LOC120560204 (pbx4,LOC104952752,LOC103392870,LOC102788435)


Basic Information

Item Value
gene id LOC120560204
gene name pbx4,LOC104952752,LOC103392870,LOC102788435
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 18790616 ~ 18804634 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802476.1
TTTTGAGCCCTGTATGTTTTTTATGGGAAACTTTTCAACCTCTCGTTTTTCAAAGTGCTGAAAGTTGGAGAAGGAAACCCCTTTTGTAGtgatcctcctcctcccatctctcCCTCCACAATAAGAGCCACATTGTAGAGATGGAGGACCAGGCCCGCATGATGTTGGGTCATATTGGACTAACTGGACTGTCTCATGAGGATGTGGGTGATCCTGACAACATAAGGAAACATCACAACCTCGGTCAGCCGCAGCAGCAGGACATTGGTGACATCCTCCAGCAGATCATGGTCATCACAGATGAGAGTCTGGATGAGGCCCAGGCCAGGAAGCACGCTTTGAACTGCCACAGAATGAAGCCCGCCCTCTTCAGTGTCCTGTGTGAGATCAAAGAAAGGACAGCCCTGAGCATCCGAGGCGTCCAAGAAGAAGACAGCCCGGACCCTCAATTCCTGCGACTGGACAACATGCTGTTAGCGGAGGGGGTTGCGGGTCCAGAGAGGAGCGGGGCCTCTGCAGCGGCGGCAGTGGTTGCCGCGGCTGCCGGAGGGTCACCTAGTGAGGGGAATGTGGAACACAGCGAGTACAAAGAGAAGCTCGCTCAGATACGACGGATGTACCACGCTGAGCTGGAGAAATACCAACAGGCATGCAATGAATTCACCGACCACGTGATGAACCTGCTGAGGGAACAGTCCCGTACACGGCCCATCTCGCCCAAAGAGATTGAGCGAATGGTGGGAATCATCCACCGCAAGTTCAGCACTATCCAGATGCAACTAAAGCAGAGCACATGTGAAGCTGTCATGATCCTACGCTCCAGGTTCCTGGATGCCAGGCGGAAACGAAGAAACTTCAGCAAGCAGGCGGCCGAAATTTTGAATACATATTTTTACTCCCATCTGGCAAACCCATACCCCAGTGAGGAGGCCAAGGAGGACCTGGCCAGGAAGTGTTCTATCACCGTTTCTCAGGTGGCCAACTGGTTTGGAAACAAGAGGATTCGGTATAAGAGGAACGTTGCAAAGTTGCAGGAAGAAGCTAACCGGTACGCTGTGAAGACAGCTGTGGACGCTGCCAGTGTATCTTCACAGGCAAGCCAAGCCAACTCCCCAGCCACACCAAACTcagGAGGATACCCAGCTCCGTGTTACACTCCTGATGGGAGGTTATGAGGACCTGCCTGCAGGAACTGCCTTCCCTCCTCTCTGTGTCCATGGTGATGACGGCTGGCAGGACAGCAGCGATTCCTCGTCccatctctcccccccccccacccagagcaacaggaagcaAGCACTACATAACCTCCATGATGATGCTCCACCTTCCAATCCTGCTCCTCCGACTAATACAACCCAGACTGTAGACCTCCAGCCAAACAGAGCATTACCAAAACTCTGcaactttcttttgttttgctttgtgatGCTGATCCTTTCTAACATCTCTCCCACACGTTCTTTTTAACCCCTTCATTTTACGAATGTGTTGAcaactctttctttctttttttttctttttactattACTCACaccatttttctttatttttgttttttaaaagataaataaatgacaGAAAGAACCTTTTTTTAATGTACTGCTTCACCTACAGTGAATCATGTATCACTGTATAAAGGTTTAGGGCCTGTATGTGGCCTTGAATCtgattcatcattttatttcaaagaattaaaaaaagaagaaaaaaaaatgacaaaaataaagcATGTAGTCATTTTTAGATGTTAAACTAcaattttattatgtattttttcttttaactttaaataatgaccaaaaatgaataaaaaaacattgtcacTTATTAAATTTTTCTTTGCTTCAGACAA

Function

symbol description
pbx4 Enables DNA binding activity and DNA-binding transcription factor activity. Involved in nervous system development and positive regulation of transcription by RNA polymerase II. Acts upstream of or within animal organ development; neuron development; and regulation of histone modification. Located in nucleus. Orthologous to human PBX4 (PBX homeobox 4).

NR:

description
PREDICTED: pre-B-cell leukemia transcription factor 1-like isoform X1

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0001764 neuron migration biological_process
GO:0031016 pancreas development biological_process
GO:0007411 axon guidance biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0030901 midbrain development biological_process
GO:0030902 hindbrain development biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802476.1 True 1856 mRNA 0.47 8 18790616 18804634

Neighbor

gene id symbol gene type direction distance location
LOC120562921 LOC104952754,LOC103372004 coding downstream 2758 18783925 ~ 18787858 (-)
LOC120559658 LOC104952753 coding downstream 23732 18752659 ~ 18766884 (-)
LOC120559642 slc27a1,LOC103362239 coding downstream 38625 18743569 ~ 18751991 (-)
LOC120563090 NA coding downstream 54095 18727400 ~ 18736521 (-)
LOC120563085 colgalt1,LOC102311502,LOC100712117,LOC103362237 coding downstream 63866 18712936 ~ 18726750 (-)
gde1 gde1,LOC100700294,LOC102797450 coding upstream 180469 18985103 ~ 18990486 (-)
xpnpep1 xpnpep1 coding upstream 300613 19105247 ~ 19120656 (-)
cusr NA coding upstream 316399 19121033 ~ 19142663 (-)
pnpla6 pnpla6,LOC107083430 coding upstream 799795 19604429 ~ 19639873 (-)
LOC120568545 atp5h,LOC101475776,LOC102207628,LOC102296504,LOC100697434 coding upstream 835897 19640531 ~ 19644093 (-)
G5894 NA non-coding downstream 101571 18630276 ~ 18689045 (-)
LOC120545674 NA non-coding downstream 126109 18663944 ~ 18664507 (-)
G5809 NA non-coding downstream 203080 18584673 ~ 18587536 (-)
G5801 NA non-coding downstream 215285 18575017 ~ 18575331 (-)
G5800 NA non-coding downstream 216362 18574050 ~ 18574254 (-)
G5921 LOC103372008 non-coding upstream 31643 18836277 ~ 18857539 (-)
G5926 LOC103372008 non-coding upstream 70241 18874875 ~ 18875738 (-)
G5935 NA non-coding upstream 125622 18930256 ~ 18930500 (-)
G5954 NA non-coding upstream 151773 18956407 ~ 18956631 (-)
G5970 NA non-coding upstream 156578 18961212 ~ 18961997 (-)
LOC120556582 NA other downstream 908857 17879868 ~ 17881759 (-)
LOC120556682 NA other downstream 942579 17835904 ~ 17848037 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other downstream 954855 17817507 ~ 17835761 (-)
LOC120560175 NA other downstream 1076718 17710639 ~ 17713898 (-)
LOC120569099 NA other downstream 1369518 17412053 ~ 17421098 (-)
G5930 LOC102307335,LOC101466373 other upstream 80334 18884968 ~ 18890220 (-)
mcrip2 mcrip2,LOC104963804 other upstream 167336 18971970 ~ 18982318 (-)
cxcl12b cxcl12,LOC108241502,LOC100709445,LOC104922054,LOC102798533 other upstream 218582 19023216 ~ 19037081 (-)
G6084 NA other upstream 684954 19489588 ~ 19545927 (-)
LOC120569510 NA other upstream 960259 19764893 ~ 19765387 (-)

Expression


Co-expression Network