LOC110517712 (LOC106574369)


Basic Information

Item Value
gene id LOC110517712
gene name LOC106574369
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493662.1
NCBI id JAAXML020000566.1
chromosome length 1797194
location 839539 ~ 866848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972180.1
CTCTCTGTCGTCTGTCTGTGTGACAGTGAACAACCGTCCAAATGGCTCAGCAGGGAGATCTGCTGGACCAGGAccagttctgttgttctgtctgtctggatctacTGAAGGAGCCGGTCACTACTGCCTGTGGACACAATTACTGTAGAATCTGTATTGAGGGCTGCTGGGATCAGGATGATCTGAAAGGGGTCTATAGCTGtcctcagtgcagagagacttTCGCTCCAAGGCCTAATCTGAGGAAAAATAACATGTTGGCTGAGCATGTGGAGAAACTGAAGAAGACAGGACACCAGGCTGCTCCCCCTCCTGCTCTGTGCTAtgctggacctggagatgtggtgtgtgatttctgcactgggaccagaaagcagaaagccctcatgtcctgtctggtgtgtctggcctcttactgtgagactcacctcCAACCTCACTATGAATTTCCTGCTTTGAAGAAGCACAAGCTGGACAAAGCCACCGCACACCTACAAGAGAAGATCTGCTCTCATCATGacaaactgctggaggtttaCTGTCGTACCGATCAGCAGTGTATCTGTCTGCTGTGTACAATGGATGAACATAAAGGCCATGATACAGTGtcagctgcagcagagaggactgagaaacagAGGCAGCTGGGGATGAGTCAGCAGAAGGTCCATCAGagattccaggagagagagaaggagctgaaGGAGCTCCAACAGGCTGTGGAGTCTCTCAAGaggtatcagtctctctccagtatcaGTGTATCTTCAGACTTATCCAGCATCGTTGTCCGTCCTCTTCAGTACTTtggagatgtgagtaagactgtgtctgaactgagagagaaactagaagacttccttaaaggagaatggaccaagatctccactacagtgaatatagtggatgttgtactgcctccagagcccaagaccagagaacagttgttacaatattcctgtcagctcacactggacccaaacacagcacacacacgcctctctctgtctgaagggaacagaaaggtgacCTTTACAGACCAAGTCCAACCATATCctgaccatccagacagattCACCTACTGTTGGCAGgttctgtgtagagagggtctgtctggatgctgttactgggaggtggagaggactggtggtgttgttgttccAGCAGTCTCATATAAAGACATCAGCAGAACAGAGGATGATGGTGGATTTGGACTCAATAACAAGTCCTGGAGTTTAGAGTACTATAGTGGTGGTTATTGTTTCAGACACAATAATGTTGTGACTAAAGTATCAGGTCCTCAGTcctccagagtaggagtgtacctggatcacaaggcaggtactctttccttctacagtgtctctgaaacaatgaccctcctccacagagtccagaccacattcactcagcccctctatcctGGGTTTTGTTTCAATTCTATTTTCGATGGTtctgctgagctggttaaactgtaggagggtccacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgta
>XM_036972181.1
TCTCTGTCGTCTGTCTGTGTGACAGTGAACAACCGTCCAAATGGCTCAGCAGGGAGATCTGCTGGACCAGGAccagttctgttgttctgtctgtctggatctacTGAAGGAGCCGGTCACTACTGCCTGTGGACACAATTACTGTAGAATCTGTATTGAGGGCTGCTGGGATCAGGATGATCTGAAAGGGGTCTATAGCTGtcctcagtgcagagagacttTCGCTCCAAGGCCTAATCTGAGGAAAAATAACATGTTGGCTGAGCATGTGGAGAAACTGAAGAAGACAGGACACCAGGCTGCTCCCCCTCCTGCTCTGTGCTAtgctggacctggagatgtggtgtgtgatttctgcactgggaccagaaagcagaaagccctcatgtcctgtctggtgtgtctggcctcttactgtgagactcacctcCAACCTCACTATGAATTTCCTGCTTTGAAGAAGCACAAGCTGGACAAAGCCACCGCACACCTACAAGAGAAGATCTGCTCTCATCATGacaaactgctggaggtttaCTGTCGTACCGATCAGCAGTGTATCTGTCTGCTGTGTACAATGGATGAACATAAAGGCCATGATACAGTGtcagctgcagcagagaggactgagaaacagAGGCAGCTGGGGATGAGTCAGCAGAAGGTCCATCAGagattccaggagagagagaaggagctgaaGGAGCTCCAACAGGCTGTGGAGTCTCTCAAGaggtatcagtctctctccagtatcaGTGTATCTTCAGACTTATCCAGCATCGTTGTCCGTCCTCTTCAGTACTTtggagatgtgagtaagactgtgtctgaactgagagagaaactagaagacttccttaaaggagaatggaccaagatctccactacagtgaatatagtggatgttgtactgcctccagagcccaagaccagagaacagttgttacaatGTAAAGGTGTGTCAAATGGAAGGGCAAGTCTCACCACTGAGAGGAAAACATCACTGGTCCACCTCTGCATCAGAAAAGGGGGTTTCATTATCTCTCGTTGGAATGTCCCCGGAGACTGTGGTATCGGGGAGAGCAGTATAAAAGTATCTGGATTAGGCCATAAACAGACTTCCAGATAAGTGAGGCCTTGTTCAGGTGTGTTTTTGACCTACGGttcaccagcacacacacacaatttactgGTTACCAATATGCATTAGTGGTGTTGATACTGTGGGATTTATCTTGGATGGGGTCTTTTCAATTCAGTTGTAAATTGGGTTTGCAGAAGGATGGAAATGTTTGGAAGGTTTTGAAATGGTTTGTGAAGGACAGGGAAAGAAAAGGGAGAGGGAATATTTAATGGTGTCAAATGCCCTGTATCCTGACTTTCTGGTGAGACCAGAACAATCTCACTAGAAATGATAGAAACAGGTGGGAATTAATTATAAAATGAATGAGAAACACAAGTTTCTACTCTATTTAACCATTGCTTTATGAGATAAGTTGATT
>TU2673992
atttaatgatgagagtaaaggacagtggatttacaattatcatgtttggcTTATAATTCATACTTTTGGCTTGCTGATTAATATGTAACATAGTGAATGCTAACGAAATGTACAATTTCTTTTCCAGAAAAGGGGGTTTCATTATCTCTCGTTGGAATGTCCCCGGAGACTGTGGTATCGGGGAGAGCAGTATAAAAGTATCTGGATTAGGCCATAAACAGACTTCCAGATAAGTGAGGCCTTGTTCAGttggagactggagcacactgcagtccctttcaggtccatagggttttactgccccctgctggagactggagcacactgcagtccctttcaggtccatagtgttttactgccccctgctggagactggagcacactgcagtccctttcaggtccatagggttttactgccccctgctggagactggagcatactgcagtccctttcaggtctatagggttttactgccccctgctggagactggagcacactgcagtccctttcaggtccatagggttttactgccccctgctggagactggagcacactgcagtccctttcaggtccatagggttttactgccccctgctggagactggagcacactgcagtccctttcaggtctatagggttttactgccccctgctggagactggagcacactgtaGTCgctttcaggtccatagggttttactgccccctgctggagactggagcacactgcagtccctttcaggcccatagggttttactgccccctgctggagactggagcacactgcagtccctttcaggtctatagggttttactgccccctgctggagactggagcacactgcagtccctttcaggtccatagggttttactgccccctgctggagactggaacacactgcagtccctttcaggtccatatggttttactgccccctgctggagactggagcacactgcagtccctttcaggtccatagggttttacttCCCCCTGCTATGACGGATCCAACAAATATCCCCAGGTCCCATCTCATCCAACACATCAATGACTCTtataggagggagggagcattACCCATGTTAAGCTATGAAATGAACTGGACATTTTATGGTGAATTTTAATACAGATTTACTTTAATACATTAATAATTTCTTGAATGTAATTAGTTTgtgttttgtaattatgttattgAAACAGAATAAGTCAGTAATGAGGGAATAAATAAGTCCAGTCCAACAAtgacctctctcctctttctcatccctctatcatcactccatgggcgagtacaaccattacctctctcctctttcacatccctctatcatcactccatgggggagtacaacc

Function

NR:

description
Tripartite motif-containing protein 25

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972180.1 False 1539 mRNA 0.48 5 839539 848942
XM_036972181.1 False 1505 mRNA 0.46 6 839540 865672
TU2673992 True 1360 lncRNA 0.48 2 865067 866848

Neighbor

gene id symbol gene type direction distance location
LOC110518290 LOC106561472 coding upstream 38619 755796 ~ 800920 (+)
LOC110491257 NA coding upstream 38621 789534 ~ 892453 (+)
LOC110516269 NA coding upstream 156547 666560 ~ 682992 (+)
LOC110519397 NA coding upstream 197385 640728 ~ 642816 (+)
LOC118947079 NA coding upstream 266125 516802 ~ 573414 (+)
LOC110499824 NA coding downstream 89105 954777 ~ 960598 (+)
LOC118947076 NA coding downstream 171685 1037357 ~ 1037794 (+)
LOC118947086 NA coding downstream 187657 1053329 ~ 1054233 (+)
LOC118947088 LOC106593566 coding downstream 215417 1081089 ~ 1098264 (+)
LOC118947084 NA coding downstream 251030 1116702 ~ 1135344 (+)
G2336529 NA non-coding upstream 14415 384477 ~ 825124 (+)
G2336397 LOC106587643 non-coding upstream 15751 737769 ~ 823788 (+)
G2336336 NA non-coding upstream 16598 697694 ~ 822941 (+)
G2336465 NA non-coding upstream 17157 822109 ~ 822382 (+)
G2336635 NA non-coding upstream 26594 812158 ~ 812945 (+)
G2336285 NA non-coding downstream 2715 868387 ~ 1166752 (+)
G2336432 NA non-coding downstream 4223 869895 ~ 892306 (+)
G2336329 NA non-coding downstream 8441 874113 ~ 1597825 (+)
G2336381 LOC106587644 non-coding downstream 24972 890644 ~ 901043 (+)
G2336295 NA non-coding downstream 35547 901219 ~ 986684 (+)
G2336431 NA other downstream 490231 1355903 ~ 1389866 (+)
G2336736 NA other downstream 621792 1487464 ~ 1488419 (+)
G2336367 NA other downstream 712568 1578240 ~ 1581200 (+)
LOC110515277 NA other downstream 892031 1741320 ~ 1761572 (+)
G2336646 NA non-coding upstream 1691 862867 ~ 863376 (+)
G2336575 NA non-coding upstream 3813 568181 ~ 861254 (+)
G2336645 NA non-coding upstream 5515 859030 ~ 859552 (+)
G2336643 NA non-coding upstream 6910 853617 ~ 858157 (+)
G2336358 NA non-coding upstream 7633 531304 ~ 857434 (+)

Expression


Co-expression Network