XLOC_000439


Basic Information

Item Value
gene id XLOC_000439
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 37833347 ~ 37834392 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003090
ttaaaaattgctgttaatttacggcaaaattttaacagtataatcCTGTTATTGTCAAAAGCAgtatgttgctgtttttttacgGTTTTTGAAATGACGTAGAcgaaatttaacattattttactgtttttatcacACCAATGTAAAAAAACAGCAATCAACAGTATTTTTTGAACAGAAGACGTCAGCCATTACATGTGGATTTTCATGCTTCTTTTAACTTTGACTTACTCGGTGAGTGCACctttatttagctaattttacACAAAATACACATTTGTGATTGCACATAGGCTAACTGGATGCTGATATTGTAACTTTTTTACATCTATTTTAGTTCTAAATCAGTGTCAATGTGCAAACTGCATCTGCATTGAGTGGAACTGGATTTCTGACACAGATATTTCCTGATTACATGGTAAGTCAGACTATGATAATTAAAAATGATATAGGCTATAAGCGTATCTACAAAGTCAGTATTTAAACATATGTAGCAACAAAGTAGTATTGATTTAGGTAGCATGATGAAAAGATTGTCATCTTATAGTTAATTTTAGCTTTAGCTTTTAAGAGCTACCTAATATGGTTTCAATGTAGGCTTTGATAAAACATTTTTCCCCTAATgctgtgtttaaaaatgttactGTTGTTGGTTTGTATTGTAATGCTACTTTGTCGAGTACAATTGGCTAATCACCACGATAAactgttttatacagtatgtccTTTTCAGCGCTGAACCTGTGAACATGTGAACATGCTAACTGCATCATAGAGTGGAGCTGGATTTCTGATACAGATATTGATTTCTGATTACAAGGTGAGTTTAATGAAACATGATAACAtggtaaagttattattattgtctatatGGTATTATTGTCCTAATaactgaaaatacaattaaaaaatgctaTGCATACATTATGGTTGTTAATTTTGTCTCTTTCCTCATCATTGTAATTCTTGTCTTAGGCATCTTCTACTGTACCTGATGTAGAAAAGACCCTTGAACTACCTGCAATTCCTTGACTGATACTTTTTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003090 True 1046 lncRNA 0.32 1 37833347 37834392

Neighbor

gene id symbol gene type direction distance location
XLOC_000437 si:dkey-6f10.4 coding upstream 129164 37701261 ~ 37704183 (+)
XLOC_000436 NA coding upstream 194980 37591258 ~ 37638367 (+)
XLOC_000435 sparcl1 coding upstream 413474 37391141 ~ 37419873 (+)
XLOC_000434 fam193a coding upstream 471101 37312580 ~ 37362246 (+)
XLOC_000433 dclk2a coding upstream 522857 37195465 ~ 37310490 (+)
XLOC_000440 CT583668.1 coding downstream 162067 37996459 ~ 37996577 (+)
XLOC_000441 galnt7 coding downstream 307962 38142354 ~ 38170906 (+)
XLOC_000442 NA coding downstream 337465 38171857 ~ 38324035 (+)
XLOC_000443 NA coding downstream 349407 38183799 ~ 38187194 (+)
XLOC_000444 NA coding downstream 508928 38343320 ~ 38346108 (+)
XLOC_000432 FO704615.1 non-coding upstream 709575 37123642 ~ 37123772 (+)
XLOC_000431 NA non-coding upstream 867065 36966000 ~ 36966282 (+)
XLOC_000425 BX324156.1 non-coding upstream 1678970 36154261 ~ 36154377 (+)
XLOC_000421 NA non-coding upstream 1934910 35896392 ~ 35898437 (+)
XLOC_000446 BX649481.1 non-coding downstream 831362 38665754 ~ 38753029 (+)

Expression


Co-expression Network