G5980


Basic Information

Item Value
gene id G5980
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19011194 ~ 19011517 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU8143
tgaacttgtgtgtgttgtagcagtgctttgctattgagaacgacgtagcatgctagcgttagcattagcgttagcatgctaatgctaactgttagcatgctaacgagctaacggttgtggttagccagctcatttcggactgtgacgtcacagtccgagacgattttgaacagctcaccaggagactgaaggcaggacacattcagaaactgtatctcactcaaaacagcatggatggatttttttcaaagtttgtatgtgtgtggaagcaccagagacacaaaagaacaccccaaatcccagaaaaagtgattttttcataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU8143 True 324 lncRNA 0.51 1 19011194 19011517

Neighbor

gene id symbol gene type direction distance location
gde1 gde1,LOC100700294,LOC102797450 coding downstream 20708 18985103 ~ 18990486 (-)
LOC120560204 pbx4,LOC104952752,LOC103392870,LOC102788435 coding downstream 206560 18790616 ~ 18804634 (-)
LOC120562921 LOC104952754,LOC103372004 coding downstream 223336 18783925 ~ 18787858 (-)
LOC120559658 LOC104952753 coding downstream 244310 18752659 ~ 18766884 (-)
LOC120559642 slc27a1,LOC103362239 coding downstream 259203 18743569 ~ 18751991 (-)
xpnpep1 xpnpep1 coding upstream 93730 19105247 ~ 19120656 (-)
cusr NA coding upstream 109516 19121033 ~ 19142663 (-)
pnpla6 pnpla6,LOC107083430 coding upstream 592912 19604429 ~ 19639873 (-)
LOC120568545 atp5h,LOC101475776,LOC102207628,LOC102296504,LOC100697434 coding upstream 629014 19640531 ~ 19644093 (-)
LOC120574931 LOC103369153,LOC102777830,LOC104922226,LOC101476272 coding upstream 633984 19645501 ~ 19647903 (-)
G5970 NA non-coding downstream 49197 18961212 ~ 18961997 (-)
G5954 NA non-coding downstream 54563 18956407 ~ 18956631 (-)
G5935 NA non-coding downstream 80694 18930256 ~ 18930500 (-)
G5926 LOC103372008 non-coding downstream 135456 18874875 ~ 18875738 (-)
G5921 LOC103372008 non-coding downstream 153655 18836277 ~ 18857539 (-)
G5984 NA non-coding upstream 39045 19050562 ~ 19050835 (-)
G6020 NA non-coding upstream 224676 19236193 ~ 19242318 (-)
G6025 NA non-coding upstream 249718 19261235 ~ 19263727 (-)
G6052 smc3 non-coding upstream 375810 19387327 ~ 19394267 (-)
G6081 pdcd4,LOC104958203 non-coding upstream 469618 19481135 ~ 19488019 (-)
mcrip2 mcrip2,LOC104963804 other downstream 28876 18971970 ~ 18982318 (-)
G5930 LOC102307335,LOC101466373 other downstream 120974 18884968 ~ 18890220 (-)
LOC120556582 NA other downstream 1129435 17879868 ~ 17881759 (-)
LOC120556682 NA other downstream 1163157 17835904 ~ 17848037 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other downstream 1175433 17817507 ~ 17835761 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other upstream 11699 19023216 ~ 19037081 (-)
G6084 NA other upstream 478071 19489588 ~ 19545927 (-)
LOC120569510 NA other upstream 753376 19764893 ~ 19765387 (-)
micu3a micu3,LOC100706756,LOC102779354,LOC101479276 other upstream 754980 19766497 ~ 19796522 (-)
spink4 NA other upstream 1031246 20042763 ~ 20044726 (-)

Expression


Co-expression Network