Gene
RNA
| Item | Value |
|---|---|
| gene id | G2327675 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050572.1 |
| NCBI id | CM025859.1 |
| chromosome length | 41837469 |
| location | 39619149 ~ 39619451 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| tripartite motif-containing protein 46-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2661982 | True | 303 | lncRNA | 0.60 | 1 | 39619149 | 39619451 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110510474 | LOC106570100 | coding | downstream | 97283 | 39519479 ~ 39521866 (-) |
| LOC110517409 | LOC106570099 | coding | downstream | 108339 | 39508407 ~ 39510810 (-) |
| snx27a | LOC106570098 | coding | downstream | 124486 | 39451446 ~ 39494663 (-) |
| LOC110487680 | LOC106570095 | coding | downstream | 206794 | 39396388 ~ 39412355 (-) |
| lrrc71 | lrrc71 | coding | downstream | 242247 | 39361468 ~ 39376902 (-) |
| LOC110488480 | LOC106570105 | coding | upstream | 51274 | 39670725 ~ 39735519 (-) |
| LOC110488484 | LOC106588171 | coding | upstream | 132689 | 39752140 ~ 39844765 (-) |
| LOC118946504 | NA | coding | upstream | 326512 | 39945963 ~ 39948951 (-) |
| LOC110488485 | NA | coding | upstream | 331743 | 39951194 ~ 39953447 (-) |
| cks1b | LOC106570108 | coding | upstream | 344206 | 39963657 ~ 39980579 (-) |
| G2327674 | NA | non-coding | downstream | 478 | 39618434 ~ 39618671 (-) |
| G2327673 | NA | non-coding | downstream | 915 | 39617859 ~ 39618234 (-) |
| G2327672 | LOC106570101 | non-coding | downstream | 1392 | 39617499 ~ 39617757 (-) |
| G2327668 | NA | non-coding | downstream | 6512 | 39612138 ~ 39612637 (-) |
| G2327655 | NA | non-coding | downstream | 11153 | 39592642 ~ 39607996 (-) |
| G2327677 | NA | non-coding | upstream | 219 | 39619670 ~ 39620244 (-) |
| G2327676 | LOC106570101 | non-coding | upstream | 1232 | 39620683 ~ 39620919 (-) |
| G2327680 | NA | non-coding | upstream | 5690 | 39625141 ~ 39625539 (-) |
| G2327681 | LOC106570101 | non-coding | upstream | 6735 | 39626186 ~ 39627005 (-) |
| G2327683 | LOC106570101 | non-coding | upstream | 9756 | 39629207 ~ 39629461 (-) |
| G2327652 | NA | other | downstream | 64218 | 39547083 ~ 39554931 (-) |
| G2327348 | LOC106588182 | other | downstream | 302197 | 39310442 ~ 39316952 (-) |
| G2327347 | LOC106570093 | other | downstream | 309158 | 39308560 ~ 39309991 (-) |
| mrps21 | mrps21 | other | downstream | 384281 | 39149872 ~ 39234977 (-) |
| G2328215 | NA | other | upstream | 420561 | 40040012 ~ 40041968 (-) |
| G2328245 | NA | other | upstream | 462912 | 40082363 ~ 40082846 (-) |
| G2328279 | LOC106570112 | other | upstream | 517141 | 40136592 ~ 40139184 (-) |
| G2328315 | LOC106570114 | other | upstream | 588602 | 40208053 ~ 40208731 (-) |
| G2328836 | NA | other | upstream | 1029353 | 40648804 ~ 40649422 (-) |
