G2248


Basic Information

Item Value
gene id G2248
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6631345 ~ 6632025 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU3155
ggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttgaGGTGCATTCGGggggtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcatattgctatcttgaggcagcgggaagtgatcgcgccattgaccaacaaaaacctggtctaaagtcaataacgcagcatttcattgttattttaacaaagcattagtaaaatgctcctaggctcgtgcacac
>TU3157
ggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcatattgctatcttgaggcagcgggaagtgatcgcgccattgaccaacaaaaacctggtctaaagtcaataacgcagcatttcattgttattttaacaaagcattagtaaaatgctcctaggctcgtgcacac
>TU3160
ggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcgtgttggtcttacagggaggtgtgttcaggtgcattctgggcatattgctatcttgaggcagcgggaagtgatcgcgccattgaccaacaaaaacctggtctaaagtcaataacgcagcatttcattgttattttaacaaagcattagtaaaatgctcctaggctcgtgcacac

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU3155 True 597 lncRNA 0.26 2 6631345 6632025
TU3157 False 471 lncRNA 0.41 2 6631345 6632025
TU3160 False 345 lncRNA 0.47 2 6631345 6632025

Neighbor

gene id symbol gene type direction distance location
LOC120574032 NA coding downstream 123901 6494570 ~ 6507444 (-)
LOC120574175 NA coding downstream 139546 6488020 ~ 6491799 (-)
LOC120574130 NA coding downstream 148975 6476965 ~ 6482370 (-)
LOC120573968 LOC103383287,LOC103375385,LOC108228344,LOC101483597,LOC101070538,LOC106535156,LOC105919311 coding downstream 155452 6467139 ~ 6475893 (-)
LOC120568678 NA coding downstream 344921 6269260 ~ 6286424 (-)
LOC120569774 NA coding upstream 132515 6764540 ~ 6764654 (-)
LOC120569514 NA coding upstream 133821 6765846 ~ 6765960 (-)
LOC120569560 NA coding upstream 135201 6767226 ~ 6767341 (-)
LOC120569553 NA coding upstream 136158 6768183 ~ 6768294 (-)
LOC120569564 NA coding upstream 137146 6769171 ~ 6769280 (-)
G2234 NA non-coding downstream 42266 6588824 ~ 6589079 (-)
G2228 NA non-coding downstream 67792 6563116 ~ 6563553 (-)
G2226 NA non-coding downstream 77423 6553567 ~ 6553922 (-)
G2222 NA non-coding downstream 82536 6528666 ~ 6548809 (-)
G2185 NA non-coding downstream 237714 6393053 ~ 6393631 (-)
G2250 NA non-coding upstream 12858 6644883 ~ 6652778 (-)
G2256 NA non-coding upstream 56664 6688689 ~ 6689156 (-)
G2294 NA non-coding upstream 59895 6691920 ~ 6692196 (-)
G2293 mdh1 non-coding upstream 63400 6695425 ~ 6722877 (-)
G2295 NA non-coding upstream 65266 6697291 ~ 6697726 (-)
spred2a spred2 other downstream 49747 6540642 ~ 6581598 (-)
G2219 NA other downstream 96902 6521506 ~ 6534443 (-)
G2177 NA other downstream 364107 6266606 ~ 6267238 (-)
LOC120563747 LOC104946033 other downstream 424455 6200947 ~ 6206890 (-)
G2146 NA other downstream 519753 6111139 ~ 6111592 (-)
vps54 vps54 other upstream 176727 6808752 ~ 6876237 (-)
LOC120565104 peli1,LOC103372217,LOC100709940,LOC102294912,LOC101486541,LOC108247092,LOC107382286 other upstream 257263 6889288 ~ 6938987 (-)
LOC120571633 otx1,LOC102233826 other upstream 367146 6999171 ~ 7017659 (-)
trnae-uuc NA other upstream 389549 7021574 ~ 7021645 (-)
trnae-uuc_1 NA other upstream 391092 7023117 ~ 7023188 (-)

Expression


Co-expression Network