCCTGGGGGCCCAAGTGTTGAACTGGCCCTCTGGGGCAGACATGACCCTTGGTGGTGGTACCCCAACCTCCAGCtgccccctgtccccatcccctgCTCCATTCCCCCCTTCCTCCTCACCCCccatcccctcttcctcctccctctcccttgctGGGGCCCCTTACACGGGCAAAGTGCACTTCTGCCACTGTGGGAAGGCCTACACCCTAAAGAGCATGCGTGACCGCCACGTCAAGATGCAGCACCTCAACCTGCGGCCCTTCGCCTGCCCTGTGTGCACCAAGAGCTTCAAGATGAAGCACCACCTGACCAAGCACCTGAAGACCCATGGTGGGCTGCGGCCTTATGAGTGTGGCCTGTGTGGGAAGAAGGTCATCTGGAGGGACAGTTTCCTGCGCCACCAGGCCCGCTGTGAGAGACTGGCCGCCAGCTGTGATGGCGCTGCTGCCAGTAGTAACACCAGAGCGGCTGCCGACATGGACGATGGTTATGCTTATGGGTTCGGGGAGGGGTTTCTCTCACAAGGCGGGCAGGTGAAAGTGGAGCAGGCAGACTTTCAGGGGGAGGCAGAGTCTGGGATGAGTGGGCTGTTAGGGGCTGGGGCTGAGTTAGGCTCTCAGTCAAGGACTCTGGTTAGTCACAACTTTAAGGAGGAAGCCAGCGACAGGTTTAGCTGAAGCGAAATGAGGTAAACAGTTGGAATATAGGGCCCACAGCACTTGAATTGAGTAATAGATTGGTTGATTATGCTCATAATGGTCCATGTGTAATCCATTAACACTCTGATCCATGTTAATGCACCTGTTTGTGAACAGTTATTCTACGAGGGacatttgtttattatttatttaaatgacTATCCCATCATGCTATTGATATCGCAAAAGAGGGCACAAACATGTGATGTGAGTCTGTGTACATTTTGTATTTAAATGAGCCAATTTATCTAATGAGCTGTCTTGTGAATGTATTTGAGTCACAATAAACTCAGTTTGCACAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2663768 lncRNA downstream 146695 40973394 ~ 40979322 (-) True G2329330
TU2663290 lncRNA downstream 394559 40730409 ~ 40731458 (-) True G2328880
TU2663289 lncRNA downstream 394688 40730409 ~ 40731329 (-) False G2328880
TU2663243 lncRNA downstream 474993 40650643 ~ 40651024 (-) True G2328835
TU2663262 lncRNA downstream 500491 40625156 ~ 40625526 (-) True G2328854
TU2663888 lncRNA upstream 7016 41141082 ~ 41142617 (-) True G2329431
TU2663922 lncRNA upstream 35268 41169334 ~ 41170322 (-) True G2329463
TU2663884 lncRNA upstream 71631 41205697 ~ 41208946 (-) False G2329427
TU2663882 lncRNA upstream 72981 41207047 ~ 41208946 (-) True G2329427
TU2663886 lncRNA upstream 75693 41209759 ~ 41211651 (-) True G2329429
XM_036971298.1 mRNA downstream 77360 41019472 ~ 41048657 (-) False usf2
XM_036971299.1 mRNA downstream 77361 41019472 ~ 41048656 (-) False usf2
XM_036971300.1 mRNA downstream 77361 41019472 ~ 41048656 (-) False usf2
XM_036971301.1 mRNA downstream 77362 41019472 ~ 41048655 (-) False usf2
XM_036970603.1 mRNA downstream 362287 40741805 ~ 40763730 (-) True lipea
XM_021561997.2 mRNA upstream 284481 41418547 ~ 41445133 (-) False eppk1
LOC110487689 mRNA upstream 335497 41469563 ~ 41609380 (-) True LOC110487689
XM_036970846.1 mRNA upstream 510254 41644320 ~ 41675687 (-) False nudcd1
XM_036970845.1 mRNA upstream 510255 41644321 ~ 41675688 (-) True nudcd1
XR_005041294.1 mRNA upstream 612222 41746288 ~ 41747390 (-) True LOC110529149
TU2663811 other downstream 98066 41019276 ~ 41027951 (-) True usf2
TU2663244 other downstream 476595 40648804 ~ 40649422 (-) True G2328836
TU2662679 other downstream 917286 40208053 ~ 40208731 (-) True G2328315
TU2662640 other downstream 986833 40136592 ~ 40139184 (-) True G2328279
TU2662606 other downstream 1043171 40082363 ~ 40082846 (-) True G2328245
TU2663958 other upstream 119929 41253995 ~ 41257340 (-) True G2329495
TU2664134 other upstream 305469 41439535 ~ 41439869 (-) True eppk1
TU2664510 other upstream 634702 41768768 ~ 41769560 (-) True G2329999

Expression Profile