Fish Transcriptome and Expression Database

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model fish

XLOC_004590

Basic Information

Item	Value
gene id	XLOC_004590
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007123.7
NCBI id	CM002896.2
chromosome length	49182954
location	14815600 ~ 14815945 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010727
ACTTTGTGTATATGTGATTCACAGGCCCTAAAAAGCCCTTACAAGTCAAAGAAGATGAGAAGGCAGCATCAAAGTGTCTCAGTAATGCCAAGGATGGGAGGAAACGAGGGCATGTAGTGGAGAGCAAGAGATGGagATGAAATAGAATAtagaaaaatgcttttaaaagccAAATAACTATAAAAGCAGCATCAAAGTGACTCTGGTGCCAGGGACAAGAGAGGTA

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00010727	True	226	lncRNA	0.41	2	14815600	14815945

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_004589	NA	coding	upstream	70898	14741152 ~ 14744702 (+)
XLOC_004588	becn1	coding	upstream	112171	14556092 ~ 14703429 (+)
XLOC_004587	mto1	coding	upstream	505638	14214755 ~ 14309962 (+)
XLOC_004586	kbtbd2	coding	upstream	652819	14149686 ~ 14162781 (+)
XLOC_004585	GPT	coding	upstream	684884	14079097 ~ 14130716 (+)
XLOC_004591	mylpfb	coding	downstream	186812	15002757 ~ 15010996 (+)
XLOC_004592	CR456635.1	coding	downstream	262179	15078124 ~ 15082367 (+)
XLOC_004593	NA	coding	downstream	295460	15111405 ~ 15115431 (+)
XLOC_004594	adprh	coding	downstream	332673	15148618 ~ 15196223 (+)
XLOC_004595	med1	coding	downstream	457359	15273304 ~ 15311999 (+)
XLOC_004582	BX640453.1	non-coding	upstream	1072924	13740216 ~ 13742676 (+)
XLOC_004581	CR354395.1	non-coding	upstream	1157456	13658022 ~ 13658144 (+)
XLOC_004579	BX649204.1	non-coding	upstream	1358244	13457237 ~ 13457356 (+)
XLOC_004569	BX548041.1	non-coding	upstream	2202149	12613335 ~ 12613451 (+)
XLOC_004597	CR749751.1	non-coding	downstream	565749	15381694 ~ 15381814 (+)
XLOC_004602	NA	non-coding	downstream	1088179	15904124 ~ 15925797 (+)
XLOC_004603	NA	non-coding	downstream	1132091	15948036 ~ 15948551 (+)
XLOC_004611	NA	non-coding	downstream	1671020	16486965 ~ 16487567 (+)

Expression

Co-expression Network