XLOC_004213 (nacc1b)


Basic Information

Item Value
gene id XLOC_004213
gene name nacc1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 31218956 ~ 31234584 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008068
GCCCATCCGCCATATAATTTGACCCCATTAGAGCGACGTGATGGACATATTTTGGAGGCGTTTAGCAGCAGCGCTCGTCCTCCAGTGCGCCATGCAGAGTTGAGTTGGCATGCAGAGCGCGTAGCACCCACAACCCTCTGGGGCTTCACCTGAGTCTAGACGCTCCGCACGGCGCACTTTCCCCGCACTGCCGCACGCACAACCCTATACACAGCCGGCTGAATGCGTCGGCTGTCGGACTGCTTTTGCTCGTGTGATCGGTGACTCTGCGCTCCAGCCGGGGGTGACAAAACGATGCACCCCTCGATAATTCTGCGCTCGGGCGTCTTGCCTGTGCATTCACGATGAATGGCTGCCCGTAGAGAGAAAGAGTCGGACTCCTCCATTGAAACACTTTCCAGCAGATTGCAAGCGAGGGGACTCTGTAGTGCTGGGCTTTACGATATGGCTCAGATGCTGCAGATGGCGATTCCCAACTTTGGCAACAATATCTTGGAGTGTCTTAATGAGCAGAGGCTTCAGGGACTGTACTGTGATGTGTCAGTTGTGGTGAAGGGACACACATTTAAAGCCCACCGGGCAGTGCTGGCTGCCAGCAGCTCCTATTTTCGAGATTTGTTCAACTCTGGAAGCAAGAGCTCTGTGGTGGAATTACCGCCAGCGGTCCAACCTCAGAGCTTCCAGCAGATCCTTTCCTTCTGCTACACCGGTCGACTTAGCATGAATTTAGGCGATCAGTTCCTCCTAATGTACACAGCGGGATTCCTGCAGATTCAGCAAATTATGGAAAAAGGTACAGAGTTCTTCCTAAAGGTCAGCTCGCCAAGTTGTGACTCGCAGGGTCTTCACACAGAAGATGCGCCACCTTCAGAACCCCAAAGTCCTGTTACCCAAACTGGGACTGGCTCTATAGGTATGGGTGGGTCAACAGCAGCTCGACCTGCATCCTGCCAAACACCACTTCCATTAGTGTCAAGAGTTAAGACGGAGCAGCTACCACAGGCCCCTCAGCCACTTCAAGAAGCATCATCATATTCGGTAGTTTGCACTCCAGTTGCTAAGCGCCTTTGGGAAGGAGGCAACCGTGAAGGAGGTGGAGGATCAGGAGGAAGTGGAGGTGGAGGTGTGAGAAAAGCAGCACGTTATTCGCAGGAAGTGGTACGAAGTGTGGGCGGGGCACAGCCTCAAAGCATCGCTTTATTGGGCGGAAGTGGCACAACTAAtagcaacagcaacaacaataataacaacaacagcagtaGCACGCCGGAAGGCACCAGCCCAGGAACTCCCAGCATGTACACCAGTGACTCGCCAATCTCTTaccatgatgatgatgaagaggaggaaatCCCGGATGAAACGACAGAAGAACAGTACAGACAGATCTGTAATATGTACACTATGTACAGCATGCTGAATGTAGGGGCAACTGCTAACGAACGAGTGGAATCACTTCCAGACCACCTCACCGTTGAATCAAGAGGAAGAGGAGTTCGAGTGAGGCAAGATCTGGCTTCTCTTCCCACTGAGCTCATTGCACAGATCGGAAACCGCTGTCATCCTAAACTGTATGAAGAAGGTGACCCTGCTGAGAAACTGGAGCTAGTAACAGGCACCAGTGTTTTTATTTCACGTGCTCAGCTGATGAACTGCCACGTTAGTGCGGGCACACGCCACAAAGTGTTGCTCCGGCGGCTCCTGGCTGCCTTTTTTGACCGAAGCACTCTTGCAAACAGCTGTGGTACAGGCATTCGTTCCTCCACCAACGACCCAAATCGCAAGCCCCTCGACAGTCGGGTTCTTCACGCTGTTAAGTTTTACTGCCAGAACTTTGCTCCCAGTTTCAAAGAGAGCGAAATGAACGCAATCGCTGCAGACATGTGCACGAACGCACGGCGCGTGGTCCGCAAGAGCTGGATTCCCAAACTAAAGCTTCTAATGGCAGAAAGCGACGCTTACGCCAACTTCCTTTCAGACGCCGCCAAACTGGAGTCTGACGGCTTGGGAGTGGAGAATGCTTTTGAAACGGGATCCCTGGAAGGTGGTCCAGCCTCTGAATCAGGCCAGTCATCTGCAGATGCCCTGCACGGCGTTAGCGGGGATGGTAGCAGCTTGTTTTAGTGAGTAACACTAACCATGGTTCAGCTATTCTTTCCCTTCTCCACTCCTCCAATGCATCCCAGTCTCACTTTGGCCGTTGTTATCAGGGAATCGCCATGTGTATCTTTAAGAAGACCGTTATTGAGTTTGATTTCCAAAAAGCTGGTAGTTTTTATGTTTTGATTGTACCTTGAAGGCTCTCCTCTTCATACTGCAGAAATACATTCCTGAAGAGAAGGGACCTATGGGAACATTTAAGGGTGAACCCAAGGGGAAATGGTGTCTGGAAGCGTCTATTCAGTGTACAAACACTGTCATGATTCTGAATGTATCTTTTTATGGAGAATGCAGAGAGTGAATATTGCTGGACGTCAGATTGTATTCATCTGTTAATATTTAATAGCTGTGTATTTGCTTCCTGGACTCCATTTCCTCTTTTAAACAccctttaatgttttgtttttctgtttttatttgtaatttttggcCAAACTGTTCCTTCATTTGTCTTGCCAAGTATCCCGAGAGAGGAAGTTTGTATTGATTGTTCTGAATTTGTATGAGGCAGATGAATCTGTTTTGGTATATCTGAAACTACTGTTGTGTTTTGATAGAGAGAGACTGAAGATTCTCGCCCTTTGAATCAATGAATTCGAAATAGCTATCCATGTGTTTTTGCGTTAGCGAAATCCAAGATTATTTCAGCCTTTTTATTTTGGTATATTACCAAAGCTTAAAATTGGTTTTGTTAAATCAAATCTGGAAGTTTTTAATGTCAAAGCGAATCCCAAAAGCTTTAACAATAGTCTTTATTTCCTTAGTAGTTTTGTATAGATGACGCAGGACTGGCATTGCgctgtataaatgtgtgtatggcGACTGCAGATGGTAGTTTTGATGCAGCTGACTGCTTCATGCACCTTTGGCAGGAGTGTGGTGCATGATGCTGCATTCTGACATGCTACGCCTCAGCGCCTTTGACAGAGATGCACTAAATGCTCTGATGAAGTGGGCCGAGTGCAGTATTAGAGATTGGCACTGAACAGGCATCGGTGTCACAGCTATTGTGGTTCTAAACCACTAAAACCACTCTGAGAGTGGAAGCTGTTTTATAggcttttttaaaagttttttttttttttttagtttttaagtaTGTCAAAAGGAGAAGTTCTTGAAGTCTCTAAATAAAGAGATGTTTTAACCCCAGACTTCAAGAAAGCATGTTGTTGCACCCCTGAAATATTTGGGGATGCGTTAAAATTTGATTCCCAAAGTATGACCTGTCTCTTCAGGTGTTTTAAGCACACTTatattttgtttgaatatttGATCATGGCTGAAGAATGGCATAATATACAAAATTGTTAGAACCTAAATGCTCAATTATTAGCACAAAAGTGGGTTGTAAGAGTTAACGTTTtatgttttttactttaaagtagtagttcaccccaaaaacaCCCAAGTTCAGTTGGAGTTTCATTTTACAGTTACTCATGCAAATATTTTCATGCTGAGAAACTACTTTGAAGCTACTTTGCATGCACAAAAAATCTAAAGTGTAGAAGCTAAGAATATTGGTATCCAAACAGTTTTCTTAACACCTGCAACGTTTACAtgtacatcagtaatcaaattgtttGCCTTACTCTGAatgagacaataatatgattaagttgTTGACATGA
>TCONS_00008069
ATGGCTCAGATGCTGCAGATGGCGATTCCCAACTTTGGCAACAATATCTTGGAGTGTCTTAATGAGCAGAGGCTTCAGGGACTGTACTGTGATGTGTCAGTTGTGGTGAAGGGACACACATTTAAAGCCCACCGGGCAGTGCTGGCTGCCAGCAGCTCCTATTTTCGAGATTTGTTCAACTCTGGAAGCAAGAGCTCTGTGGTGGAATTACCGCCAGCGGTCCAACCTCAGAGCTTCCAGCAGATCCTTTCCTTCTGCTACACCGGTCGACTTAGCATGAATTTAGGCGATCAGTTCCTCCTAATGTACACAGCGGGATTCCTGCAGATTCAGCAAATTATGGAAAAAGGTACAGAGTTCTTCCTAAAGGTCAGCTCGCCAAGTTGTGACTCGCAGGGTCTTCACACAGAAGATGCGCCACCTTCAGAACCCCAAAGTCCTGTTACCCAAACTGGGACTGGCTCTATAGGTATGGGTGGGTCAACAGCAGCTCGACCTGCATCCTGCCAAACACCACTTCCATTAGTGTCAAGAGTTAAGACGGAGCAGCTACCACAGGCCCCTCAGCCACTTCAAGAAGCATCATCATATTCGGTAGTTTGCACTCCAGTTGCTAAGCGCCTTTGGGAAGGAGGCAACCGTGAAGGAGGTGGAGGATCAGGAGGAAGTGGAGGTGGAGGTGTGAGAAAAGCAGCACGTTATTCGCAGGAAGTGGTACGAAGTGTGGGCGGGGCACAGCCTCAAAGCATCGCTTTATTGGGCGGAAGTGGCACAACTAAtagcaacagcaacaacaataataacaacaacagcagtaGCACGCCGGAAGGCACCAGCCCAGGAACTCCCAGCATGTACACCAGTGACTCGCCAATCTCTTaccatgatgatgatgaagaggaggaaatCCCGGATGAAACGACAGAAGAACAGTACAGACAGATCTGTAATATGTACACTATGTACAGCATGCTGAATGTAGGGGCAACTGCTAACGAACGAGTGGAATCACTTCCAGACCACCTCACCGTTGAATCAAGAGGAAGAGGAGTTCGAGTGAGGCAAGATCTGGCTTCTCTTCCCACTGAGCTCATTGCACAGATCGGAAACCGCTGTCATCCTAAACTGTATGAAGAAGGTGACCCTGCTGAGAAACTGGAGCTAGTAACAGGCACCAGTGTTTTTATTTCACGTGCTCAGCTGATGAACTGCCACGTTAGTGCGGGCACACGCCACAAAGTGTTGCTCCGGCGGCTCCTGGCTGCCTTTTTTGACCGAAGCACTCTTGCAAACAGCTGTGGTACAGGCATTCGTTCCTCCACCAACGACCCAAATCGCAAGCCCCTCGACAGTCGGGTTCTTCACGCTGTTAAGTTTTACTGCCAGAACTTTGCTCCCAGTTTCAAAGAGAGCGAAATGAACGCAATCGCTGCAGACATGTGCACGAACGCACGGCGCGTGGTCCGCAAGAGCTGGATTCCCAAACTAAAGCTTCTAATGGCAGAAAGCGACGCTTACGCCAACTTCCTTTCAGACGCCGCCAAACTGGAGTCTGACGGCTTGGGAGTGGAGAATGCTTTTGAAACGGGATCCCTGGAAGGTGGTCCAGCCTCTGAATCAGGCCAGTCATCTGCAGATGCCCTGCACGGCGTTAGCGGGGATGGTAGCAGCTTGTTTTAG

Function

symbol description
nacc1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human NACC1 (nucleus accumbens associated 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121212-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human NACC1 (nucleus accumbens associated 1).

Ensembl:

ensembl_id ENSDARG00000078238

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008068 False 3794 mRNA 0.46 5 31218956 31234584
TCONS_00008069 True 1680 mRNA 0.51 4 31220626 31226578

Neighbor

gene id symbol gene type direction distance location
XLOC_004212 NA coding downstream 7648 31204925 ~ 31211308 (-)
XLOC_004211 NA coding downstream 16117 31200219 ~ 31202839 (-)
XLOC_004210 si:dkey-238i5.3 coding downstream 46680 31168697 ~ 31172276 (-)
XLOC_004209 si:cabz01069582.1 coding downstream 72148 31144720 ~ 31146808 (-)
XLOC_004208 ier2b coding downstream 179423 31038409 ~ 31039533 (-)
XLOC_004214 man2b1 coding upstream 23532 31258116 ~ 31276080 (-)
XLOC_004215 AL844172.2 coding upstream 634436 31869020 ~ 31872628 (-)
XLOC_004216 NA coding upstream 915634 32150218 ~ 32157526 (-)
XLOC_004217 NA coding upstream 1131328 32365912 ~ 32391388 (-)
XLOC_004218 NA coding upstream 1222732 32457316 ~ 32563722 (-)
XLOC_004063 CR854846.1 misc downstream 15091278 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 18527265 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 18597189 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 18627660 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 18705694 12512966 ~ 12513262 (-)
XLOC_004200 CR318645.1 non-coding downstream 1117699 30101142 ~ 30101257 (-)
XLOC_004198 CU652893.1 non-coding downstream 1257055 29961114 ~ 29961901 (-)
XLOC_004193 NA non-coding downstream 1481709 29734578 ~ 29737247 (-)
XLOC_004219 NA non-coding upstream 1238199 32472783 ~ 32473383 (-)
XLOC_004221 BX000696.1 non-coding upstream 1496581 32731165 ~ 32737593 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G433715 NA non-coding CI01000306 null 6275371 ~ 6277148 (+)