RNA id: TU2663244



Basic Information


Item Value
RNA id TU2663244
length 619
RNA type TUCP
GC content 0.51
exon number 1
gene id G2328836
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 40648804 ~ 40649422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTCCAGCACTCccgaagaagtttggaaccaccaagactcttcctagagctggccacccggccaaattgagcaatcgggggagaagggccttggtcagggaggtgaccaagaacccgatgatcactgacagagctctagagttcctctgtggaaatgggagaatcttccagaaggataaccatctctgcagcactcaaccaatcaggcatttatgggtgtggccagacagaagccactctacagtgaaaggcacatgacagcacgcatggagtttgccaaaaggcacctaaagaatctcagaccatgagaaacaagattctctggtctgatgaaaccgagattgaactatttggcctgaatgccaagcgtcacgtctggtggaaacctggcacgatccctacggtgaagcatggtggtggcagcaacatgctgtggggatgtttttttagcagcagggactgggagactagtcaggatcgagggaaagatgaacggagtaaagtacagagatccttgatgaaaacctgctccagagctctcaggacctcagactttggcgaaggttcaccttccaacaggaaaacaatcctaagcacacagccaagacaatgcaggagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2663262 lncRNA downstream 23278 40625156 ~ 40625526 (-) True G2328854
TU2663232 lncRNA downstream 31051 40590714 ~ 40617753 (-) True G2328826
TU2663211 lncRNA downstream 33127 40567097 ~ 40615677 (-) True G2328808
TU2663161 lncRNA downstream 127376 40519642 ~ 40521428 (-) True G2328762
TU2663177 lncRNA downstream 136382 40508710 ~ 40512422 (-) False G2328777
TU2663243 lncRNA upstream 1221 40650643 ~ 40651024 (-) True G2328835
TU2663289 lncRNA upstream 80987 40730409 ~ 40731329 (-) False G2328880
TU2663290 lncRNA upstream 80987 40730409 ~ 40731458 (-) True G2328880
TU2663768 lncRNA upstream 323972 40973394 ~ 40979322 (-) True G2329330
TU2663888 lncRNA upstream 491660 41141082 ~ 41142617 (-) True G2329431
XM_036971475.1 mRNA downstream 284879 40343940 ~ 40363925 (-) True LOC110511528
XM_036971662.1 mRNA downstream 339307 40308202 ~ 40309497 (-) True LOC118946520
XM_036971749.1 mRNA downstream 365297 40269019 ~ 40283507 (-) False LOC110488394
XM_036971750.1 mRNA downstream 365297 40269019 ~ 40283507 (-) False LOC110488394
XM_036971751.1 mRNA downstream 365297 40269019 ~ 40283507 (-) True LOC110488394
XM_036970884.1 mRNA upstream 3135 40652557 ~ 40659632 (-) True LOC110518971
XM_036970974.1 mRNA upstream 28660 40678082 ~ 40723700 (-) False LOC110531058
XM_036970973.1 mRNA upstream 32754 40682176 ~ 40723694 (-) True LOC110531058
XM_036970604.1 mRNA upstream 92383 40741805 ~ 40754440 (-) False lipea
NM_001197210.1 mRNA upstream 92383 40741805 ~ 40763655 (-) False lipea
TU2662679 other downstream 440073 40208053 ~ 40208731 (-) True G2328315
TU2662640 other downstream 509620 40136592 ~ 40139184 (-) True G2328279
TU2662606 other downstream 565958 40082363 ~ 40082846 (-) True G2328245
TU2662576 other downstream 606836 40040012 ~ 40041968 (-) True G2328215
TU2661959 other downstream 1093873 39547083 ~ 39554931 (-) True G2327652
TU2663811 other upstream 369854 41019276 ~ 41027951 (-) True usf2
TU2663958 other upstream 604573 41253995 ~ 41257340 (-) True G2329495
TU2664134 other upstream 790113 41439535 ~ 41439869 (-) True eppk1
TU2664510 other upstream 1119346 41768768 ~ 41769560 (-) True G2329999

Expression Profile