LOC118947141 (LOC106595224)


Basic Information

Item Value
gene id LOC118947141
gene name LOC106595224
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493666.1
NCBI id JAAXML020000359.1
chromosome length 1258143
location 820448 ~ 824848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036972400.1
ATGGCAGCCTGGTACGACTGCCTCCTCTTGAAGGACAGGACCCTGACAGATTACGAGAAGGAAAAGCTGGACCGTGTGAACGTGAGAGCCGGCAGCGCCGAAGGTGGCGATGTGACTATAGGCCCAACGGACAGTCTCTTCACCAGACCCTTGTATGTGCCGTTAACGCACTACCACCATCTCGACGCCCTATTAGCCATCATGGCGTGCTACGTCTCCCCGAGAGTGAAAAGTTTGTGCGACTATCCCagTGACCCCGGGCAGGGTTACGAGTTGATCACCcgtgtctgtgtgggtcagagAGACCCTGGCAGCCTTAGCAAGGTGTATGTTGTAACCCTCCTACCCCTGTCTGGGCCGGGTCATAGTGACCCCGGCCAGCGTTACGAGTTGATTCCCCccctgtctgtgtggAGTGACCCTGGCACCACTTGTCCACAAGAACTCAGTGCAAGACCTCGTTGCAATCACACGGGGAGGCCTGCCAAGCGTACCGGAGGGGCCGAAGGGTCCGAAGGAGCAGACAGGGCCGACCGCTCGCGTGCCTCGTCCGCTCGCGTGCCTCGTCCGTTCGCGTGCCTCGTCCTATTCACGTGGCCACTgaagaagaagaagaagaagaagaagaagaagatgaggaCTATGATGAggacgatgatgaggaggaatACGACCCCGCCGAGCGCGAGCCCTCCGCCTACGACGCCTCGCAGTCCTTGTTTGAGCGCGGCTCAGGTCCTGGAACAGATATCCTCCAGTGTCGACCAAGAAGACGAGGAAGACTACATGGAATCCGAAGAGGAGGACGTTTCGGAAGATGAAGACGGTGAGGAATACAACCCCGAGCGTGATGcggacgacgacgacgacgactcGGCCTCACGGTCGTGCTCCTCTTcggaggaagagcgagagggagagcgagagggagacacgGCCGCTGCccgagagcgagacacagccagagagccagagcgagacagagaggacgCGGCGGCAGCCGCCCGAGCCCAAAGGGAGACGTTGCTGTCAAAGAACGGCAAAATCAAATGGTCCTCCGTGGCCTATCGCGGCCCGGACCGGACCCGCGCCATCCGCCGCCCCCGCTCCGTCGTGACGCCGGGCCCCACGGCCTACGCCGCGTCGCGAGCGCTCGACATCGAGTCCGCCTTCCGGCTGTTTGTCACACCGGCGATAGAAAGGATCATTGTGGACATGACAAATCTGCAGGGGGTGAGAAAATACGGCGACGGCTGGCGACCCATGGACTCCACCGACCTGCGCGCCTACGTAGGGCTGCTGATCCTAGCCGGCGTCTACAGGTCCCGAGGCGAGGCCGCGGCCAGCCTGTGGGACGCCGAGAGCGGCAGGACCGTGTTCCGCGCCACCATGCCGCTCAAGGTGTTTCACAAGTACTCGAGGCTGCTGCGATTCGACGACCGCCAGTCGAGACCCGCCAGACTCGCCACCGACAGACTGGCGGCCATAAGAGAGGTATGGGACCTGTGGGAGGAGCGGCTGCCGGCCCTCTACAACCCGGGGCCCGACCTGACGGTGGACGAACAACTGGTCCCGTTCAGAGGACGCTGTCCTTTCCGACAGTACATTCCCAGCAAGCCGGCCAAATACGGCATCAAGTCGTGGGTGGCCTGCGACGCCAAGTCCAGCtacgcttggaagatgcaagtctacacCGGCAAGGCGGCCGGCGGAGGCCCCGAGAAGAACCAGGGCGCCCGCGTCGTCCTCGATCTGACCGAGGGACTGCCGGGCGGTCACAACGTCAcgtgtgacaatttcttcacctccTACGAACTGGGCCAGCGGCTCCTCGAGAGGAACCTCACCATGGTGGGCACGGTGAGAAAGAACAAGGCCGAGCTCCCGCCCGCGCTGCTCCAGTCAAAGGGCAGACAGGTCCTGTCCTCCAGGTTCGCCTTCACGCCCACCGCCACTCTAGTGTCCTACCTGGCAAAGAGAAATAAGAACGTGCTACTTCTGAGCACGCTGCACGCGGAGCCCGACGTTAGCGATCGCCGCGACCGGAAGCCGGCCCTCATCCTAGACTACAACTGCAACAAGGGCGGCGTGGACAACCTAGACAAGGTGGTCGGGACCTACAGCTGCAGACGGATGAccgcccgctggcccctggtcatcttccacaaCATCCTCGACGTGTCCTCCTACAACGCCTTTGTCATATGGCGAGAGATCAAGCCCGACTGGATGCCTGGGaagcggaacaagaggagggtgttcctggagcagctcggAAAGGCACTCGTGAAGCCCTTGATACAAAGAAGGCAGCGGCTCCCCCGCACCCAAGCCGCGTCCGCACTTGTCAAAGTCCTACAGAGTGCCACCGCCGAGGCTCGTCCGCCAGCCCGGGAGCAAGCCGCTGGCCCGGCCGCCGCCGCCCCAGCCGCCCCGCCGGTGGCGAGTAAGAGGAAGAGGTGTCAGCTCTGCCCACCCAAGAAGGACGCCAAGACCTACACCGCGTGCTGCAGGTGTaacaaatacatctgcaaaggctGTTCACACGCATACTGTCAAACTTGTGCCCACTGGGCCTTTAGCCAAGACGGGACAGGGTGA

Function

NR:

description
piggyBac transposable element-derived protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036972400.1 True 2601 mRNA 0.62 5 820448 824848

Neighbor

gene id symbol gene type direction distance location
trnar-ucg-75 NA coding downstream 145018 675358 ~ 675430 (-)
trnar-ucg-74 NA coding downstream 147182 673194 ~ 673266 (-)
trnar-ucg-73 NA coding downstream 148970 671406 ~ 671478 (-)
trnar-ucg-72 NA coding downstream 150039 670337 ~ 670409 (-)
trnar-ucg-71 NA coding downstream 150389 669987 ~ 670059 (-)
LOC118947142 LOC106596281 coding upstream 4614 829462 ~ 837281 (-)
LOC118947146 NA coding upstream 24360 849208 ~ 851265 (-)
LOC118947149 LOC106581842 coding upstream 30125 854973 ~ 857555 (-)
trnat-ugu-110 NA coding upstream 64129 888977 ~ 889048 (-)
trnaa-ugc-246 NA coding upstream 64872 889720 ~ 889791 (-)
G2340897 NA non-coding downstream 822 811254 ~ 819626 (-)
G2340903 NA non-coding downstream 2634 810062 ~ 817814 (-)
G2340902 NA non-coding downstream 4045 808537 ~ 816403 (-)
G2340923 NA non-coding downstream 16069 799794 ~ 804379 (-)
G2340925 NA non-coding downstream 27814 788819 ~ 792634 (-)
G2340949 NA non-coding upstream 51184 876032 ~ 992003 (-)
G2340968 NA non-coding upstream 92157 917005 ~ 921098 (-)
G2340974 NA non-coding upstream 108643 933491 ~ 935264 (-)
G2341006 NA non-coding upstream 181075 1005923 ~ 1040396 (-)
G2341021 NA non-coding upstream 233957 1058805 ~ 1115633 (-)
G2340905 NA other downstream 5793 806890 ~ 814655 (-)
LOC110514508 LOC106595224 other downstream 703732 114200 ~ 116716 (-)
G2340407 NA other downstream 757310 62414 ~ 63138 (-)
G2340951 NA other upstream 53961 878809 ~ 929132 (-)
G2341053 NA other upstream 333750 1158598 ~ 1164054 (-)

Expression


Co-expression Network