XLOC_004605 (muc13b)


Basic Information

Item Value
gene id XLOC_004605
gene name muc13b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16106459 ~ 16122514 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009140
ACTGAACAGACGGCAGTGCCAAACGTCCAGCAACCAGACGAGCTGATTTTTTTATACTTCCTTATATTACTGCACTCCTGCTCggagtaaaatctgaaaatgaaaaaagCGCTAAAGACCTTTCTGATCTTCTGCTTAGTGGCTGCAACGACTGCACAAGGTTCAAGCACAACCACAGGTCCTGCCACCACCACTGATGCAGCTCCTACAACTCAAGGCCCAATAAGCTCGACGACTCCTTCCCCCCTTGTCACTGAAACCACTACAACACAAGGCACAAGCACAGGTCCTGTCACCACCACTAATGCAGCTCCTACAACACAAGgCCCAATAAGCTCGACGACTCCTTCCCCCATTGTCACGGAAGCCCCTACAACACAAGGCCCAATAAGCTCGACGACTCCTTCCCCCATTGTCACTGAATCCACTACAACACAAGcaGGCTCATCAAGCACGGCTTCTGCCAACACCACCTCTGCAGCTGCAGGCACAACAGACACAGGCTCTACGACACAAGATGGCACAACAAGCACAGCTCCTCCCACCACCACGACCACTCCAGCCACTACGACACAAGgtCCATGTGCATCTAGTCCTTGTATTGGAGGCAGTACCTGTGAAAATCGCTTTGAAGGATCGTTTGCTTGCATCTGTCGGCCTGGGCTATTTTATGATGAAAATGACGGCTGTATTCGAAGAAAGGTCTTCCCTGGTAATTTCAAATTAAACGaggattttaaaaaagaaatggctgACACAACATCTAAAGAGTTTAAAGACAAAGCTCAGGAAATTGAAGATGATctcaGGGAGTCTTTGAAGGAAGTAGATGGTTATATTAGGTCCATTGTTTTAAAACTGAGTAATGGCAGTATAGTTGCAGAAGTACAGAACATCTTTGAGCCATCATCCACCGCCACATCAGAAAAAATTGAAGAAAGCATTGAAGTTTCATTTCCTGACAGTTTTGAAAGCGTCACTTTGTGTGGTGCTGGTGCTTGTGACAGTAGAACCACAAAGTGTAATGAGCAGCCAGGGGGTGGTGCTGTAACATGCACTTGCCTAGATGGCTACATAAAGTCTGATTTCTCAACAGATTCCTGCATTGCTTGCCCAAGTGGGGAGAAAGCAGTGGATGGCAAATGTGAAAAatgtCCGTTTGGCTTTGCTGGATTTAACTGCGATGATTCAAATCTTTTGATTGTGGTCGTGGTATCTGCTGTGTTGGGTTCATTGCTGATCATCTTCATGGTGTCCCTGATAGTTGTAAGCTGCAGGAATCAAAAGGGAAGTTCCTCACCAGAGGTAGACTTTAGCTTAAGTTATGGCAATAAGGATTTGCATAAACCTACAGGAGTTCCCAGGATCCCTCGGGCTAACCCTGAGTCCAACTGGAAGTCTAACAATCTGGAGATGACCAATAGTGACAGTAATCAGAGCCTGGTGACCAGAGATCGCCCAGAAAGCAAAGGGCGCTACCATGAATATGAAGAGGCACCGAGTTACAGGACTCAAGTTCCCCCAGCGTATTCGGGTTACTCTGCTGCAAGAGGAATGGATAATGGCGGTGTCCAAAACCCATACTTCCGGCAAGATGATGACAGAATGCacagatattaataatattggaCCATGAGAACAATTAGATGAGTTGTCTTCATCTTCATGTACTGAatgacattatttaatttaaaaaataatacattttaaaagtttgtaATGACATTGCAATCTTAAATACAACTTTTTTTCCTGCTAATGAATCAGCTTATGGGCTTCACTCTTGATACAAGTGTTTGCTTTGAAGTATTTGGAGGAAATGTCTCATTAACTGTTGAATGGAAGCTCTTTACCAACTTACAAacataaaatcagttttatttatccTAAAACACACCCATGTGTTAAATTAAATGGTAAAATGAGAGGCTaagtttgatatgtgaatatttgtatttatgtCATTTTTTTGGGCTTGTGTTTAGTGTTGCTATAATGCTTGTGCTGGAACTCAGGTGTACATAAAAGAATCTTAAATCATTTGAGATATTCAAGCTGTAATATGATTATTGCATTTTCAAACTGTAACCATTTGAAGTATTATATGATGTTTTGACAATTCAGTTgaagtattttattataaattaaagaaatataataaaacaatatgattTTTTCAAATAACAAAGTTATAACGTTTTTAATAAATTTCCAAATGTA

Function

symbol description
muc13b Predicted to be involved in cell-cell junction assembly. Predicted to act upstream of or within heart development. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MUC13 (mucin 13, cell surface associated).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-61 Predicted to be involved in cell-cell junction assembly. Predicted to act upstream of or within heart development. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MUC13 (mucin 13, cell surface associated).

Ensembl:

ensembl_id ENSDARG00000079647

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009140 True 2220 mRNA 0.41 19 16106459 16122514

Neighbor

gene id symbol gene type direction distance location
XLOC_004604 znf281b coding upstream 4037 16087077 ~ 16102422 (+)
XLOC_004603 NA coding upstream 157908 15948036 ~ 15948551 (+)
XLOC_004602 NA coding upstream 180662 15904124 ~ 15925797 (+)
XLOC_004601 svild coding upstream 282927 15690363 ~ 15823532 (+)
XLOC_004600 nmt1b coding upstream 430174 15666949 ~ 15676285 (+)
XLOC_004606 lrp2b coding downstream 10098 16132612 ~ 16229550 (+)
XLOC_004607 mpp3b coding downstream 110563 16233077 ~ 16276276 (+)
XLOC_004608 ppp1r3cb coding downstream 158798 16281312 ~ 16288285 (+)
XLOC_004609 ankrd1b coding downstream 318194 16440708 ~ 16446373 (+)
XLOC_004610 kif20bb coding downstream 330061 16452575 ~ 16479291 (+)
XLOC_004597 CR749751.1 non-coding upstream 724645 15381694 ~ 15381814 (+)
XLOC_004593 NA non-coding upstream 991028 15111405 ~ 15115431 (+)
XLOC_004590 NA non-coding upstream 1290514 14815600 ~ 14815945 (+)
XLOC_004611 NA non-coding downstream 364451 16486965 ~ 16487567 (+)
XLOC_004612 NA non-coding downstream 367684 16490198 ~ 16491806 (+)
XLOC_004613 NA non-coding downstream 445340 16567854 ~ 16570044 (+)
XLOC_004614 NA non-coding downstream 460859 16583373 ~ 16585054 (+)
XLOC_004615 NA non-coding downstream 619881 16742395 ~ 16874703 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G262749 NA non-coding CI01000063 null 469103 ~ 477154 (-)