XLOC_000435 (sparcl1)


Basic Information

Item Value
gene id XLOC_000435
gene name sparcl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 37391141 ~ 37419873 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000761
GTGCAGATGAAGGGCATCTGATGTACAGTTCTGAGGGTGGAGGCATAAGGAAGCGAGAGGTGCTTTGACTGACTGCCTCTCTCTGATTCTTCTATCAtcaaacacacagctaaaAAATGAAGAAAGAGGTGTTTCTCTTCTGCTTTTTGGTAACAGCACTGGCTGCATATGTACAAAGTAAGCCTCATGGAAAGAAACAGCACATCAAGCACATTGCGACTCCAAAAGAGCAgTCAGAGTCAGTGAAGCTTCATGGCAGTATGGATGGAGTCCTGCCCACGTTTCTGCCTTTTGAGTCTAGCACTCAGGATGAAGACACGAGCGAGGAGACTGAGAGCCGTGTGGAGATGAACCAAGCGGAGGCAGAAGAGCCTGAAGGTTCAGATGGAGGTGAAAAGAAGGAACCTTTACTCCTGAGTGATGAGGCATTGACTCAGCTCCTGCAAGAACCCGtggaggaggatgaagatgatcaTTCTGAGAGTCTGGAGAAAGATGAAGTGATGGACAAGGTGGAGCAGTCAACAGAAGATGGAGAATCCAAAACCGAGACTGAAAACGAGGCTGAGAGCAAGGAAGAGGATTCAAAGGACACAGACAGCAGTACTGAGTCAGAGATACCAATGGATTTGGACTACACAACTGACAGAGATGCTTCTCAGCCACTACCAATCAAACTGGATGAGGCTAAAGTTTTAACCACTATGGAGGACACGGTTGAAGATGTAATCCCCACAGCCACAGCAAGCTATGAATCCCAGCAATCCAACAGCGACATTGCAGAGGAACAAGAGGAACTAGAAGACCAAGCTCAAGAGGAGTTGAAAGAACCTGAGAATGACATTGAAAAGGGGAAGAATGATCAGCAGGATGAGAAGAACATCCTTGAACCTGGTATTTCTGAAGGCAAGATGGCTAAAAAGGATAAGAAGAAGAATGAAAGTAAAAGCAATGGAAAGGGAAAAGGCAAAAAACAGCGGAACAGTGAGCTGCTTGAGAAGATGCAGAGTGACCAGGCCGGTGCAATAGAAGACACTGAAGAACTTGCTCAGAAGAAAGACCAAGAAAAAGTGACAGAGGCCACTGAAAATACAGAGTCCAAACCCAGAAAGAAGAATGGCAAATGGACTCGCTTGGTGGGGATGAATCCAGTACAGATTAGGGCCACTATGGATCTTTACCCAGATGTTCGCCTCACCCGTCACTCCAATGGGCAGGGGGTGCCAGCTGACCCCTGTGAAAATTTCCGCTGCAAAAGAGGGAAAACTTGCAAACTGAACGATGAGAACAAGCCCCTCTGTGTGTGTCAGGAGCCGACAGAATGTCCTCCTAATGTAAACGATTTTGAACATGTCTGCGGAACTGACAATAAGACATATGACTCATCTTGTCACCTTTTTGCTACCAAGTGTGGTCTTGAGGGAACCAAATTAGGTCACAGGCTTCATCTGGACTACACTGGATCATGCAAATTTATTGCTCCATGTGTGGAGTCAGAGCTGGTGCAGTTCCCACTGCGAATGCGGGACTGGCTGAAGAACGTGCTTCTGCAGTTATATGAGCATGACTCCATGTCTCCTGGCTTTCTCACAGCTAAACAGAGAATCAGGGTTCAGAAGATCTATGAGAGCGAGAGACGTCTTCATGCAGGAGATCACCCTGTTGAAATTCTGCAGCAGGACTTTGAGAAGAACTACAACATGTACATCTATCCAGTGCACTGGCAGTTTGCACAGATGGACCAGCATCCTTCAGACAGGTTTTTGACTCACTCTGAGCTGGCTCCGCTGCGCGTTCCTCTAGTTCCCATGGAGCATTGCACCTCAGTCTTCTTTCAAATGTGTGATGCCGACAAGGACAAACTGGTCTCCTTCAAAGAGTGGTGCAGCTGCTTTGGCATTAAGGAAGAGGATATGAATACCAATCTGCTGTTCTGAGCTCTGATCAACGGGAGCAAAAATAAGGTTTTTCTGATGGAAATATATTGCAGGTAGTAATTGGAGGTCTGTTTGGTGAAAtggtgctgttttgttttttcttctttgtgtTATGATCATGATTGACAAGAATGTCTAGGGTATTTtctgttttaatgcattttgtgtGGCATtagttgttaaaaaaaacaaacaatagttaataatattgtagttttgaacaaaaaatgaacaaaaatgtttagttttagaATGATTTCTAGTATTTTTGTATGCATTCCAGTGGGGGAAAGTTGATATTTTAGTGATTAAAGAGCTGATTTTATAAAGATGTTGGAAAATTATTtgagattataaataaaaattatactaT
>TCONS_00000762
GAGAGGTGCTTTGACTGACTGCCTCTCTCTGATTCTTCTATCAtcaaacacacagctaaaAAATGAAGAAAGAGGTGTTTCTCTTCTGCTTTTTGGTAACAGCACTGGCTGCATATTCAGAGTCAGTGAAGCTTCATGGCAGTATGGATGGAGTCCTGCCCACGTTTCTGCCTTTTGAGTCTAGCACTCAGGATGAAGACACGAGCGAGGAGACTGAGAGCCGTGTGGAGATGAACCAAGCGGAGGCAGAAGAGCCTGAAGGTTCAGATGGAGGTGAAAAGAAGGAACCTTTACTCCTGAGTGATGAGGCATTGACTCAGCTCCTGCAAGAACCCGtggaggaggatgaagatgatcaTTCTGAGAGTCTGGAGAAAGATGAAGTGATGGACAAGGTGGAGCAGTCAACAGAAGATGGAGAATCCAAAACCGAGACTGAAAACGAGGCTGAGAGCAAGGAAGAGGATTCAAAGGACACAGACAGCAGTACTGAGTCAGAGATACCAATGGATTTGGACTACACAACTGACAGAGATGCTTCTCAGCCACTACCAATCAAACTGGATGAGGCTAAAGTTTTAACCACTATGGAGGACACGGTTGAAGATGTAATCCCCACAGCCACAGCAAGCTATGAATCCCAGCAATCCAACAGCGACATTGCAGAGGAACAAGAGGAACTAGAAGACCAAGCTCAAGAGGAGTTGAAAGAACCTGAGAATGACATTGAAAAGGGGAAGAATGATCAGCAGGATGAGAAGAACATCCTTGAACCTGGTATTTCTGAAGGCAAGATGGCTA
>TCONS_00000763
CGGACTTTGAATGTGACTTTTGAGCGGAGCTCATCTCCTGGGCCCTGTTGCCACGACAACTGAGGCGGCTGATTTATGCTGGGATGTCATGGCGGGAGTACGTCCAGCATACAGATGGAGATCTCTGAACCATGTGTGAGAACGGCCCAGAGGCCACGAGAGCTCGATTCTTAGATAGAAAAGAATAGGCAATGGAAAGATCAAGTTTTTTAGGAAGTTTTAAGACAGGACACGGAATTGTGCTGACACCCATACAAagttattattgattttttttcttctcctgtCTAGAAATGAAGAAAGAGGTGTTTCTCTTCTGCTTTTTGGTAACAGCACTGGCTGCATATGTACAAAGTAAGCCTCATGGAAAGAAACAGCACATCAAGCACATTGCGACTCCAAAAGAGCAgTCAGAGTCAGTGAAGCTTCATGGCAGTATGGATGGAGTCCTGCCCACGTTTCTGCCTTTTGAGTCTAGCACTCAGGATGAAGACACGAGCGAGGAGACTGAGAGCCGTGTGGAGATGAACCAAGCGGAGGCAGAAGAGCCTGAAGGTTCAGATGGAGGTGAAAAGAAGGAACCTTTACTCCTGAGTGATGAGGCATTGACTCAGCTCCTGCAAGAACCCGtggaggaggatgaagatgatcaTTCTGAGAGTCTGGAGAAAGATGAAGTGATGGACAAGGTGGAGCAGTCAACAGAAGATGGAGAATCCAAAACCGAGACTGAAAACGAGGCTGAGAGCAAGGAAGAGGATTCAAAGGACACAGACAGCAGTACTGAGTCAGAGATACCAATGGATTTGGACTACACAACTGACAGAGATGCTTCTCAGCCACTACCAATCAAACTGGATGAGGCTAAAGTTTTAACCACTATGGAGGACACGGTTGAAGATGTAATCCCCACAGCCACAGCAAGCTATGAATCCCAGCAATCCAACAGCGACATTGCAGAGGAACAAGAGGAACTAGAAGACCAAGCTCAAGAGGAGTTGAAAGAACCTGAGAATGACATTGAAAAGGGGAAGAATGATCAGCAGGATGAGAAGAACATCCTTGAACCTGGTATTTCTGAAGGCAAGATGGCTAAAAAGGATAAGAAGAAGAATGAAAGTAAAAGCAATGGAAAGGGAAAAGGCAAAAAACAGCGGAACAGTGAGCTGCTTGAGAAGATGCAGAGTGACCAGGCCGGTGCAATAGAAGACACTGAAGAACTTGCTCAGAAGAAAGACCAAGAAAAAGTGACAGAGGCCACTGAAAATACAGAGTCCAAACCCAGAAAGAAGAATGGCAAATGGACTCGCTTGGTGGGGATGAATCCAGTACAGATTAGGGCCACTATGGATCTTTACCCAGATGTTCGCCTCACCCGTCACTCCAATGGGCAGGGGGTGCCAGCTGACCCCTGTGAAAATTTCCGCTGCAAAAGAGGGAAAACTTGCAAACTGAACGATGAGAACAAGCCCCTCTGTGTGTGTCAGGAGCCGACAGAATGTCCTCCTAATGTAAACGATTTTGAACATGTCTGCGGAACTGACAATAAGACATATGACTCATCTTGTCACCTTTTTGCTACCAAGTGTGGTCTTGAGGGAACCAAATTAGGTCACAGGCTTCATCTGGACTACACTGGATCATGCAAATTTATTGCTCCATGTGTGGAGTCAGAGCTGGTGCAGTTCCCACTGCGAATGCGGGACTGGCTGAAGAACGTGCTTCTGCAGTTATATGAGCATGACTCCATGTCTCCTGGCTTTCTCACAGCTAAACAGAGAATCAGGGTTCAGAAGATCTATGAGAGCGAGAGACGTCTTCATGCAGGAGATCACCCTGTTGAAATTCTGCAGCAGGACTTTGAGAAGAACTACAACATGTACATCTATCCAGTGCACTGGCAGTTTGCACAGATGGACCAGCATCCTTCAGACAGGTTTTTGACTCACTCTGAGCTGGCTCCGCTGCGCGTTCCTCTAGTTCCCATGGAGCATTGCACCTCAGTCTTCTTTCAAATGTGTGATGCCGACAAGGACAAACTGGTCTCCTTCAAAGAGTGGTGCAGCTGCTTTGGCATTAAGGAAGAGGATATGAATACCAATCTGCTGTTCTGAGCTCTGATCAACGGGAGCAAAAATAAGGTTTTTCTGATGGAAATATATTGCAGGTAGTAATTGGAGGTCTGTTTGGTGAAAtggtgctgttttgttttttcttctttgtgtTATGATCATGATTGACAAGAATGTCTAGGGTATTTtctgttttaatgcattttgtgtGGCATtagttgttaaaaaaaacaaacaatagttaataatattgtagttttgaacaaaaaatgaacaaaaatgtttagttttagaATGATTTCTAGTATTTTTGTATGCATTCCAGTGGGGGAAAGTTGATATTTTAGTGATTAAAGAGCTGATTTTATAAAGATGTTGGAAAATTATTtgagattataaataaaaattatactaTTATTAGTGTTATGTTTTTTTCATGTCCGCTATACAAACCAAAGCTGCAATTATTTGATCAAGAATACAATAAAGatggtaatattgtgaaatattattacaatagaaaatattatatgtatatttattatataaatatgtagctttGAATGTAATAATTGACActatatattcatataataaatacGTATTTTATAAAGTGGGATAttattacaatacaatataaaataagtatttattaaatgaatattactgtttatttctatagcccttttacaatctagattgtgtcaaagcagcttaacatagaagttctagtaaattgaaactgtgtccgTCTAGTTtgcagagttgaagttcagtttaattcagtttttaaattagcaCCGCTCCACAAGtactaaaccaagcaagccagttgcAACAGCTTGGAGAATATAtagctttaaacataataattgatatttgaatatatattcatataataaatttgcattttatatagtggaatattattacaatataaaataagtatttaatatatgaatatgttttaaatatcAATTATTATGGTCAAAGCTGAATTTTGGTCATCAATGATGATACATCAAAAGtcattctaataataaaaaaaaaagttttaagctttctttctttaaaaacacTTGTATTCAGGAAAGGTTTCCTTAAACAGaccaaaagtgacagtaaaaacatttataatgttacaaaaatcAATTTTAgatattcttattttaaaatgtatactttATTCATCAAAAATCCAGTAAATTAAAattgtagaaataataataacgCTGAAAGTATAGTTTCCaatgttacatttaaatgttatatttaaatatgcacatagaaaacagatatttttaatgtaaatcacatttttagtataacaaaccattaaataaaatgtaatgcttTCAATCTTTGTTTTTCTGAATGAATTTgaagtgaatatatatatttttttaatccaacAGGCATTATTTGACTATTTATAGTTGCACTAAATTAATTAAAGTAccttaaaataatcttaaaatttaaataaactaactttattttcattttgataacaCCTCACTTAAACTTCCAGTTTAATTTGCATCGCAATTTACAGTATATCTCCTCTGTCACAAGCCTTGTAAGCTTTGCTTCTTATACTTCCGGCTGCTACTGTGTTGGTAAAAGAGCTGTGTGGGGTATGACCACTGTaattaaagcaaacaaaaaagaaatgtgtCTGGGGAAAAAAACCCTTAGGAAGTCATTAAATTACTGCTGTCAGAATTGCGTGCAAATGTGAAACACACAATTCAATGATCATGTGACTTCTATGAGCAGTTCATGCATGACATGAGTAGTCTGATTAGACTACTGACTCAAATGATCAATTAACGCTTGATCATTATTGAACAATGATCTTACATCATCGGCTTTTGTAGTTAAGGGGACTTTTTATTTAACCATTTAAACCCCACAACTTAAACACTTATAACTCATAGCAATTGATTTGATAGTCTTCAATTTTtacaaaacaagtaaataaactgtTTCTTAATAATTATTGACATGTATTGACCTTTTATGTGAATTGATGATTTTTTATGTGATTTAATGAATGTCTATATTCAgacacatatttattttaaaaattgc
>TCONS_00000764
TTGAAAGCTACAGTGGATGCTTGAATTGAAGATACAGTGTTTGACAAGATATTTGCACATTCTTTCATTGTTTTATCCAGACCCCTGTGAAAATTTCCGCTGCAAAAGAGGGAAAACTTGCAAACTGAACGATGAGAACAAGCCCCTCTGTGTGTGTCAGGAGCCGACAGAATGTCCTCCTAATGTAAACGATTTTGAACATGTCTGCGGAACTGACAATAAGACATATGACTCATCTTGTCACCTTTTTGCTACCAAGTGTGGTCTTGAGGGAACCAAATTAGGTCACAGGCTTCATCTGGACTACACTGGATCATGCAAATTTATTGCTCCATGTGTGGAGTCAGAGCTGGTGCAGTTCCCACTGCGAATGCGGGACTGGCTGAAGAACGTGCTTCTGCAGTTATATGAGCATGACTCCATGTCTCCTGGCTTTCTCACAGCTAAACAGAGAATCAGGGTTCAGAAGATCTATGAGAGCGAGAGACGTCTTCATGCAGGAGATCACCCTGTTGAAATTCTGCAGCAGGACTTTGAGAAGAACTACAACATGTACATCTATCCAGTGCACTGGCAGTTTGCACAGATGGACCAGCATCCTTCAGACAGGTTTTTGACTCACTCTGAGCTGGCTCCGCTGCGCGTTCCTCTAGTTCCCATGGAGCATTGCACCTCAGTCTTCTTTCAAATGTGTGATGCCGACAAGGACAAACTGGTCTCCTTCAAAGAGTGGTGCAGCTGCTTTGGCATTA

Function

symbol description
sparcl1 Predicted to enable calcium ion binding activity; collagen binding activity; and extracellular matrix binding activity. Predicted to be involved in anatomical structure development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in lens. Orthologous to human SPARCL1 (SPARC like 1).

GO:

id name namespace
GO:0048856 anatomical structure development biological_process
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005518 collagen binding molecular_function
GO:0050840 extracellular matrix binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060130-6 Predicted to enable calcium ion binding activity; collagen binding activity; and extracellular matrix binding activity. Predicted to be involved in anatomical structure development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in lens. Orthologous to human SPARCL1 (SPARC like 1).

Ensembl:

ensembl_id ENSDARG00000074989

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000761 False 2310 mRNA 0.44 11 37391141 37418194
TCONS_00000762 False 801 mRNA 0.47 3 37391195 37400053
TCONS_00000763 False 4166 mRNA 0.37 10 37391716 37419873
TCONS_00000764 True 752 lncRNA 0.46 5 37404990 37417631

Neighbor

gene id symbol gene type direction distance location
XLOC_000434 fam193a coding upstream 28895 37312580 ~ 37362246 (+)
XLOC_000433 dclk2a coding upstream 80651 37195465 ~ 37310490 (+)
XLOC_000432 FO704615.1 coding upstream 267369 37123642 ~ 37123772 (+)
XLOC_000431 NA coding upstream 424859 36966000 ~ 36966282 (+)
XLOC_000430 arhgap10 coding upstream 478050 36771954 ~ 36913091 (+)
XLOC_000436 NA coding downstream 171385 37591258 ~ 37638367 (+)
XLOC_000437 si:dkey-6f10.4 coding downstream 281388 37701261 ~ 37704183 (+)
XLOC_000438 GALNTL6 coding downstream 332298 37752171 ~ 38132612 (+)
XLOC_000439 NA coding downstream 413474 37833347 ~ 37834392 (+)
XLOC_000440 CT583668.1 coding downstream 576586 37996459 ~ 37996577 (+)
XLOC_000425 BX324156.1 non-coding upstream 1236764 36154261 ~ 36154377 (+)
XLOC_000421 NA non-coding upstream 1492704 35896392 ~ 35898437 (+)
XLOC_000415 NA non-coding upstream 2297629 35034294 ~ 35093512 (+)
XLOC_000442 NA non-coding downstream 751984 38171857 ~ 38324035 (+)
XLOC_000443 NA non-coding downstream 763926 38183799 ~ 38187194 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_05089807_05098784 SPARCL1 coding CI01000049 null 5089807 ~ 5098983 (+)