LOC110499824


Basic Information

Item Value
gene id LOC110499824
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493662.1
NCBI id JAAXML020000566.1
chromosome length 1797194
location 954777 ~ 960598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972173.1
CTGATCTGAGTCGCTGTGTCGTCTGTCTGTGTGACAGTGAACAACCGTCCAAATGGCTCAACAGGGAGTTCTGCTGGACCAGGAccagttctgttgttctgtctgtctggatctacTGAAGGAGCCAGTCACTACTGCCTGTGGACACAATTACTGTAGAATCTGTATTGAGGGCTGCTGGGATCAGGATGTTCTGAAAGGGGTCTATAGCTGTCCTCAGTGCAGAGAGACCTTCACTCCAAGGCCTAATCTGAGGAAAAATAACATGTTGGCTGAGCTGgtggggaaacagaagaagacaggactccaggctgctccccctcctgctctgtgctatgctggacctggagatgtggtgtGTGATTCctgcactgggaccagaaatcagaaagccctcatgtcctgtctggtgtgtctggcctcttactgtgagactcacctcCAACCTCACTATGAATCTCCTGCTTTCAAGAAGCACAAGCTGGTCAAAGCCACGGCACAACTACAGGAGAAGATCTGCTCTCATCATGacaaactgctggaggtttaCTGTCGTACCGATCAGCAGTGTATCTGTCTGCTGTGTACAATGGATGAACATAAAGGCCATGATACAGTGtcagctgcagcagagaggactgAGAAACAGAGGCAGCTGGGGATGAGTCAACAGAAGGTCCAGCAGagattccaggagagagagaaggagctgaaggagctccaacaggctgtggagtctttcaagcgctctgcacagtcagcagtggaggacagcgatcagatctttactgagctgatccgctccattgagagaaggagctctgaggtgaaggagctgatcagagcccaagagaaggctcaagtgagtcaagctgaaggactcctggagcaactgaagcaggagatagctgagctgaggaagagaagcactgagctggagcagctctcacacacagaggatcacatCCATTTCCTCCAGagttatcagtctctctccagtatcagtgcatcttcagacttacccagcatcgttgtccgtcctcttcagtactttggagatgtgagtaagactgtgtctgaactgagagagaaactagaAGACTTCCTTAAAGGAGAATGGACCAAGATCTCCACTACAGtgaatatagtggatgttgtactgcctccagagcccaagaccagagaacagttgttacaatattcctgtcagctcacactggacccaaacacagcacacacactcctctctctgtctgaagggaacagaaaggtgacCAATACAGACCAAGTCCAACCATATCctgaccatccagacagattCACCAACTGGTGTCAGgttctgtgtagagagggtctgtctggacgctgttactgggaggtggagTGGACTGGTGATGTTATTACAGCAGTCTCATATAAAGACATCAGCAGAACAGGTAATGATGGTAGATTTGGATACAATAACAAGTCCTGGagtttacagtactatagaggtGATTATTGGTTCAGTCACAATAATGTTGGGACTAAAGTATCAGGCCCTCAGTcctccagagtaggagtgtacctggatcacaaggcaggtactctgtccttctacagtgtctctgacacaatgaccctcctccacagagtccagaccacattcactcagcccctctatcctGGGTTTGGTCTCAATGGTactgctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtgtagtctatatctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtggagtctatagctgagctggttaaa

Function

NR:

description
fish virus induced TRIM protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972173.1 True 2322 mRNA 0.48 6 954777 960598

Neighbor

gene id symbol gene type direction distance location
LOC110517712 LOC106574369 coding upstream 89105 839539 ~ 866848 (+)
LOC110518290 LOC106561472 coding upstream 153857 755796 ~ 800920 (+)
LOC110491257 NA coding upstream 153859 789534 ~ 892453 (+)
LOC110516269 NA coding upstream 271785 666560 ~ 682992 (+)
LOC110519397 NA coding upstream 312623 640728 ~ 642816 (+)
LOC118947076 NA coding downstream 76759 1037357 ~ 1037794 (+)
LOC118947086 NA coding downstream 92731 1053329 ~ 1054233 (+)
LOC118947088 LOC106593566 coding downstream 120491 1081089 ~ 1098264 (+)
LOC118947084 NA coding downstream 156104 1116702 ~ 1135344 (+)
LOC110503177 NA coding downstream 252206 1166084 ~ 1230272 (+)
G2336658 NA non-coding upstream 4841 949625 ~ 949936 (+)
G2336656 NA non-coding upstream 10004 941147 ~ 944773 (+)
G2336657 NA non-coding upstream 10547 941395 ~ 944230 (+)
G2336655 NA non-coding upstream 15247 935900 ~ 939530 (+)
G2336438 LOC106587643 non-coding upstream 24110 929004 ~ 930667 (+)
G2336368 NA non-coding downstream 702 961300 ~ 1320881 (+)
G2336660 NA non-coding downstream 4484 965082 ~ 1232715 (+)
G2336661 NA non-coding downstream 7581 968179 ~ 968646 (+)
G2336663 NA non-coding downstream 9852 970450 ~ 971346 (+)
G2336362 NA non-coding downstream 11977 972575 ~ 1009916 (+)
G2336380 LOC106561472 other upstream 20929 482931 ~ 933848 (+)
G2336431 NA other downstream 395305 1355903 ~ 1389866 (+)
G2336736 NA other downstream 526866 1487464 ~ 1488419 (+)
G2336367 NA other downstream 617642 1578240 ~ 1581200 (+)
LOC110515277 NA other downstream 797105 1741320 ~ 1761572 (+)

Expression


Co-expression Network